|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052296 ID=TCONS_00052296|Name=TCONS_00052296|organism=Clytia hemisphaerica|type=transcript|length=3860bpRun BLAST on NCBI transcript from alignment at scaffold_213:1172210..1206541+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052296 ID=TCONS_00052296|Name=TCONS_00052296|organism=Clytia hemisphaerica|type=transcript|length=34332bp|location=Sequence derived from alignment at scaffold_213:1172210..1206541+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00052296 vs. Swiss-Prot (Human)
Match: KCNC1 (Potassium voltage-gated channel subfamily C member 1 OS=Homo sapiens GN=KCNC1 PE=1 SV=1) HSP 1 Score: 262.307 bits (669), Expect = 8.150e-76 Identity = 167/465 (35.91%), Postives = 251/465 (53.98%), Query Frame = 3
Query: 285 ADRIVINVGGTRHETFRSTLRVYPDTRLGWLSIDGSDVSDAFDPVLNEYFFDRHPTAFNQIMNFYRTGKLHTPADICGPLFEEELNFWGLDEKAMEPCCWPKYTEHRDAQENLKVFDSPLLNNQHDDDEIEQPAISVSRIPNYKEPEDQGFKSRFLKV-----FRPSYFNSIRWLSKKKLIWAVMEGHSERRPMLSKGVGFISLMFIVLSVLSLFF--HSMLLVISDKAE------------SNHEXXXXXXXXXXXXXXXWMSIELIIRFVSSPNRIQFLISFYTIVDLLTLITYALQFN-HGMDYHRTKDGVIDSNSITTDYKNIEMFSIXXXXXXXXXXXXXXXXQIFKHTIIASSREXXXXXXXXXXPVALFATIVYFFER---------ETNTGKFRTIPESIWWAVITITTVGYGDMSPETTWGKIFGIICAVFSVFILALPVSIIGTNFTLFYNYAQA 1592
++RIVINVGGTRH+T+RSTLR P TRL WL+ + +DP +E+FFDRHP F I+N+YRTGKLH PAD+CGPL+EEEL FWG+DE +EPCCW Y +HRDA+E L F L+N DD + + P S + ED+ ++ L + RP F W + IWA+ E R ++ V F SL FI++S+ + H I +K E L ++ + W + E ++R + PN+++F+ + I+D + ++ + L+ G+ KD V+ + + + +F + R VGL++ HT+ AS+ E LLL++ L L V +FAT++Y+ ER + F+ IP WWAV+T+TT+GYGDM P+T G + G +CA+ V +A+PV +I NF ++Y+ A A
Sbjct: 7 SERIVINVGGTRHQTYRSTLRTLPGTRLAWLAEPDAHSHFDYDPRADEFFFDRHPGVFAHILNYYRTGKLHCPADVCGPLYEEELAFWGIDETDVEPCCWMTYRQHRDAEEALDSFGGAPLDNSADDADADGPGDS-------GDGEDELEMTKRLALSDSPDGRPGGF----WRRWQPRIWALFEDPYSSR--YARYVAFASLFFILVSITTFCLETHERFNPIVNKTEIENVRNGTQVRYYREAETEAFLTYIEGVCVVWFTFEFLMRVIFCPNKVEFIKNSLNIIDFVAILPFYLEVGLSGLSSKAAKD-VLGFLRVVRFVRILRIFKL---------TRHFVGLRVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERIGAQPNDPSASEHTHFKNIPIGFWWAVVTMTTLGYGDMYPQTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMA 448 The following BLAST results are available for this feature:
BLAST of TCONS_00052296 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.