TCONS_00052349 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052349
Unique NameTCONS_00052349
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length298

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052349 ID=TCONS_00052349|Name=TCONS_00052349|organism=Clytia hemisphaerica|type=transcript|length=298bp
aCCACTCTAATTTTGTTAATGTTTGTCGATTCTCACCTGATGGTTCAAAG
TATGTCACCGCCGGAGCTGACGGGAAAGCTTTCATTTATGACGGTAAGAC
TGGTGAGCTGATCGGAGAATTGAACGAACCAAGTGGAAGGATTCACAAAG
GTGGTGTCTATGGGGTTGCTTGGAGTGCAGACAGTAAAAAATTAATGACA
TGTTCTGCTGACAAGACTGTCAAAATCTGGAACTTGAGTGAAAGAAATTA
CATCTCAAACAAAGAAGAAACGGTATTTGAGATGGGTTCAGCAGTTNG
Run BLAST on NCBI

transcript from alignment at scaffold_213:532357..533006-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052349 ID=TCONS_00052349|Name=TCONS_00052349|organism=Clytia hemisphaerica|type=transcript|length=650bp|location=Sequence derived from alignment at scaffold_213:532357..533006- (Clytia hemisphaerica)
ACCACTCTAATTTTGTTAATGTTTGTCGATTCTCACCTGATGGTTCAAAG
TATGTCACCGCCGGAGCTGACGGGAAAGCTTTCATTTATGACGGTAAGAC
TGGTGAGCTGATCGGAGAATTGAACGAACCAAGTGGAAGGATTCACAAAG
GTGGTGTCTATGGGGTAAGAAACTCCTTCATTTCCAGGGAATCATACCAA
GGTGTCCAACCTTTTATTCCTAACTCAAGATTTCAAACCCAAAGAAAAGA
GTTTTTAATGCATTTTATCCTCTTTCCAATAGATCTGAATAATGAAACCA
GCAACTAAAACAAAATTTGGTTTCTCATTTTCTAGGTTGCTTGGAGTGCA
GACAGTAAAAAATTAATGACATGTTCTGCTGACAAGACTGTCAAAATCTG
GAACTTGAGTGAAAGAAATTACATCTCAAACAAAGAAGAAACGTAAGACA
AAGACTTTTTATTATCATGAGAAAATAATTTTCTGTTTGTTTCTCTCCAA
AAAGTGACTATCTACTGTAATGGATATACTGTGTTCAAGTAATGCTTTAA
AATTTATGACTTTTATATCAAACAGTCCTGTCATTCAGTCATTAGAATAA
AAACCTTTTCTTTTCTTTCTCAGGGTATTTGAGATGGGTTCAGCAGTTNG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033097XLOC_033097Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052349-exon-scaffold_213-1575043694:532843..533006TCONS_00052349-exon-scaffold_213-1575043694:532843..533006Clytia hemisphaericaexon
TCONS_00052349-exon-scaffold_213-1575043694:532565..532671TCONS_00052349-exon-scaffold_213-1575043694:532565..532671Clytia hemisphaericaexon
TCONS_00052349-exon-scaffold_213-1575043694:532357..532383TCONS_00052349-exon-scaffold_213-1575043694:532357..532383Clytia hemisphaericaexon
TCONS_00052349-exon-scaffold_213-1510915933:532843..533006TCONS_00052349-exon-scaffold_213-1510915933:532843..533006Clytia hemisphaericaexon
TCONS_00052349-exon-scaffold_213-1510915933:532565..532671TCONS_00052349-exon-scaffold_213-1510915933:532565..532671Clytia hemisphaericaexon
TCONS_00052349-exon-scaffold_213-1510915933:532357..532383TCONS_00052349-exon-scaffold_213-1510915933:532357..532383Clytia hemisphaericaexon
TCONS_00052349-exon-scaffold_213-1491911889:532843..533006TCONS_00052349-exon-scaffold_213-1491911889:532843..533006Clytia hemisphaericaexon
TCONS_00052349-exon-scaffold_213-1491911889:532565..532671TCONS_00052349-exon-scaffold_213-1491911889:532565..532671Clytia hemisphaericaexon
TCONS_00052349-exon-scaffold_213-1491911889:532357..532383TCONS_00052349-exon-scaffold_213-1491911889:532357..532383Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:532357..533006 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
422.269	416.953	452.63	471.428	44.834	36.556	58.8351	61.4923	51.141	48.5752	55.6242	49.6438	84.9611	137.078	92.7538	86.2357	64.9505	105.09	105.881	125.021	140.109	107.37	211.365	200.745	86.3105	84.2638	140.599	201.675	198.219	192.363
Blast
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BLAST of TCONS_00052349 vs. Swiss-Prot (Human)
Match: WDR1 (WD repeat-containing protein 1 OS=Homo sapiens GN=WDR1 PE=1 SV=4)

HSP 1 Score: 97.4413 bits (241), Expect = 1.562e-24
Identity = 48/98 (48.98%), Postives = 64/98 (65.31%), Query Frame = 3 
Query:    3 HSNFVNVCRFSPDGSKYVTAGADGKAFIYDGKTGELIGELNEPSGRIHKGGVYGVAWSADSKKLMTCSADKTVKIWNLSERNYISNKEETVFEMGSAV 296
            HS FVN  RFSPDG+++ TA ADG+ +IYDGKTGE +  L     + H GG+Y ++WS DS  L++ S DKT KIW++S  + +S      F MGS V
Sbjct:  188 HSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCALG--GSKAHDGGIYAISWSPDSTHLLSASGDKTSKIWDVSVNSVVST-----FPMGSTV 278
The following BLAST results are available for this feature:
BLAST of TCONS_00052349 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR11.562e-2448.98WD repeat-containing protein 1 OS=Homo sapiens GN=... [more]
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