TCONS_00052039 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052039
Unique NameTCONS_00052039
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length558

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052039 ID=TCONS_00052039|Name=TCONS_00052039|organism=Clytia hemisphaerica|type=transcript|length=558bp
TTGAGGAAGTCATAAATGATCTAATTGATCATAAATATCAGAATCAATAA
TCCAGGATATTGATGCAAAATCAATTGTTATTGATGAGGTATCAATTACT
ATCGACTACCTTTCGGAATCGGTTCTGACGATTAACAATCGATCATTATC
AAACTTCCAGTGTATCGATGGTAATTGATTTTTCATTAATTGTTATCGAT
TTGTCATCAATCATCCATTGATtattgattttggttttcaatgtCACATA
CTGTGACACCAGCACCATGGCAACACAATCccaatttgataaaaatctgA
TCAGATGTTACCAAAGATTACTTGTTAATTCCCAGAAAATACAGTTTGTC
ATCAAGAAAAGTTTCTTGATTGACAAACACAATAATGAACTCTTAATATA
CGACACATACGTACAGCTACTTAGCTGTGAAACTcacacaaaaatattaa
aataaagtCTTCAAAGTCCAAAAGGTTGAttaaaatttttacattgaaCT
TTTACTAAtccaaaaaaagtgtaataataccataatatttaaaaatgttt
taatcatT
Run BLAST on NCBI

transcript from alignment at scaffold_208:506856..507413

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052039 ID=TCONS_00052039|Name=TCONS_00052039|organism=Clytia hemisphaerica|type=transcript|length=558bp|location=Sequence derived from alignment at scaffold_208:506856..507413 (Clytia hemisphaerica)
Aatgattaaaacatttttaaatattatggtattattacactttttttgga
TTAGTAAAAGttcaatgtaaaaattttaaTCAACCTTTTGGACTTTGAAG
actttattttaatatttttgtgtgAGTTTCACAGCTAAGTAGCTGTACGT
ATGTGTCGTATATTAAGAGTTCATTATTGTGTTTGTCAATCAAGAAACTT
TTCTTGATGACAAACTGTATTTTCTGGGAATTAACAAGTAATCTTTGGTA
ACATCTGATcagatttttatcaaattggGATTGTGTTGCCATGGTGCTGG
TGTCACAGTATGTGacattgaaaaccaaaatcaataATCAATGGATGATT
GATGACAAATCGATAACAATTAATGAAAAATCAATTACCATCGATACACT
GGAAGTTTGATAATGATCGATTGTTAATCGTCAGAACCGATTCCGAAAGG
TAGTCGATAGTAATTGATACCTCATCAATAACAATTGATTTTGCATCAAT
ATCCTGGATTATTGATTCTGATATTTATGATCAATTAGATCATTTATGAC
TTCCTCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032955XLOC_032955Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052039-exon-scaffold_208-1491911889:506856..507413TCONS_00052039-exon-scaffold_208-1491911889:506856..507413Clytia hemisphaericaexon
TCONS_00052039-exon-scaffold_208-1510915933:506856..507413TCONS_00052039-exon-scaffold_208-1510915933:506856..507413Clytia hemisphaericaexon
TCONS_00052039-exon-scaffold_208-1575043694:506856..507413TCONS_00052039-exon-scaffold_208-1575043694:506856..507413Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_208supercontigscaffold_208:506856..507413 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.52483	1.54848	1.49629	1.88425	1.37088	0.974959	1.43764	1.64271	1.37061	1.16718	0.617943	0.541616	0.917917	0.631903	1.36847	0.867243	0.763123	1.01683	1.08062	0.678474	4.52117	4.6224	1.79679	2.06772	0	0.584445	0.764398	0.892563	1.34714	1.34797
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052039 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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