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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052109 ID=TCONS_00052109|Name=TCONS_00052109|organism=Clytia hemisphaerica|type=transcript|length=1684bp
TCACGATTACAGTCGAGTATCTCCCGGGAGTGCTAAATGTGATAGCAGAT
TACGAGTCGAGACATGTAAACGACTCAAGCGAGTGGATGTTTGTCCAAAC
ACATTCCTCCAGATATGTTCAGTCCTGGGGTCACCAGATATAGATCTTTT
TGCATCGAGAGTGTCACATCAACTTCCAAGATATTTTGCTTGGAAGCTGG
ATCCATACAGTGTGGGAAGAGATGCCTTCCAGACCCAATGGACGAATCTC
AAAGGGTATGCATTCCCCCTTTTTCTCTAATGGGAAGGGTTTTGAAGAAG
ATAGACATGGAGCAAGCGACAGTCTTAGTTATCGCACCGGTGTAGCAGGG
ACAACCCTGGTACCCAAAACTCCTTCAATTAGCCATAAGGAATCCTGTAA
TTCTTCCATTGAAAAGGAACTTGTTAAGGAACCCAAAAGGGGAGGTTCAT
CCCTTGTTGGCCAACAGCAATCTCAGACTGGCAGCGTGGTTGGTTTCANG
TAATACTTCCATTGAAAATGAACTTGTTAAGGAACCCAAAAGGGGAGGTT
CATCCCTTGCTGGCCAACAGCAATCTCAGACTGGCAGCGTGGTTGGTTTC
AGGGGACAAAACTCGGACATTGAACTTTCAGATGGGGCTTCCAATCTTAT
CAGGTTCTCCCGCCGAAAAGGTACACGATCTCGTTACCAGTCCTCCTGGT
CAAAGTGGGCTAGCTGGTGTTCTAAAAAACAAGTTGATCCAGTTCGATGC
TCTGTGACTCATGTTCTAAACTTCTTAGCAGAGTTGTTTCAACAAGGTCT
TCAGCACAGTACTATTGCTGGTTATAGATCTGCCATCTCTGCGCTTCATG
ATCCTGTAGATGGGGTCAAGGTGGGAAGTCACCCAAAAGTTACCAGTCTT
CTATCAGGTGTTTTTAATGAGAGGTGTCCCAAAcctagattttcttttgt
atGGGATGTTGAGACTGTAGTTAGGTACTTAAAGTCTTTAGGTAAGAATC
TTGATGACAAGATGCTCACTTTGAAGCTGACAATGCTTTTAGCATTGACG
TCAGCATCCAGGGCCCATGAGATCAAATACCTGAACAAGGATTATATGCT
CAGAATGGATGAAAAGTTTGTCTTTCGATTTGGGGACGTTACGAAAACCG
CTAAACCGGGAAAGATGAAGCCAGCAGTTGAGTTCAAAAGGTTCCCATAT
GATTCGGATCTATGTGTACATAGCTTTCTTGACTTATATTTTTCTAAGAG
GGAAAGTTGGGGCAAGGGCGATGGCCAGATGATGGTTAGTTACAAGTCTC
CTCATGATCCTGTTTCGACATCAACAATTTCCCGTTGGATAGTAGATATA
CTTAAACTGTCTGGGGTGGATGTTTCAAAGTTTAAGGGACATTCCACTAG
AGCCGCTACTACTTCTAAGGCATTAAGTTTGGGAATTTCTACCAAGGAAA
TTTTGGAACGGGGTAACTGGACCAGGGTGTCtacctttcaaaaattttat
tcgaaGCCTATTGAAGGCCGTGCTAAGGATGGATTCcaggaaaaaatttt
atttttaacatgAGAGGCTTTGAAGAGAGGATGAGTGGGTTTGAGTTATG
ACTTTTATTTCTTGCCAGTCATGGCGGATATTCCAGTATTTATCTGGCGG
AGATTTTATCGTCATAAAATTGAGGATTGTGCNN Run BLAST on NCBI protein sequence of TCONS_00052109-protein >TCONS_00052109-protein ID=TCONS_00052109-protein|Name=TCONS_00052109-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
MLTLKLTMLLALTSASRAHEIKYLNKDYMLRMDEKFVFRFGDVTKTAKPG
KMKPAVEFKRFPYDSDLCVHSFLDLYFSKRESWGKGDGQMMVSYKSPHDP
VSTSTISRWIVDILKLSGVDVSKFKGHSTRAATTSKALSLGISTKEILER
GNWTRVSTFQKFYSKPIEGRAKDGFQEKILFLT Run BLAST on NCBI transcript from alignment at scaffold_21:274372..276055 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052109 ID=TCONS_00052109|Name=TCONS_00052109|organism=Clytia hemisphaerica|type=transcript|length=1684bp|location=Sequence derived from alignment at scaffold_21:274372..276055 (Clytia hemisphaerica)
NNGCACAATCCTCAATTTTATGACGATAAAATCTCCGCCAGATAAATACT
GGAATATCCGCCATGACTGGCAAGAAATAAAAGTCATAACTCAAACCCAC
TCATCCTCTCTTCAAAGCCTCTcatgttaaaaataaaattttttcctgGA
ATCCATCCTTAGCACGGCCTTCAATAGGCttcgaataaaatttttgaaag
gtaGACACCCTGGTCCAGTTACCCCGTTCCAAAATTTCCTTGGTAGAAAT
TCCCAAACTTAATGCCTTAGAAGTAGTAGCGGCTCTAGTGGAATGTCCCT
TAAACTTTGAAACATCCACCCCAGACAGTTTAAGTATATCTACTATCCAA
CGGGAAATTGTTGATGTCGAAACAGGATCATGAGGAGACTTGTAACTAAC
CATCATCTGGCCATCGCCCTTGCCCCAACTTTCCCTCTTAGAAAAATATA
AGTCAAGAAAGCTATGTACACATAGATCCGAATCATATGGGAACCTTTTG
AACTCAACTGCTGGCTTCATCTTTCCCGGTTTAGCGGTTTTCGTAACGTC
CCCAAATCGAAAGACAAACTTTTCATCCATTCTGAGCATATAATCCTTGT
TCAGGTATTTGATCTCATGGGCCCTGGATGCTGACGTCAATGCTAAAAGC
ATTGTCAGCTTCAAAGTGAGCATCTTGTCATCAAGATTCTTACCTAAAGA
CTTTAAGTACCTAACTACAGTCTCAACATCCCatacaaaagaaaatctag
gTTTGGGACACCTCTCATTAAAAACACCTGATAGAAGACTGGTAACTTTT
GGGTGACTTCCCACCTTGACCCCATCTACAGGATCATGAAGCGCAGAGAT
GGCAGATCTATAACCAGCAATAGTACTGTGCTGAAGACCTTGTTGAAACA
ACTCTGCTAAGAAGTTTAGAACATGAGTCACAGAGCATCGAACTGGATCA
ACTTGTTTTTTAGAACACCAGCTAGCCCACTTTGACCAGGAGGACTGGTA
ACGAGATCGTGTACCTTTTCGGCGGGAGAACCTGATAAGATTGGAAGCCC
CATCTGAAAGTTCAATGTCCGAGTTTTGTCCCCTGAAACCAACCACGCTG
CCAGTCTGAGATTGCTGTTGGCCAGCAAGGGATGAACCTCCCCTTTTGGG
TTCCTTAACAAGTTCATTTTCAATGGAAGTATTACNTGAAACCAACCACG
CTGCCAGTCTGAGATTGCTGTTGGCCAACAAGGGATGAACCTCCCCTTTT
GGGTTCCTTAACAAGTTCCTTTTCAATGGAAGAATTACAGGATTCCTTAT
GGCTAATTGAAGGAGTTTTGGGTACCAGGGTTGTCCCTGCTACACCGGTG
CGATAACTAAGACTGTCGCTTGCTCCATGTCTATCTTCTTCAAAACCCTT
CCCATTAGAGAAAAAGGGGGAATGCATACCCTTTGAGATTCGTCCATTGG
GTCTGGAAGGCATCTCTTCCCACACTGTATGGATCCAGCTTCCAAGCAAA
ATATCTTGGAAGTTGATGTGACACTCTCGATGCAAAAAGATCTATATCTG
GTGACCCCAGGACTGAACATATCTGGAGGAATGTGTTTGGACAAACATCC
ACTCGCTTGAGTCGTTTACATGTCTCGACTCGTAATCTGCTATCACATTT
AGCACTCCCGGGAGATACTCGACTGTAATCGTGA Coding sequence (CDS) from alignment at scaffold_21:274372..276055 >TCONS_00052109 ID=TCONS_00052109|Name=TCONS_00052109|organism=Clytia hemisphaerica|type=CDS|length=552bp|location=Sequence derived from alignment at scaffold_21:274372..276055 (Clytia hemisphaerica)
TcatgttaaaaataaaattttttcctgGAATCCATCCTTAGCACGGCCTT
CAATAGGCttcgaataaaatttttgaaaggtaGACACCCTGGTCCAGTTA
CCCCGTTCCAAAATTTCCTTGGTAGAAATTCCCAAACTTAATGCCTTAGA
AGTAGTAGCGGCTCTAGTGGAATGTCCCTTAAACTTTGAAACATCCACCC
CAGACAGTTTAAGTATATCTACTATCCAACGGGAAATTGTTGATGTCGAA
ACAGGATCATGAGGAGACTTGTAACTAACCATCATCTGGCCATCGCCCTT
GCCCCAACTTTCCCTCTTAGAAAAATATAAGTCAAGAAAGCTATGTACAC
ATAGATCCGAATCATATGGGAACCTTTTGAACTCAACTGCTGGCTTCATC
TTTCCCGGTTTAGCGGTTTTCGTAACGTCCCCAAATCGAAAGACAAACTT
TTCATCCATTCTGAGCATATAATCCTTGTTCAGGTATTTGATCTCATGGG
CCCTGGATGCTGACGTCAATGCTAAAAGCATTGTCAGCTTCAAAGTGAGC
AT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052109-exon-scaffold_21-1491911889:274372..276055 | TCONS_00052109-exon-scaffold_21-1491911889:274372..276055 | Clytia hemisphaerica | exon |
| TCONS_00052109-exon-scaffold_21-1510915933:274372..276055 | TCONS_00052109-exon-scaffold_21-1510915933:274372..276055 | Clytia hemisphaerica | exon |
| TCONS_00052109-exon-scaffold_21-1575043694:274372..276055 | TCONS_00052109-exon-scaffold_21-1575043694:274372..276055 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_21 | supercontig | scaffold_21:274372..276055 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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