TCONS_00052331 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052331
Unique NameTCONS_00052331
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length807

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052331 ID=TCONS_00052331|Name=TCONS_00052331|organism=Clytia hemisphaerica|type=transcript|length=807bp
CAATTTCCAATTTTGGTCAAAAGTGTGAGAATTTTGATGCAAAGATTAAG
AAGTAAATTGccgaaatttcaaaagaaagtaAAAGGGAATGACATTAACA
CAAAACAGGATTATCCAGTAAAATTGCATTTATTAAGATTTAAGATGTGC
TAATTAAGTGTTACAAGTCATGACTTTAATATACTAGAATGTATTGTCTC
TTGTTTATGATAACTTGTTTAATCAACACCCACCACGGAGTCGCAAGACC
AAGTGAAGGGTTGATTCTTTTTGGATATTATAATCAGAGAGGGTTCGACC
ATCTTCCAATTGTTTGCCAGCAAAGATGAGACGTTGTTGGTCTGGTGGGA
TACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCAATGGTGTCACTT
GGTTCTACTTCCAAGGTGATGGTTTTGCCAGTGAGAGTTTTGACGAAGAT
TTGCATGCCTCCTCTCAATCGTAAGACCAAGTGAAGAGTAGATTCCTTTT
GGATGTTGTAGTCGGACAAGGTGCGGCCATCCTCAAGTTGTTTTCCGGCA
AAGATAAGACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGGATTTT
AGCTTTCACATTGTCGATGGTGTCACTTGGTTCTACTTCCAAAGTGATGG
TCTTTCCAGTAAgggttttgacaaaaatttgcaTGACTACTTCGTTTATA
AAATTGTTGACGTGGAGATTGCTGTTGAcgcttcttttttcttctcgatt
ttgactttgaaagaaaattttcaggtATTTATGCAGAAATGTCATGTGAC
CTTTAAA
Run BLAST on NCBI

transcript from alignment at scaffold_213:220804..221838-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052331 ID=TCONS_00052331|Name=TCONS_00052331|organism=Clytia hemisphaerica|type=transcript|length=1035bp|location=Sequence derived from alignment at scaffold_213:220804..221838- (Clytia hemisphaerica)
CAATTTCCAATTTTGGTCAAAAGTGTGAGAATTTTGATGCAAAGATTAAG
AAGTAAATTGCCGAAATTTCAAAAGAAAGTAAAAGGGAATGACATTAACA
CAAAACAGGATTATCCAGTAAAATTGCATTTATTAAGATTTAAGATGTGC
TAATTAAGTGTTACAAGTCATGACTTTAATATACTAGAATGTATTGTCTC
TTGTTTATGATAACTTGTTTAATCAACACCCACCACGGAGTCGCAAGACC
AAGTGAAGGGTTGATTCTTTTTGGATATTATAATCAGAGAGGGTTCGACC
ATCTTCCAATTGTTTGCCAGCAAAGATGAGACGTTGTTGGTCTGGTGGGA
TACCTTCTTTGTCTTGGATTTTAGCTTTCACATTGTCGATTGTGTCACTT
GGTTCAACTTCCAAGGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGAT
TTGCATACCTCCTCTCAAACGTAAGACCAAGTGGAGAGTAGATTCCTTTT
GGATGTTGTAGTCAGACAAAGTGCGGCCATCCTCAAGTTGTTTACCGGCA
AAGATAAGACGTTGTTGATCTGGTGGGATTCCTTCCTTGTCTTGGATTTT
AGCTTTCACATTGTCAATGGTGTCACTTGGTTCTACTTCCAAGGTGATGG
TTTTGCCAGTGAGAGTTTTGACGAAGATTTGCATGCCTCCTCTCAATCGT
AAGACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAGGT
GCGGCCATCCTCAAGTTGTTTTCCGGCAAAGATAAGACGTTGTTGATCTG
GTGGGATTCCTTCCTTGTCTTGGATTTTAGCTTTCACATTGTCGATGGTG
TCACTTGGTTCTACTTCCAAAGTGATGGTCTTTCCAGTAAGGGTTTTGAC
AAAAATTTGCATGACTACTTCGTTTATAAAATTGTTGACGTGGAGATTGC
TGTTGACGCTTCTTTTTTCTTCTCGATTTTGACTTTGAAAGAAAATTTTC
AGGTATTTATGCAGAAATGTCATGTGACCTTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033090XLOC_033090Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052331-exon-scaffold_213-1575043694:221458..221838TCONS_00052331-exon-scaffold_213-1575043694:221458..221838Clytia hemisphaericaexon
TCONS_00052331-exon-scaffold_213-1575043694:220804..221229TCONS_00052331-exon-scaffold_213-1575043694:220804..221229Clytia hemisphaericaexon
TCONS_00052331-exon-scaffold_213-1510915933:221458..221838TCONS_00052331-exon-scaffold_213-1510915933:221458..221838Clytia hemisphaericaexon
TCONS_00052331-exon-scaffold_213-1510915933:220804..221229TCONS_00052331-exon-scaffold_213-1510915933:220804..221229Clytia hemisphaericaexon
TCONS_00052331-exon-scaffold_213-1491911889:221458..221838TCONS_00052331-exon-scaffold_213-1491911889:221458..221838Clytia hemisphaericaexon
TCONS_00052331-exon-scaffold_213-1491911889:220804..221229TCONS_00052331-exon-scaffold_213-1491911889:220804..221229Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:220804..221838 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1558.65	1536.89	2310.22	2359.26	1417.86	1178.22	1520.91	1570.94	913.396	1409.57	1524.9	1520.25	1097.74	1038.48	867.377	830.191	1131.53	1014.08	1247.69	2017.85	1018.8	1289.84	1506.38	1391.15	1444.95	1458.07	1507.56	1560.94	1318.31	1375.34
Blast
[Close]
BLAST of TCONS_00052331 vs. Swiss-Prot (Human)
Match: UBB (Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 2.199e-104
Identity = 156/188 (82.98%), Postives = 170/188 (90.43%), Query Frame = -1 
Query:  226 KIFFQSQNREEKRSVNS-NLHVNNFINEVV-----MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 771
            ++ F  +  E+ R+++  N+   + ++ V+     MQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
Sbjct:   42 RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 229

HSP 2 Score: 301.597 bits (771), Expect = 2.695e-102
Identity = 150/152 (98.68%), Postives = 152/152 (100.00%), Query Frame = -1 
Query:  229 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 684
            MQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
The following BLAST results are available for this feature:
BLAST of TCONS_00052331 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBB2.199e-10482.98Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1[more]
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