TCONS_00052105 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052105
Unique NameTCONS_00052105
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length385

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052105 ID=TCONS_00052105|Name=TCONS_00052105|organism=Clytia hemisphaerica|type=transcript|length=385bp
NNCGGATAGTCGAAGCTCTGGGTCGATCAAAATTCCCAGATATTTGTAGC
TGGTAGCGTTGTTAATGGGTGTTTCACCGTAGAGTAAATTCAGTTTGGGA
GAATCGTGCAATTTCTTAGCGGTGGAAAACAACATCCCCTCGGTCTTTCC
TTTTTTCAGGTTAACGATAAGTTCGTTCTCGGTCATGAAGTGTTGGACGT
TGTTGAGTTCGGCGTTTAGGATGTCGTTGACTTCTTTGGAGCTTTTCGCC
GCAGTGTAGATGACTGTGTCGTCTGCAAACATGATCGTTTTGCAATTCTC
AAGACAGTCAGGAAagtcattgaaaaatataagaaataaaaGTGGGCCAA
GAATGCTTCCCTGGGGGACGCCACAGGTGACCGGT
Run BLAST on NCBI

protein sequence of TCONS_00052105-protein

>TCONS_00052105-protein ID=TCONS_00052105-protein|Name=TCONS_00052105-protein|organism=Clytia hemisphaerica|type=polypeptide|length=128bp
PVTCGVPQGSILGPLLFLIFFNDFPDCLENCKTIMFADDTVIYTAAKSSK
EVNDILNAELNNVQHFMTENELIVNLKKGKTEGMLFSTAKKLHDSPKLNL
LYGETPINNATSYKYLGILIDPELRLSX
Run BLAST on NCBI

transcript from alignment at scaffold_21:138259..138643

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052105 ID=TCONS_00052105|Name=TCONS_00052105|organism=Clytia hemisphaerica|type=transcript|length=385bp|location=Sequence derived from alignment at scaffold_21:138259..138643 (Clytia hemisphaerica)
ACCGGTCACCTGTGGCGTCCCCCAGGGAAGCATTCTTGGCCCACttttat
ttcttatatttttcaatgactTTCCTGACTGTCTTGAGAATTGCAAAACG
ATCATGTTTGCAGACGACACAGTCATCTACACTGCGGCGAAAAGCTCCAA
AGAAGTCAACGACATCCTAAACGCCGAACTCAACAACGTCCAACACTTCA
TGACCGAGAACGAACTTATCGTTAACCTGAAAAAAGGAAAGACCGAGGGG
ATGTTGTTTTCCACCGCTAAGAAATTGCACGATTCTCCCAAACTGAATTT
ACTCTACGGTGAAACACCCATTAACAACGCTACCAGCTACAAATATCTGG
GAATTTTGATCGACCCAGAGCTTCGACTATCCGNN

Coding sequence (CDS) from alignment at scaffold_21:138259..138643

>TCONS_00052105 ID=TCONS_00052105|Name=TCONS_00052105|organism=Clytia hemisphaerica|type=CDS|length=384bp|location=Sequence derived from alignment at scaffold_21:138259..138643 (Clytia hemisphaerica)
CCGGTCACCTGTGGCGTCCCCCAGGGAAGCATTCTTGGCCCACttttatt
tcttatatttttcaatgactTTCCTGACTGTCTTGAGAATTGCAAAACGA
TCATGTTTGCAGACGACACAGTCATCTACACTGCGGCGAAAAGCTCCAAA
GAAGTCAACGACATCCTAAACGCCGAACTCAACAACGTCCAACACTTCAT
GACCGAGAACGAACTTATCGTTAACCTGAAAAAAGGAAAGACCGAGGGGA
TGTTGTTTTCCACCGCTAAGAAATTGCACGATTCTCCCAAACTGAATTTA
CTCTACGGTGAAACACCCATTAACAACGCTACCAGCTACAAATATCTGGG
AATTTTGATCGACCCAGAGCTTCGACTATCCGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032996XLOC_032996Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052105-exon-scaffold_21-1491911889:138259..138643TCONS_00052105-exon-scaffold_21-1491911889:138259..138643Clytia hemisphaericaexon
TCONS_00052105-exon-scaffold_21-1510915933:138259..138643TCONS_00052105-exon-scaffold_21-1510915933:138259..138643Clytia hemisphaericaexon
TCONS_00052105-exon-scaffold_21-1575043694:138259..138643TCONS_00052105-exon-scaffold_21-1575043694:138259..138643Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052105-proteinTCONS_00052105-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_21supercontigscaffold_21:138259..138643 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.604734	1.76913	3.65179	1.78635	4.34943	3.00736	4.14657	6.06557	3.22745	2.73528	2.45071	7.11524	3.21752	1.53149	6.52437	1.96538	1.21059	1.24082	4.49992	4.03615	1.16938	2.85192	0.462251	1.05063	8.87344	6.18095	1.93482	2.0649	11.4105	14.3609
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052105 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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