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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052137 ID=TCONS_00052137|Name=TCONS_00052137|organism=Clytia hemisphaerica|type=transcript|length=1238bp
GTGCTGGATAAAAGTCGTGAAATCTAACAATGATCCCCTTGTTCCGGGAA
GTCTTTTTTTACAAACTCTGTAATCAAATTAGGAGTTACTCCGGCGAAAC
TAAGAACTGATCTTGGAAATGAAAATGGTATCATGGCAGATTGCCAATGT
TTTCTTACACATAATGTAAAATCTCATTCATACGGTTCTTCAGTGGCTAA
TCAACGAATTGAAAATTATTGGTCACACCTCAAGAGAATGTACATGGCAT
GGGTCATCgacttttttaaagaattggTCGAAAGAGAGTCGTTGGTTTTG
GCAAATTACGTACATAAAGAGTgtgtttggtttgttttttcagaattttt
acaGATCGAATTGGACAGGCTGACGTTAGAGTGGAATTCACATTACATAA
GGGGACAAACTAGAAATGATACCGTGCCAGGGATACCAGATATTTTATTT
CATGCTCCAACCATTTCAGGATACGAAAATCAGGGGAATGAATTGATAAA
TGAAAGGGTGGAAAATTTGTTAGCCCAAAGGGATATTATTTCAGAAGGAA
GAGAGATAATGAATAACATGGATGTAGAACTTGAAGATTATTTTAACTAT
GTAATCGAGACAGAAAATTTACCATATACACCTGCAAATTGGCAAGATGC
TAAACAGATGTATTTGACAATAATAAACGCTTTCTAACACTTTCTGTATA
AAGTATGCATATATTTTACACTAAAAGTATTTCTTCAAAGTTTGGAATAA
AAGTAAATAGAATGTTactaagaaaagtttgaattaTTATTCAGCTACAA
TTAAAATTTGATTCCTCTAATAGTGCTTTCAGATTTAGATACCTATCTTA
AAAATAGACTGACAAAAAGATACTGATACAAGCTCTTCTTATTTCGATAA
ATTGATTCCTGgtgaaaattaaacaaaaagacGTTTCTATGAATTAGATC
TAANTCTCTTATTTCGATAAATTGATTCCTGgtgaaaatttaacaaaaag
acgTTTTTATGGATTAGATCTAAAAGGTAATGACCATATATCAACAAAAC
TATAAAGCAATATGAAATACCTGCAGAGTGTCCTATAATAATTACCTTCT
TCGCATCTTggagaaatatgattttgtttGTATAAAAAGTGACAAAGACA
GTCGTTCGTTTTACAAAAGCTTCTCTCTACCTCATACAATACAATTAAGC
GGTCGTTTATAAATAACAAAAATGTTTTCGATCATCAC Run BLAST on NCBI protein sequence of TCONS_00052137-protein >TCONS_00052137-protein ID=TCONS_00052137-protein|Name=TCONS_00052137-protein|organism=Clytia hemisphaerica|type=polypeptide|length=184bp
MADCQCFLTHNVKSHSYGSSVANQRIENYWSHLKRMYMAWVIDFFKELVE
RESLVLANYVHKECVWFVFSEFLQIELDRLTLEWNSHYIRGQTRNDTVPG
IPDILFHAPTISGYENQGNELINERVENLLAQRDIISEGREIMNNMDVEL
EDYFNYVIETENLPYTPANWQDAKQMYLTIINAF Run BLAST on NCBI transcript from alignment at scaffold_210:34818..36055 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052137 ID=TCONS_00052137|Name=TCONS_00052137|organism=Clytia hemisphaerica|type=transcript|length=1238bp|location=Sequence derived from alignment at scaffold_210:34818..36055 (Clytia hemisphaerica)
GTGATGATCGAAAACATTTTTGTTATTTATAAACGACCGCTTAATTGTAT
TGTATGAGGTAGAGAGAAGCTTTTGTAAAACGAACGACTGTCTTTGTCAC
TTTTTATACaaacaaaatcatatttctccAAGATGCGAAGAAGGTAATTA
TTATAGGACACTCTGCAGGTATTTCATATTGCTTTATAGTTTTGTTGATA
TATGGTCATTACCTTTTAGATCTAATCCATAAAAAcgtctttttgttaaa
ttttcacCAGGAATCAATTTATCGAAATAAGAGANTTAGATCTAATTCAT
AGAAACgtctttttgtttaattttcacCAGGAATCAATTTATCGAAATAA
GAAGAGCTTGTATCAGTATCTTTTTGTCAGTCTATTTTTAAGATAGGTAT
CTAAATCTGAAAGCACTATTAGAGGAATCAAATTTTAATTGTAGCTGAAT
AAtaattcaaacttttcttagtAACATTCTATTTACTTTTATTCCAAACT
TTGAAGAAATACTTTTAGTGTAAAATATATGCATACTTTATACAGAAAGT
GTTAGAAAGCGTTTATTATTGTCAAATACATCTGTTTAGCATCTTGCCAA
TTTGCAGGTGTATATGGTAAATTTTCTGTCTCGATTACATAGTTAAAATA
ATCTTCAAGTTCTACATCCATGTTATTCATTATCTCTCTTCCTTCTGAAA
TAATATCCCTTTGGGCTAACAAATTTTCCACCCTTTCATTTATCAATTCA
TTCCCCTGATTTTCGTATCCTGAAATGGTTGGAGCATGAAATAAAATATC
TGGTATCCCTGGCACGGTATCATTTCTAGTTTGTCCCCTTATGTAATGTG
AATTCCACTCTAACGTCAGCCTGTCCAATTCGATCtgtaaaaattctgaa
aaaacaaaccaaacacACTCTTTATGTACGTAATTTGCCAAAACCAACGA
CTCTCTTTCGAccaattctttaaaaaagtcGATGACCCATGCCATGTACA
TTCTCTTGAGGTGTGACCAATAATTTTCAATTCGTTGATTAGCCACTGAA
GAACCGTATGAATGAGATTTTACATTATGTGTAAGAAAACATTGGCAATC
TGCCATGATACCATTTTCATTTCCAAGATCAGTTCTTAGTTTCGCCGGAG
TAACTCCTAATTTGATTACAGAGTTTGTAAAAAAAGACTTCCCGGAACAA
GGGGATCATTGTTAGATTTCACGACTTTTATCCAGCAC Coding sequence (CDS) from alignment at scaffold_210:34818..36055 >TCONS_00052137 ID=TCONS_00052137|Name=TCONS_00052137|organism=Clytia hemisphaerica|type=CDS|length=555bp|location=Sequence derived from alignment at scaffold_210:34818..36055 (Clytia hemisphaerica)
TTAGAAAGCGTTTATTATTGTCAAATACATCTGTTTAGCATCTTGCCAAT
TTGCAGGTGTATATGGTAAATTTTCTGTCTCGATTACATAGTTAAAATAA
TCTTCAAGTTCTACATCCATGTTATTCATTATCTCTCTTCCTTCTGAAAT
AATATCCCTTTGGGCTAACAAATTTTCCACCCTTTCATTTATCAATTCAT
TCCCCTGATTTTCGTATCCTGAAATGGTTGGAGCATGAAATAAAATATCT
GGTATCCCTGGCACGGTATCATTTCTAGTTTGTCCCCTTATGTAATGTGA
ATTCCACTCTAACGTCAGCCTGTCCAATTCGATCtgtaaaaattctgaaa
aaacaaaccaaacacACTCTTTATGTACGTAATTTGCCAAAACCAACGAC
TCTCTTTCGAccaattctttaaaaaagtcGATGACCCATGCCATGTACAT
TCTCTTGAGGTGTGACCAATAATTTTCAATTCGTTGATTAGCCACTGAAG
AACCGTATGAATGAGATTTTACATTATGTGTAAGAAAACATTGGCAATCT
GCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052137-exon-scaffold_210-1491911889:34818..36055 | TCONS_00052137-exon-scaffold_210-1491911889:34818..36055 | Clytia hemisphaerica | exon |
| TCONS_00052137-exon-scaffold_210-1510915933:34818..36055 | TCONS_00052137-exon-scaffold_210-1510915933:34818..36055 | Clytia hemisphaerica | exon |
| TCONS_00052137-exon-scaffold_210-1575043694:34818..36055 | TCONS_00052137-exon-scaffold_210-1575043694:34818..36055 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_210 | supercontig | scaffold_210:34818..36055 . |
Blast
The following BLAST results are available for this feature:
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