TCONS_00052041 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052041
Unique NameTCONS_00052041
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length660

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052041 ID=TCONS_00052041|Name=TCONS_00052041|organism=Clytia hemisphaerica|type=transcript|length=660bp
AAAAGAACACGAGAGTTCGTCGTTGTCGAAGCTCAAGCATATCCTTTAAC
AGGAAGATCCATATACGATTCGCCGTgtactaaaattaaaaaaatggatT
GTCTCTAAGAAATCTGAAGAAATCAAAACTGAGAGATGTATTCCGTTGTG
TGACACATGATTACGATAAAACACGAaggaaaattgttcaaaataatATC
ATCTGTACCTCTGTACATCCATGAGTGTTCTTCAAAGNGTTCAAAATAAT
ATCATCTGTACCTCTGTACATCCATGAGTGTTCTTCAAAGCGATTTTAGG
CGTTGAGAAAACATCACCAGTGAAACCAGAGCAATGACTTGGAAAATGTA
CCATCTTTTTGCATCTACGAGAAGAATTTATAAACTAAAAGTAGTTATTT
ACATTCGctttttttatttggaaattttgcttttgcttttgcttgaaaac
aaatGGAATTCAACTTTGAGactcattttttggaaaatttttaatgaagc
tttggaaaatattttatacCATAAAATTCGGAGGTCTTTCTGAggaccaa
aataaagatatatacgttttttttttaagaaacacacttttaagaaacat
gatgctcagaaaaactaaaaaacatctaagaaacatgctgggactgagaa
tgagaaaata
Run BLAST on NCBI

transcript from alignment at scaffold_208:583913..584572

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052041 ID=TCONS_00052041|Name=TCONS_00052041|organism=Clytia hemisphaerica|type=transcript|length=660bp|location=Sequence derived from alignment at scaffold_208:583913..584572 (Clytia hemisphaerica)
tattttctcattctcagtcccagcatgtttcttagatgttttttagtttt
tctgagcatcatgtttcttaaaagtgtgtttcttaaaaaaaaaacgtata
tatctttattttggtccTCAGAAAGACCTCCGAATTTTATGgtataaaat
attttccaaagcttcattaaaaattttccaaaaaatgagtCTCAAAGTTG
AATTCCatttgttttcaagcaaaagcaaaagcaaaatttccaaataaaaa
aagCGAATGTAAATAACTACTTTTAGTTTATAAATTCTTCTCGTAGATGC
AAAAAGATGGTACATTTTCCAAGTCATTGCTCTGGTTTCACTGGTGATGT
TTTCTCAACGCCTAAAATCGCTTTGAAGAACACTCATGGATGTACAGAGG
TACAGATGATATTATTTTGAACNCTTTGAAGAACACTCATGGATGTACAG
AGGTACAGATGATattattttgaacaattttcctTCGTGTTTTATCGTAA
TCATGTGTCACACAACGGAATACATCTCTCAGTTTTGATTTCTTCAGATT
TCTTAGAGACAatccatttttttaattttagtacACGGCGAATCGTATAT
GGATCTTCCTGTTAAAGGATATGCTTGAGCTTCGACAACGACGAACTCTC
GTGTTCTTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032957XLOC_032957Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052041-exon-scaffold_208-1491911889:583913..584572TCONS_00052041-exon-scaffold_208-1491911889:583913..584572Clytia hemisphaericaexon
TCONS_00052041-exon-scaffold_208-1510915933:583913..584572TCONS_00052041-exon-scaffold_208-1510915933:583913..584572Clytia hemisphaericaexon
TCONS_00052041-exon-scaffold_208-1575043694:583913..584572TCONS_00052041-exon-scaffold_208-1575043694:583913..584572Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_208supercontigscaffold_208:583913..584572 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0874392	0	0	0	0	0	0.247531	0	0.105279	0.209854	0.0545097	1.87647	1.74356	0.76476	1.56805	1.11218	1.41889	1.69318	0.937432	0.541936	0.328002	0	0.0756544	9.43665	6.67873	44.5321	38.0288
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052041 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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