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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052110 ID=TCONS_00052110|Name=TCONS_00052110|organism=Clytia hemisphaerica|type=transcript|length=2040bp
atggaatgataagatctataaattgtaaagatgtaagattgtttcataga
ggtcaatagacctgagaaatacacttctataaataaataaataataacac
TCGATgtaggttttttttttattatgtcGAGTTCCGAAAATTacaatttt
cttgaattttaaaACCAGATAATTAAACCTTCAGGTGCTTTTTATTTGAG
AGattggtgggatagagcatattgcattgcaccaacgcgaaaaaaacttc
tcgtgtccccaagtcTTTACTTGTTCCATTTTTCGTATCAATCGATAGCC
CTTTTTAGTATTCCCTTGGTGCGCAAATGTacatctttgaaaaaaatcat
aggaTAAATAAGGACAAGTCAAAATACAGTTTCGTGAACATACagatcat
gaacatataaacaacCGGACGGCTATCTTCCATTGTGTCTTTCAGCGAGC
TTTGTTgtcgcctgtatttcaaaattggtataaaaaatccgacaatattc
cgtcacaatttcatttcttggaattacttaggtaaaaggattgataaaGC
TTGAACATTAATcgtaattcacaaaagaattattctaaattttttttata
agtttgcaatatattttatcaacatttttcaacgcAGAAATGCAggattt
caactgcgtgtatacttttgaatcacttttgtcactccaataattttttt
tatgacaagaaaaaaaaagtatgccaaagttgagagcctgtgtcataaga
ttatcataatttgaatcccatactctctaaaattattccatacttttgag
tccaaatttaaaaatattagtcGGAATTTTGACAAGATGACGATGATTTT
ACCTCcattatctttgttatgatatagataaaagAtcgatgtccagtcgt
ttatatgttcatgtacAGATTTAAAACCTTTCACTcgtagttgtgtttcg
actcgatattATTTATTACGAGACCCTGTACTTTTACACGGTGGCTTGta
cttttaccttttttatGGTTATACTGTATTGTCACTAACACagagatatc
ttatataaatctaaaaaaaattgcaagataGATTTGTTACGGTTCGGCGC
TATTCAATGCCTGAGATATTTTCTCGCCAGTCTTTTGCCGTCCCTTCTGT
GGCACTGTCATGTAGTTGTGATCCTTTATTTGGCACACGAACAGCTTCAT
CAAAGCGATGTTTTATTTTATCCATCTTAAAGCAATGGTATATATcacgt
ttttcaaaaaatctgcttTTTGATGAATTAGTACCAGAAAGTTAGTACTA
GCAAGACATAAAATCTctctaataaaaacaaaccaactGACggcatgatt
ttttttcaaaaaaaaaatcgcaTGTAAGAGTTCGGGGTACTGTAGCTATA
CGCTATTTCTTTAGGAGGGTGGTTAAGTATCTAGCATAAGTCTCTTAGTC
TGACCATATCAACACACGTCTTTACAGCTTtctcgatgacgtcattataa
CCCAAAGTAGCACAAATTTGGAGGAAATCTACCATTTTATAACCTGGTAT
GTTTGTATTGATCTTGTCAACGAGGTCAGAGGTTGGTTTAAACTCTCCTT
TGAAGGCATTTTGTATATTTGTTATTTGGAAGTCTTGGAATTTATCTTTG
AAGGTATTTGTTGCATACAGTTCCCACGCGGTTTCTGGGAGTGCTCGGGA
GACTAAATCCAAATCATCTTCACTAAATCCACCAATAGTCTCGCCTCGTG
GCTCTACGTCACTCAATTCGCTAATTTCGTGCTCTTCAATACCAATTCTT
TTGAACTCTACCCAAGTGAGAGAACCATATTTTTTCTGTAAAGCTACCAA
GAAAGCCCTGTTTTGTTTCGACAACTCGTTATTTATATCATTAAGCTCAG
GTAATCGATATTTCTCGTCTTCTCTGCCACGATAAATCTTTTCACCAACG
CGATACCATCTTTTATTATGATTCAAATCTGCACTTAGTTCGTTCCTATT
CTTCTGGTTATTGTACACGTCTTTGAATAATAAtgattct Run BLAST on NCBI transcript from alignment at scaffold_210:23519..25719+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052110 ID=TCONS_00052110|Name=TCONS_00052110|organism=Clytia hemisphaerica|type=transcript|length=2201bp|location=Sequence derived from alignment at scaffold_210:23519..25719+ (Clytia hemisphaerica)
atggaatgataagatctataaattgtaaagatgtaagattgtttcataga
ggtcaatagacctgagaaatacacttctataaataaataaataataacac
TCGATgtaggttttttttttattatgtcGAGTTCCGAAAATTacaatttt
cttgaattttaaaACCAGATAATTAAACCTTCAGGTGCTTTTTATTTGAG
AGattggtgggatagagcatattgcattgcaccaacgcgaaaaaaacttc
tcgtgtccccaagtcTTTACTTGTTCCATTTTTCGTATCAATCGATAGCC
CTTTTTAGTATTCCCTTGGTGCGCAAATGTacatctttgaaaaaaatcat
aggaTAAATAAGGACAAGTCAAAATACAGTTTCGTGAACATACagatcat
gaacatataaacaacCGGACGGCTATCTTCCATTGTGTCTTTCAGCGAGC
TTTGTTgtcgcctgtatttcaaaattggtataaaaaatccgacaatattc
cgtcacaatttcatttcttggaattacttaggtaaaaggattgataaaGC
TTGAACATTAATcgtaattcacaaaagaattattctaaattttttttata
agtttgcaatatattttatcaacatttttcaacgcAGAAATGCAggattt
caactgcgtgtatacttttgaatcacttttgtcactccaataattttttt
tatgacaagaaaaaaaaagtatgccaaagttgagagcctgtgtcataaga
ttatcataatttgaatcccatactctctaaaattattccatacttttgag
tccaaatttaaaaatattagtcGGAATTTTGACAAGATGACGATGATTTT
ACCTCcattatctttgttatgatatagataaaaggcttgagaagagtaga
acaacagagacttttgtcgaagttttgacgtttttatcaaggtattccca
agaggtatgtcatcaaaatttattgttacattttatgattttaacgaggc
agaaacgaagctagcagtgtttGTTATCTACAAAATACAAAGAAGAtcga
tgtccagtcgtttatatgttcatgtacAGATTTAAAACCTTTCACTcgta
gttgtgtttcgactcgatattATTTATTACGAGACCCTGTACTTTTACAC
GGTGGCTTGtacttttaccttttttatGGTTATACTGTATTGTCACTAAC
ACagagatatcttatataaatctaaaaaaaattgcaagataGATTTGTTA
CGGTTCGGCGCTATTCAATGCCTGAGATATTTTCTCGCCAGTCTTTTGCC
GTCCCTTCTGTGGCACTGTCATGTAGTTGTGATCCTTTATTTGGCACACG
AACAGCTTCATCAAAGCGATGTTTTATTTTATCCATCTTAAAGCAATGGT
ATATATcacgtttttcaaaaaatctgcttTTTGATGAATTAGTACCAGAA
AGTTAGTACTAGCAAGACATAAAATCTctctaataaaaacaaaccaactG
ACggcatgattttttttcaaaaaaaaaatcgcaTGTAAGAGTTCGGGGTA
CTGTAGCTATACGCTATTTCTTTAGGAGGGTGGTTAAGTATCTAGCATAA
GTCTCTTAGTCTGACCATATCAACACACGTCTTTACAGCTTtctcgatga
cgtcattataaCCCAAAGTAGCACAAATTTGGAGGAAATCTACCATTTTA
TAACCTGGTATGTTTGTATTGATCTTGTCAACGAGGTCAGAGGTTGGTTT
AAACTCTCCTTTGAAGGCATTTTGTATATTTGTTATTTGGAAGTCTTGGA
ATTTATCTTTGAAGGTATTTGTTGCATACAGTTCCCACGCGGTTTCTGGG
AGTGCTCGGGAGACTAAATCCAAATCATCTTCACTAAATCCACCAATAGT
CTCGCCTCGTGGCTCTACGTCACTCAATTCGCTAATTTCGTGCTCTTCAA
TACCAATTCTTTTGAACTCTACCCAAGTGAGAGAACCATATTTTTTCTGT
AAAGCTACCAAGAAAGCCCTGTTTTGTTTCGACAACTCGTTATTTATATC
ATTAAGCTCAGGTAATCGATATTTCTCGTCTTCTCTGCCACGATAAATCT
TTTCACCAACGCGATACCATCTTTTATTATGATTCAAATCTGCACTTAGT
TCGTTCCTATTCTTCTGGTTATTGTACACGTCTTTGAATAATAAtgattc
t
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052110-exon-scaffold_210-1491911889:23519..24402 | TCONS_00052110-exon-scaffold_210-1491911889:23519..24402 | Clytia hemisphaerica | exon |
| TCONS_00052110-exon-scaffold_210-1510915933:23519..24402 | TCONS_00052110-exon-scaffold_210-1510915933:23519..24402 | Clytia hemisphaerica | exon |
| TCONS_00052110-exon-scaffold_210-1575043694:23519..24402 | TCONS_00052110-exon-scaffold_210-1575043694:23519..24402 | Clytia hemisphaerica | exon |
| TCONS_00052110-exon-scaffold_210-1491911889:24564..25719 | TCONS_00052110-exon-scaffold_210-1491911889:24564..25719 | Clytia hemisphaerica | exon |
| TCONS_00052110-exon-scaffold_210-1510915933:24564..25719 | TCONS_00052110-exon-scaffold_210-1510915933:24564..25719 | Clytia hemisphaerica | exon |
| TCONS_00052110-exon-scaffold_210-1575043694:24564..25719 | TCONS_00052110-exon-scaffold_210-1575043694:24564..25719 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_210 | supercontig | scaffold_210:23519..25719 + |
Blast
The following BLAST results are available for this feature:
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