TCONS_00052398 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052398
Unique NameTCONS_00052398
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length295

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052398 ID=TCONS_00052398|Name=TCONS_00052398|organism=Clytia hemisphaerica|type=transcript|length=295bp
CTCCTGTCTAGTTTGCAAAGAATGGCACATTTGCTTGCTCAAGATCTCGA
GTGCATAACTCGGAAAAAATTAGAATAAAAACAAGATGAGTTCAACAGAA
GATCTAACATCGAAATACCAAAGACTTGGGCAGGAATACCAAAAGgCAAG
AGCGCAAATCACTGTTTTGAAAAAGGGTGTGGTTGATGAGCAAACATCAA
ATAAAGTTTTGCAGGATGCCTTGAAACAGAAGGATCAGACAACAAGAAAA
TATGAACAAGATATTGATAGTTTGCAGTTTCGTAATTCACAGGTA
Run BLAST on NCBI

transcript from alignment at scaffold_213:1334464..1338983-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052398 ID=TCONS_00052398|Name=TCONS_00052398|organism=Clytia hemisphaerica|type=transcript|length=4520bp|location=Sequence derived from alignment at scaffold_213:1334464..1338983- (Clytia hemisphaerica)
CTCCTGTCTAGTTTGCAAAGAATGGCACATTTGCTTGCTCAAGATCTCGA
GTGCATAACTCGGAAAAAGTTGAGTGCAATTCGTTTGATATTCGTTTGAT
ATTCTCAAATTTGTGTTTTACACAACATACTCTATTGGCTTCCAATAGTT
TGCAGACCCAAACTTAACCGCTTCACACACAGAGGCCCAAGTTGTCATAT
TCGCATAATTAAGATTTTGCGGTGTAGCAATTTTAGAGAGAGCACACTGT
TTTTGTGACTACTTTTGGAATTGGAAACTATTTGAAGCCAATAGAGTATG
TTACCAAGAAGAGTAATTGTGTAAAATTTGACCACTCAACCAGCAAAAAT
CGCCAGTGAGACCAATTGAGGCCTCTACATTTTTTTTTTTGGACCTACCC
CGGTGGAGGTCCTATAAATTAACCTGTGTTTGTTCGTCCGTTTGTCCGTC
CGTTCCTTCGTTCGTTCGTCTGTTACCAACTTTTCTCAGGATTGAATGAT
AGGAATCTTTGGTGGTCTAAAATGGTGGTACCCAAAATGTGACGGAGCCT
GATTTTCGAAAAAAAAAATTTTGGGGCAAATTTGGGCCAAAAAACAGCTA
AAAAACGGGTTTTTTAGACTTTATGAAAAATTGGATCATTAATTTTTTCT
GATTTTTTGTATGAAAGTAGGGTACCATAGTTAAAAGATGGCTCAAGCAG
ATTTTTGCAAAAAAATTTTGTTGGCTCAAAAAAAGCATGTTTATCTATAA
GAATCACTATTAACAAGCATACATCAATGTTCTTAGTCAAATTACTGAAT
TTTTTTATGAGATAGATGTTTTTTTTGCTCACGAGGGCTTACATTTGAAG
CATATGTGTGTTTAGACATGAAATTTTGGTTGCTTGGCGTGTTTTTATAT
AAAAACTGGCCAAATTCGATATTTTTTTATAAGCACATTATCAATTACTT
AGGTATTAGCTTTTCTCGAGATTGGCTCTTTCATTCTTAATGATTTTTTG
CACAAAGATGCATAACTTTAAACCCTTATTTGTGACGGAGCCTGATTTTC
GAAAAAAAATGTTTTTGGGCAAATTTTGGCCAAAAACGGCTAAAAAAAAG
GTTTTTTGGACTTTGTGAAAAATTGAATCATTGTTTTTTTTTCTGATTTT
TTACATGAAAGTAGGTAAAAGATGGCTCAAGCAGATTTTTATAAAAAAAG
AATTTTTCAGCTCGAAAAAGGCATCTTTATTACAAGAATCACAATTAATA
AGCATACATCAATGTTCTCGGTAAAAACATTGTGAATTTTGATATCAGAA
GTGAAATATCGGGAGGTCGTCAGTAGTCCGACACTTTCTAGTCCGACAGT
AAAAATGTCCGACGTTGGATTTGACGAAAGTGTCAGTATTCCGACAACAA
TTTTGTCCGACAACGAGTCAAAAAAAAACATATAAAAATCGAAATATGAA
TCGTGGAAGAGGAAACACATTTTTTCCTAATTTGAGGTTAGGCCCCTAAA
CCCGACTTGTCTTAAATTTTGGAAAGCTTGTTAGGATTAGGCTTTCAAGA
GTCAAGAGATTGGATTTAGCTGTTTTTACGACCCTTCTTTAGTGATTTAC
AACCCTGATTGGTCCTTTATTTCTACTTATGCCAAAATGTCGCCAAAATA
AACTTTTATTAATATTATCTCAGAGAAAAACCCTTATTCAACATTCGACA
CTCTAAAATCTTGCGTTTTCGGACAAAAGTGACGTCGGAAAAAAAGACTT
CCAAATTGTAAATTTATTTTATAGATTCGGACTATTTTACTGTCGGACTA
GAAAATGTCGGACTAGTGACATGCACCCGAAATATCAACGATGTAACTTC
ATTTTATTTTTATTTTACTTGACAATATATTTCGATACTTTTTCGATACT
ACATCAATGTTCTTAGCCAAATTACTCAATTTTTTAATGAGATAGATGTT
TTTTTTTGCTCACAAAGTCTTGAATATGAAAGATTATTTCAAGAACATGA
AATTTTGGTTTCTAAACATTTTTTTTATAACAAACAAACGACTAATTTTG
ATAGATCGTCACTATTTGTGTTCTGAATGATTATTTAACGGTCATGATCA
CGTAGATATCAATTATATTTGTTAAATGCATAACCAGGTAGGTCCATAAA
AGTATCACTTGTTTTTTTTTTATTTATTCTTTATTTAGAGTATAGGGTAC
TAAAAAATCTAGATTTTACAAATGAATGTAAAGTCTAATTAACAACAGTC
TAATTACAGCCCTCCAAAGCCCCCCATAGCCCTTCGCACCCCTTCAGATA
CCCTCTGCCTTGCTCTGCCTCAAAGCCAGCATCTTCCATTAGTGCTCCAA
AGCCTTTAAAAGGCTTGAAAATTGGCGAAAATTGGTCAAAATTAGAAAAA
ATGACCTCCTTTGGGTACCACCTGGTACCACCGTGGACGGCCCCTGGAGG
TCCCGGCCTAGGTTTCGGGGAGTTCGATTGGTGCCCACTGGTCAGGGTGT
GAGGGTACACGTCTGCACCAGCGAGGGTGCTTCAAAGTTCCTCAAAGTGT
CGTCAATGGCCGGCAAAAAGTGCGACCAAATTACGTGCATGTGGAGCCTT
CAGTTGCTCGGGTTTTCTCAAATTTTTGTTTGATTAAACTTGACAAAATT
CGATTAAGTTCAATTAGTTTGATTAAGTTTGATTAATGTAATCAAACTAA
ACGAACTATCCAGGTCTCTTTAAAAAAATTAATCAAACTTAATCGAACTT
TGTATTTTGAGAAATTTGTGAATATTCGATTAAAGTTCAACAACCGAACT
TAGTCGAACATTAATCGGCCAACAAAGTTCGATTAAGTTCGACAAAGCTC
GATTAAAAATACCATTTGATTAGTTCGATTAATTACGTCTGGTTTCAGGT
GCAAGTTCAGATGGTTTCGGATTTTTAAAAGTAATTTTTTCAATTTTTCG
TTGCTCAATAACATGAAAAGTTCTAAAATAATATGTTAAAAGATCCTGCA
TCGATGCCGAAACACAGACAGAAAGTGATAACAAAACCCCCGTTGTAAAT
TTGTTTACACATGACTTGATTTTGCTCCCAATTTTGCTATCTGCATTTCC
AACAAAAACCAGTTGAAAACAAAACTAAACAAGGCAATGTGGGCCTACTT
ATTGCGAGGTTGTCAAATACCACGTGTTCAATAATAAAATCAATTTTTAT
TTCCAAAAACAGGTCAGCCAGGGCGGGCAGGCTAGGGGGGGGGGGGGGGA
AGGGGGGGGGGGGGGGGGGTGGGGGGGGGTGGGGTCTATCCGTGTTTAAA
TAACTTGGTTAGGTATTCAGAATTAAGGATTAGGGATTCGCAATTAGGGA
TTAGGGATTCGCAATTAAGGATTAGGGATTCAGACAAATTTCCATGGTTT
TGAGCTGCTACTGTTTTCTACTTTAAATATTGAGTTTGAATTCAGTTCAA
TACTTCAAAGAAAAATAACCAACCTAGGCTCTGTTTAATTAAGTTGGGAA
CTATTTAAAAAAAAAAGAGTTAACCTCAGAATGGGCTTTTTCTGTTAATA
AGGGCCTGTAAAGCAACTAATCAAGTTGGTCTCACCTTAGATTAGAATAA
AAACAAGATGAGTTCAACAGAAGATCTAACATCGAAATACCAAAGACTTG
GGCAGGAATACCAAAAGGTAATTATTCGTTTTAGTTCTAGATTAATTAAT
TATTTTTTTTATCTATATTACCTAAATTATTTATCAAGTTTATTTTGATG
TATATTTTTTCATATAATCCATCTATTTAAAATTTTCCAGGCAGTTTTTT
TCAGGTATATTACAGAGTAATCCTAAATTCAGAAAGAGACTTCATAATAA
CTTTGATTATATGGCATTTCTATTATATATTTTTTCAGGCAAGAGCGCAA
ATCACTGTTTTGAAAAAGGGTGTGGTTGATGAGCAAACATCAAATAAAGT
TTTGCAGGTATAAACCAAACTTTTACATCATGAATGATAACCTCTGGATA
CGCTCAAATCAACTTTAGATTAGCCCATTAATCTTAAGCAAAAAAGTACT
TATATATTGACAATAATCTCTGCCGCATCTTTGAATAAATTGAAATAGTA
AGATGATTTTAAATAGTAACTATTCATTATGGGGTTTAATTTTCATTTGA
ACTCTGGTTGGAATTTGAAAACAAACAAACAAAAAAGCTTGAAGTCAATA
TAGAAGAGCAAGTGACCTGTCTTTCTCATACTTTATTGTGAAAAACTGAA
AGGACTTTATGAATAATAGTGTACTTTAAATAATATGAGACAAACAAATC
TGAAAATTAAAAACTGGAAACAGATTCTATCTGAATGTCGGAACGTTTTG
CTAAGCCTGAAAATTTCAAAAAATTGAGAATAAACATTTACTTATTCTGT
TCACTAAAACTAAGTTTCTCTTCATTTTTCTTATCACAGGATGCCTTGAA
ACAGAAGGATCAGACAACAAGAAAATATGAACAAGATATTGATAGTTTGC
AGTTTCGTAATTCACAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033124XLOC_033124Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052398-exon-scaffold_213-1575043694:1338916..1338983TCONS_00052398-exon-scaffold_213-1575043694:1338916..1338983Clytia hemisphaericaexon
TCONS_00052398-exon-scaffold_213-1575043694:1335317..1335393TCONS_00052398-exon-scaffold_213-1575043694:1335317..1335393Clytia hemisphaericaexon
TCONS_00052398-exon-scaffold_213-1575043694:1335027..1335095TCONS_00052398-exon-scaffold_213-1575043694:1335027..1335095Clytia hemisphaericaexon
TCONS_00052398-exon-scaffold_213-1575043694:1334464..1334544TCONS_00052398-exon-scaffold_213-1575043694:1334464..1334544Clytia hemisphaericaexon
TCONS_00052398-exon-scaffold_213-1510915933:1338916..1338983TCONS_00052398-exon-scaffold_213-1510915933:1338916..1338983Clytia hemisphaericaexon
TCONS_00052398-exon-scaffold_213-1510915933:1335317..1335393TCONS_00052398-exon-scaffold_213-1510915933:1335317..1335393Clytia hemisphaericaexon
TCONS_00052398-exon-scaffold_213-1510915933:1335027..1335095TCONS_00052398-exon-scaffold_213-1510915933:1335027..1335095Clytia hemisphaericaexon
TCONS_00052398-exon-scaffold_213-1510915933:1334464..1334544TCONS_00052398-exon-scaffold_213-1510915933:1334464..1334544Clytia hemisphaericaexon
TCONS_00052398-exon-scaffold_213-1491911889:1338916..1338983TCONS_00052398-exon-scaffold_213-1491911889:1338916..1338983Clytia hemisphaericaexon
TCONS_00052398-exon-scaffold_213-1491911889:1335317..1335393TCONS_00052398-exon-scaffold_213-1491911889:1335317..1335393Clytia hemisphaericaexon
TCONS_00052398-exon-scaffold_213-1491911889:1335027..1335095TCONS_00052398-exon-scaffold_213-1491911889:1335027..1335095Clytia hemisphaericaexon
TCONS_00052398-exon-scaffold_213-1491911889:1334464..1334544TCONS_00052398-exon-scaffold_213-1491911889:1334464..1334544Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:1334464..1338983 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.9598	22.618	13.2572	10.4891	25.6313	26.1446	30.0424	32.4743	10.129	17.7591	14.3189	13.5465	10.3176	19.8004	22.4906	18.4037	13.2209	19.5414	15.52	12.7481	12.9401	9.21946	13.2197	20.6693	20.8718	20.8641	6.30406	3.33536	13.4008	16.0381
Blast
[Close]
BLAST of TCONS_00052398 vs. Swiss-Prot (Human)
Match: PPR21 (Protein phosphatase 1 regulatory subunit 21 OS=Homo sapiens GN=PPP1R21 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.193e-17
Identity = 41/70 (58.57%), Postives = 52/70 (74.29%), Query Frame = 2 
Query:   86 MSSTEDLTSKYQRLGQEYQKARAQITVLKKGVVDEQTSNKVLQDALKQKDQTTRKYEQDIDSLQFRNSQV 295
            M+S E L  KYQ+L QEY K RAQ  VLKKGVVDEQ ++  L++ LK KDQ+ RK +Q++DSL FRN Q+
Sbjct:    1 MASAE-LQGKYQKLAQEYSKLRAQNQVLKKGVVDEQANSAALKEQLKMKDQSLRKLQQEMDSLTFRNLQL 69
The following BLAST results are available for this feature:
BLAST of TCONS_00052398 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PPR212.193e-1758.57Protein phosphatase 1 regulatory subunit 21 OS=Hom... [more]
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