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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052136 ID=TCONS_00052136|Name=TCONS_00052136|organism=Clytia hemisphaerica|type=transcript|length=910bp
ACTACATTGAGacatacaaaaatgaaaagatatGTCCTTTATGAAATCAT
TATTCTCAGCAAATTGAACTTTCGGTTTTGTAACTCCAGCAGCAAACCTT
TCTGTGAAATTTTCAATTAGATTCTGAAAAACTTCTTCGTTCTCACAATT
TACTAAGGCTTCCAGTTTTTCTGCCACTTCAAAGTAAGGAATATCCGTGT
AGTTTGGTAGTATAAACTCAACATTTAACAATCTACATGCTATTCCAGGC
AAAAAGTATCTTGGACCAGCAAAACCATTTATCAAAGCCAAGCttatcaa
atttccaaaataatgATATTCCTTCGACTTCATCTTCTCTGTAATGTGAA
GGAAGGTGCAATTATCGGAACTACCAGTAGCAAGAATGTGGTTTCTTGCG
TCAtcaaaaaacaaggaaaaaaacTCTCTCAAAACACCACTTCCATCAGC
TTCTTCAGAATCACCAATAAACTTAACTTTAAAAGGCTTGATGTTTTCTG
CCCAgtgtattttgagtttttgcaTTGTGTCAAGATATATCTTTCTCCTC
CTGATAGTTAAAGTAAACAACTCTTCTGATGATTTGAGCAAATTCAAAAT
TGTTTCTCTTTTACTTTCGTAAGAGTCGACATATGGCAGAGTTTCTTCAA
GATTGATAATTGTCGGTAAAGCTTGTGTTTCTGCTGTTGTGTTGTTAGCT
GTAGAACGTTTGTCTGTAGTTGTTTTGATTTCCACATTTGGCATCAATCG
AGATACATCTCCACTAGTATCAGGAGGATTAGCATCCTCATCAGGGACAT
AGTGATGATTTTCCTCCACATTTGGCAAAAGTTCTTGATAAATTGGTTCA
GGAGGTGGTACGTAATGATCATAAttgtttattttatcatttttgcgAGG
TTGATTTTCT Run BLAST on NCBI protein sequence of TCONS_00052136-protein >TCONS_00052136-protein ID=TCONS_00052136-protein|Name=TCONS_00052136-protein|organism=Clytia hemisphaerica|type=polypeptide|length=303bp
ENQPRKNDKINNYDHYVPPPEPIYQELLPNVEENHHYVPDEDANPPDTSG
DVSRLMPNVEIKTTTDKRSTANNTTAETQALPTIINLEETLPYVDSYESK
RETILNLLKSSEELFTLTIRRRKIYLDTMQKLKIHWAENIKPFKVKFIGD
SEEADGSGVLREFFSLFFDDARNHILATGSSDNCTFLHITEKMKSKEYHY
FGNLISLALINGFAGPRYFLPGIACRLLNVEFILPNYTDIPYFEVAEKLE
ALVNCENEEVFQNLIENFTERFAAGVTKPKVQFAENNDFIKDISFHFCMS
QCS Run BLAST on NCBI transcript from alignment at scaffold_210:32094..33003 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052136 ID=TCONS_00052136|Name=TCONS_00052136|organism=Clytia hemisphaerica|type=transcript|length=910bp|location=Sequence derived from alignment at scaffold_210:32094..33003 (Clytia hemisphaerica)
AGAAAATCAACCTcgcaaaaatgataaaataaacaaTTATGATCATTACG
TACCACCTCCTGAACCAATTTATCAAGAACTTTTGCCAAATGTGGAGGAA
AATCATCACTATGTCCCTGATGAGGATGCTAATCCTCCTGATACTAGTGG
AGATGTATCTCGATTGATGCCAAATGTGGAAATCAAAACAACTACAGACA
AACGTTCTACAGCTAACAACACAACAGCAGAAACACAAGCTTTACCGACA
ATTATCAATCTTGAAGAAACTCTGCCATATGTCGACTCTTACGAAAGTAA
AAGAGAAACAATTTTGAATTTGCTCAAATCATCAGAAGAGTTGTTTACTT
TAACTATCAGGAGGAGAAAGATATATCTTGACACAAtgcaaaaactcaaa
atacacTGGGCAGAAAACATCAAGCCTTTTAAAGTTAAGTTTATTGGTGA
TTCTGAAGAAGCTGATGGAAGTGGTGTTTTGAGAGAgtttttttccttgt
tttttgaTGACGCAAGAAACCACATTCTTGCTACTGGTAGTTCCGATAAT
TGCACCTTCCTTCACATTACAGAGAAGATGAAGTCGAAGGAATATcatta
ttttggaaatttgataaGCTTGGCTTTGATAAATGGTTTTGCTGGTCCAA
GATACTTTTTGCCTGGAATAGCATGTAGATTGTTAAATGTTGAGTTTATA
CTACCAAACTACACGGATATTCCTTACTTTGAAGTGGCAGAAAAACTGGA
AGCCTTAGTAAATTGTGAGAACGAAGAAGTTTTTCAGAATCTAATTGAAA
ATTTCACAGAAAGGTTTGCTGCTGGAGTTACAAAACCGAAAGTTCAATTT
GCTGAGAATAATGATTTCATAAAGGACatatcttttcatttttgtatgtC
TCAATGTAGT Coding sequence (CDS) from alignment at scaffold_210:32094..33003 >TCONS_00052136 ID=TCONS_00052136|Name=TCONS_00052136|organism=Clytia hemisphaerica|type=CDS|length=909bp|location=Sequence derived from alignment at scaffold_210:32094..33003 (Clytia hemisphaerica)
GAAAATCAACCTcgcaaaaatgataaaataaacaaTTATGATCATTACGT
ACCACCTCCTGAACCAATTTATCAAGAACTTTTGCCAAATGTGGAGGAAA
ATCATCACTATGTCCCTGATGAGGATGCTAATCCTCCTGATACTAGTGGA
GATGTATCTCGATTGATGCCAAATGTGGAAATCAAAACAACTACAGACAA
ACGTTCTACAGCTAACAACACAACAGCAGAAACACAAGCTTTACCGACAA
TTATCAATCTTGAAGAAACTCTGCCATATGTCGACTCTTACGAAAGTAAA
AGAGAAACAATTTTGAATTTGCTCAAATCATCAGAAGAGTTGTTTACTTT
AACTATCAGGAGGAGAAAGATATATCTTGACACAAtgcaaaaactcaaaa
tacacTGGGCAGAAAACATCAAGCCTTTTAAAGTTAAGTTTATTGGTGAT
TCTGAAGAAGCTGATGGAAGTGGTGTTTTGAGAGAgtttttttccttgtt
ttttgaTGACGCAAGAAACCACATTCTTGCTACTGGTAGTTCCGATAATT
GCACCTTCCTTCACATTACAGAGAAGATGAAGTCGAAGGAATATcattat
tttggaaatttgataaGCTTGGCTTTGATAAATGGTTTTGCTGGTCCAAG
ATACTTTTTGCCTGGAATAGCATGTAGATTGTTAAATGTTGAGTTTATAC
TACCAAACTACACGGATATTCCTTACTTTGAAGTGGCAGAAAAACTGGAA
GCCTTAGTAAATTGTGAGAACGAAGAAGTTTTTCAGAATCTAATTGAAAA
TTTCACAGAAAGGTTTGCTGCTGGAGTTACAAAACCGAAAGTTCAATTTG
CTGAGAATAATGATTTCATAAAGGACatatcttttcatttttgtatgtCT
CAATGTAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052136-exon-scaffold_210-1491911889:32094..33003 | TCONS_00052136-exon-scaffold_210-1491911889:32094..33003 | Clytia hemisphaerica | exon |
| TCONS_00052136-exon-scaffold_210-1510915933:32094..33003 | TCONS_00052136-exon-scaffold_210-1510915933:32094..33003 | Clytia hemisphaerica | exon |
| TCONS_00052136-exon-scaffold_210-1575043694:32094..33003 | TCONS_00052136-exon-scaffold_210-1575043694:32094..33003 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_210 | supercontig | scaffold_210:32094..33003 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000569 | HECT_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004842 | ubiquitin-protein transferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0004842 |
ubiquitin-protein transferase activity |
Blast
The following BLAST results are available for this feature:
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