Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052361 ID=TCONS_00052361|Name=TCONS_00052361|organism=Clytia hemisphaerica|type=transcript|length=2561bpRun BLAST on NCBI protein sequence of TCONS_00052361-protein >TCONS_00052361-protein ID=TCONS_00052361-protein|Name=TCONS_00052361-protein|organism=Clytia hemisphaerica|type=polypeptide|length=349bp MLKTFLQLYGTLVVRNLAYSTSTTAMAAHMRAVRIKSFGDPSQLYIEDQERun BLAST on NCBI transcript from alignment at scaffold_213:696029..704764- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052361 ID=TCONS_00052361|Name=TCONS_00052361|organism=Clytia hemisphaerica|type=transcript|length=8736bp|location=Sequence derived from alignment at scaffold_213:696029..704764- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_213:696029..704764- >TCONS_00052361 ID=TCONS_00052361|Name=TCONS_00052361|organism=Clytia hemisphaerica|type=CDS|length=6300bp|location=Sequence derived from alignment at scaffold_213:696029..704764- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052361 vs. Swiss-Prot (Human)
Match: QORX (Quinone oxidoreductase PIG3 OS=Homo sapiens GN=TP53I3 PE=1 SV=2) HSP 1 Score: 252.292 bits (643), Expect = 1.264e-75 Identity = 150/335 (44.78%), Postives = 205/335 (61.19%), Query Frame = 3 Query: 117 MRAVRIKSFGDPSQLYIED-QEPIPQLASNHDVLLHVAATALNRADTLQRKGGYNPPKGASDILGLEASGVIEKIGSNVQG-FKEGDRVMALLAG---MDYIS-----------------AAAIPEVWLTAYQLLHKVSAIQPNERVLVHAAGSGVGTAAIQLIKGLPGTQVIATAGSAAKLEKAKSLGADVLVNYKEEKFSERVMDATNKQGVDIILDPVGGSNVDQNLASIAMDGRWVLYGLMGGPKASNDKFLALMLRKRVQLLSSTLRARSLDYKKDLVDSFENHALEKF-VSGEYK--PIIDSITTLDGVADAHRRMDANLNSGKIIMKV 1046 M AV G P LY+++ +P P +VLL VAA+ALNRAD +QR+G Y+PP GAS+ILGLEASG + ++G QG +K GD MALL G Y++ AAAIPE WLTA+QLLH V +Q + VL+HA SGVGTAAIQL + + G + TAGS KL+ A+ LGA NYK+E FSE + T GV++ILD +GGS ++N+ +A+DGRWVLYGLMGG N + +L KR L++S LR+R YK+ LV++F L F G + P++D I + + +AH+ M+AN N GKI++++ Sbjct: 1 MLAVHFDKPGGPENLYVKEVAKPSP---GEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELGPGCQGHWKIGDTAMALLPGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTR-MAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGRWVLYGLMGGGDI-NGPLFSKLLFKRGSLITSLLRSRDNKYKQMLVNAFTEQILPHFSTEGPQRLLPVLDRIYPVTEIQEAHKYMEANKNIGKIVLEL 330 The following BLAST results are available for this feature:
BLAST of TCONS_00052361 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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