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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052348 ID=TCONS_00052348|Name=TCONS_00052348|organism=Clytia hemisphaerica|type=transcript|length=2852bpRun BLAST on NCBI protein sequence of TCONS_00052348-protein >TCONS_00052348-protein ID=TCONS_00052348-protein|Name=TCONS_00052348-protein|organism=Clytia hemisphaerica|type=polypeptide|length=613bp MPDGKKYELKKTFAGLPRTTRGQPINLKGDPKGKSFTYVNGNSIFIRDVERun BLAST on NCBI transcript from alignment at scaffold_213:529381..538594- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052348 ID=TCONS_00052348|Name=TCONS_00052348|organism=Clytia hemisphaerica|type=transcript|length=9214bp|location=Sequence derived from alignment at scaffold_213:529381..538594- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_213:529381..538594- >TCONS_00052348 ID=TCONS_00052348|Name=TCONS_00052348|organism=Clytia hemisphaerica|type=CDS|length=25788bp|location=Sequence derived from alignment at scaffold_213:529381..538594- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052348 vs. Swiss-Prot (Human)
Match: WDR1 (WD repeat-containing protein 1 OS=Homo sapiens GN=WDR1 PE=1 SV=4) HSP 1 Score: 513.457 bits (1321), Expect = 3.999e-170 Identity = 279/612 (45.59%), Postives = 388/612 (63.40%), Query Frame = 1
Query: 553 YELKKTFAGLPRTTRGQPINLKGDPKGKSFTYVNGNSIFIRDVEDTAECDVYTQHAKETTVATFSPSGFYMASGDVSGKIRIWDLTQKEHLLKYEYQPISGKIKDIAWTEDSKRLAVCGEGREKYAAAFLWDTGSSVGNLNGPAKYCNSIDIKQNRPYRLCLASEDYSSYFYEGPPFKTKDWKTDHSNFVNVCRFSPDGSKYVTAGADGKAFIYDGKTGELIGELNEPSGRIHKGGVYGVAWSADSKKLMTCSADKTVKIWNLSERNYISNKEETVFEMGSAVEDMQVGCAWINDTLLSVSLSGHINFLDVENPKQPKKVIKGHNKAI--IASSFNDDRTLLFTSSFDGSICCWNVATGDAEIISGDGHKSQVSAIHA-KGNTLYTCGIDDTVRYVSIGEKKYENQ-CVKLPSQPQAIAAGNLGLXXXXXXXXXXXIQDGKITNKYET-GSENYAVAVNADLGKVCVGIDESKVLVYDIKGDSLEQFGS-FSTNGRVTDIKFSGDNQYVAISTAKKQVKVVQTSDFKTEKDNWGFHSVKVNGVSWSPGSTHVASCGTDGHAFVYQLGKSHDPIEMRGAHAQSIDVTSIQFKDDSTLLTTGRQDCSIRVWNVT 2370
YE+KK FA LP+ RG + GDPKG +F Y NG + +R++++ A D+YT+HA + VA ++PSGFY+ASGDVSGK+RIWD TQKEHLLKYEYQP +GKIKDIAWTEDSKR+AV GEGREK+ A FLWD+GSSVG + G K NS+DIKQ+RPYRL S+D + F+EGPPFK K DHS FVN RFSPDG+++ TA ADG+ +IYDGKTGE + L + H GG+Y ++WS DS L++ S DKT KIW++S + +S F MGS V D Q+GC W D LLSVSLSG+IN+LD NP +P VIKGH+K+I + N ++ +++ S DG I W+ TG+ + +G GH +QVS + + L +C +DDTVRY S+ + Y Q VKL QP+ +A G G VV C+ ++V+++D + + G E VAV+ V +G + V +Y I G +L+ G G VTD+ +S D ++A+ A K V V +D +E + + H K+ ++WSP + H AS G D +V+ L ++++ AH V+S+ + D+ TL+TT D S++ W +T
Sbjct: 3 YEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNIDNPALADIYTEHAHQVVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVVGEGREKFGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPFKFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCALG--GSKAHDGGIYAISWSPDSTHLLSASGDKTSKIWDVSVNSVVST-----FPMGSTVLDQQLGCLWQKDHLLSVSLSGYINYLDRNNPSKPLHVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETGENDSFAGKGHTNQVSRMTVDESGQLISCSMDDTVRYTSLMLRDYSGQGVVKLDVQPKCVAVGPGGYAVVVCIGQIVLLKDQRKCFSIDNPGYEPEVVAVHPGGDTVAIGGVDGNVRLYSILGTTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFSVADGYSENNVFYGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDPETRVKIQDAHRLH-HVSSLAWLDEHTLVTT-SHDASVKEWTIT 605 The following BLAST results are available for this feature:
BLAST of TCONS_00052348 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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