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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052401 ID=TCONS_00052401|Name=TCONS_00052401|organism=Clytia hemisphaerica|type=transcript|length=1491bp
ATACCGAGATGATTTTGAAATACCGAGTACCGATCATTTTTTTCctgtaa
taccgatttaccgatcTAAAAAAAGGCCAATNATATGTCTCGGTGAAGTA
TcaatgaatttaaaagaaacagTTAAATGTGAACGTTCTTTAGCCGCTTG
TATTTGCAGTCTCCTCAAATAAACTTTCGTGTTTTTCTTGGGTCGAAAGA
TGATCAGATACATCTTATAGCCATAcatgaataaataaatcaacAAATTA
TTTCCAGCCACAAATAACATTTGCACGACTGAGACATCAAGTTGATTCTT
TTGGAAATGACTGATAGGATACATTACGGTGAAGGAGATTGTGACAGCAA
ATGAACCAATTGCAATACTGGTTGCTTCACTCAGATATCCTGGCAAGTGA
CGATATTGGTAAGCTCGGTAACTGCATGCCAAATGTAAACAGATGGTGTA
TACTATCAATACACTGAAGTGCAAATTGTTGTCGcagtaaaatatttctt
ccttTCTTTTAAAGTTCGTTTCTGGGAGCACCTTTGGTAATTTTTTGTAT
AGTAATATCGCCAAAATGCATAATCCAAGGAAAGTGTTGATCATAAAAAT
CGAGATTTGCTGTATTGAAGTTCTCTGCACATCTCGACCAGTAGTTCGTA
TATCGCTGGAGAAAGCATTTAAAAGTTTCATACATTTGATGAAAATAAAG
CTGATACTATTATTATAAAGTAAAACTATGATTCCAAGACGAGTTATACA
TTTGGCTTCATTTGGTTGGTCGAAATAAACCAATGGCAACACGATAGAAG
TGGTTGCTAGGAAACAGAGGTGAAGGAACGATAACTTTGAGTCTGAGAGC
ATAACAATAGGTGATTTTCGATTCTTCAGGAAAACACATAAAGTGGACAA
TGGGAAAATGGCTCCCATGATACACAAAGTAATAAGGATAACACCAATTC
GCCTTTCAACTTCTAAATAAGCAGATTTCAACGGATTTATACAAGATGTT
CGATCAGCGTTGGGAACATAGAATCCATAACATGATTGACAAGGACCGTC
ACCGTAGGTCGATTTGAATTCATCCATAGGACAGGGTTTACAAAAATATC
CAACTTCCTCATCCCATAAAGACAAAGGGACAACTCCAAAAACTTTTCTG
AATCCTGGTTTACATACGATGTCTGTACAATTATTTGTCAAAGATTCTTT
GGTTCGATTCTCATTGACTGGTTTAAATCCTAAGAAATCTCCCTCTTTTG
TTCTAGTGAGATTGGATTTCAAAATTGCTCTGTATTCTTGGTGAGACATT
GAAGGAGGGCGTTTGATATAATCGAGAGCGAAGAAAAAGTAAGCCACCAA
ATTACTGATTTCGAATCTAAACTTTTGATAGTCTGGATTTGAAGTCAAAG
ATGGTATTTGTTCCAGAAAAGAATATTGAGATAATTTGCGAAAGATATTG
ATGAAAGGTGCTCCGACGATATTGTTCGGTAAGGATTCGTT Run BLAST on NCBI protein sequence of TCONS_00052401-protein >TCONS_00052401-protein ID=TCONS_00052401-protein|Name=TCONS_00052401-protein|organism=Clytia hemisphaerica|type=polypeptide|length=477bp
NESLPNNIVGAPFINIFRKLSQYSFLEQIPSLTSNPDYQKFRFEISNLVA
YFFFALDYIKRPPSMSHQEYRAILKSNLTRTKEGDFLGFKPVNENRTKES
LTNNCTDIVCKPGFRKVFGVVPLSLWDEEVGYFCKPCPMDEFKSTYGDGP
CQSCYGFYVPNADRTSCINPLKSAYLEVERRIGVILITLCIMGAIFPLST
LCVFLKNRKSPIVMLSDSKLSFLHLCFLATTSIVLPLVYFDQPNEAKCIT
RLGIIVLLYNNSISFIFIKCMKLLNAFSSDIRTTGRDVQRTSIQQISIFM
INTFLGLCILAILLYKKLPKVLPETNFKRKEEIFYCDNNLHFSVLIVYTI
CLHLACSYRAYQYRHLPGYLSEATSIAIGSFAVTISFTVMYPISHFQKNQ
LDVSVVQMLFVAGNNLLIYLFMYGYKMYLIIFRPKKNTKVYLRRLQIQAA
KERSHLTVSFKFIDTSPRHXIGLFLDR Run BLAST on NCBI transcript from alignment at scaffold_213:9690..11180 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052401 ID=TCONS_00052401|Name=TCONS_00052401|organism=Clytia hemisphaerica|type=transcript|length=1491bp|location=Sequence derived from alignment at scaffold_213:9690..11180 (Clytia hemisphaerica)
AACGAATCCTTACCGAACAATATCGTCGGAGCACCTTTCATCAATATCTT
TCGCAAATTATCTCAATATTCTTTTCTGGAACAAATACCATCTTTGACTT
CAAATCCAGACTATCAAAAGTTTAGATTCGAAATCAGTAATTTGGTGGCT
TACTTTTTCTTCGCTCTCGATTATATCAAACGCCCTCCTTCAATGTCTCA
CCAAGAATACAGAGCAATTTTGAAATCCAATCTCACTAGAACAAAAGAGG
GAGATTTCTTAGGATTTAAACCAGTCAATGAGAATCGAACCAAAGAATCT
TTGACAAATAATTGTACAGACATCGTATGTAAACCAGGATTCAGAAAAGT
TTTTGGAGTTGTCCCTTTGTCTTTATGGGATGAGGAAGTTGGATATTTTT
GTAAACCCTGTCCTATGGATGAATTCAAATCGACCTACGGTGACGGTCCT
TGTCAATCATGTTATGGATTCTATGTTCCCAACGCTGATCGAACATCTTG
TATAAATCCGTTGAAATCTGCTTATTTAGAAGTTGAAAGGCGAATTGGTG
TTATCCTTATTACTTTGTGTATCATGGGAGCCATTTTCCCATTGTCCACT
TTATGTGTTTTCCTGAAGAATCGAAAATCACCTATTGTTATGCTCTCAGA
CTCAAAGTTATCGTTCCTTCACCTCTGTTTCCTAGCAACCACTTCTATCG
TGTTGCCATTGGTTTATTTCGACCAACCAAATGAAGCCAAATGTATAACT
CGTCTTGGAATCATAGTTTTACTTTATAATAATAGTATCAGCTTTATTTT
CATCAAATGTATGAAACTTTTAAATGCTTTCTCCAGCGATATACGAACTA
CTGGTCGAGATGTGCAGAGAACTTCAATACAGCAAATCTCGATTTTTATG
ATCAACACTTTCCTTGGATTATGCATTTTGGCGATATTACTATACAAAAA
ATTACCAAAGGTGCTCCCAGAAACGAACTTTAAAAGAaaggaagaaatat
tttactgCGACAACAATTTGCACTTCAGTGTATTGATAGTATACACCATC
TGTTTACATTTGGCATGCAGTTACCGAGCTTACCAATATCGTCACTTGCC
AGGATATCTGAGTGAAGCAACCAGTATTGCAATTGGTTCATTTGCTGTCA
CAATCTCCTTCACCGTAATGTATCCTATCAGTCATTTCCAAAAGAATCAA
CTTGATGTCTCAGTCGTGCAAATGTTATTTGTGGCTGGAAATAATTTgtt
gatttatttattcatgTATGGCTATAAGATGTATCTGATCATCTTTCGAC
CCAAGAAAAACACGAAAGTTTATTTGAGGAGACTGCAAATACAAGCGGCT
AAAGAACGTTCACATTTAActgtttcttttaaattcattgATACTTCACC
GAGACATATNATTGGCCTTTTTTTAgatcggtaaatcggtattacagGAA
AAAAATGATCGGTACTCGGTATTTCAAAATCATCTCGGTAT Coding sequence (CDS) from alignment at scaffold_213:9690..11180 >TCONS_00052401 ID=TCONS_00052401|Name=TCONS_00052401|organism=Clytia hemisphaerica|type=CDS|length=1434bp|location=Sequence derived from alignment at scaffold_213:9690..11180 (Clytia hemisphaerica)
AACGAATCCTTACCGAACAATATCGTCGGAGCACCTTTCATCAATATCTT
TCGCAAATTATCTCAATATTCTTTTCTGGAACAAATACCATCTTTGACTT
CAAATCCAGACTATCAAAAGTTTAGATTCGAAATCAGTAATTTGGTGGCT
TACTTTTTCTTCGCTCTCGATTATATCAAACGCCCTCCTTCAATGTCTCA
CCAAGAATACAGAGCAATTTTGAAATCCAATCTCACTAGAACAAAAGAGG
GAGATTTCTTAGGATTTAAACCAGTCAATGAGAATCGAACCAAAGAATCT
TTGACAAATAATTGTACAGACATCGTATGTAAACCAGGATTCAGAAAAGT
TTTTGGAGTTGTCCCTTTGTCTTTATGGGATGAGGAAGTTGGATATTTTT
GTAAACCCTGTCCTATGGATGAATTCAAATCGACCTACGGTGACGGTCCT
TGTCAATCATGTTATGGATTCTATGTTCCCAACGCTGATCGAACATCTTG
TATAAATCCGTTGAAATCTGCTTATTTAGAAGTTGAAAGGCGAATTGGTG
TTATCCTTATTACTTTGTGTATCATGGGAGCCATTTTCCCATTGTCCACT
TTATGTGTTTTCCTGAAGAATCGAAAATCACCTATTGTTATGCTCTCAGA
CTCAAAGTTATCGTTCCTTCACCTCTGTTTCCTAGCAACCACTTCTATCG
TGTTGCCATTGGTTTATTTCGACCAACCAAATGAAGCCAAATGTATAACT
CGTCTTGGAATCATAGTTTTACTTTATAATAATAGTATCAGCTTTATTTT
CATCAAATGTATGAAACTTTTAAATGCTTTCTCCAGCGATATACGAACTA
CTGGTCGAGATGTGCAGAGAACTTCAATACAGCAAATCTCGATTTTTATG
ATCAACACTTTCCTTGGATTATGCATTTTGGCGATATTACTATACAAAAA
ATTACCAAAGGTGCTCCCAGAAACGAACTTTAAAAGAaaggaagaaatat
tttactgCGACAACAATTTGCACTTCAGTGTATTGATAGTATACACCATC
TGTTTACATTTGGCATGCAGTTACCGAGCTTACCAATATCGTCACTTGCC
AGGATATCTGAGTGAAGCAACCAGTATTGCAATTGGTTCATTTGCTGTCA
CAATCTCCTTCACCGTAATGTATCCTATCAGTCATTTCCAAAAGAATCAA
CTTGATGTCTCAGTCGTGCAAATGTTATTTGTGGCTGGAAATAATTTgtt
gatttatttattcatgTATGGCTATAAGATGTATCTGATCATCTTTCGAC
CCAAGAAAAACACGAAAGTTTATTTGAGGAGACTGCAAATACAAGCGGCT
AAAGAACGTTCACATTTAActgtttcttttaaattcattgATACTTCACC
GAGACATATNATTGGCCTTTTTTTAgatcggtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052401-exon-scaffold_213-1491911889:9690..11180 | TCONS_00052401-exon-scaffold_213-1491911889:9690..11180 | Clytia hemisphaerica | exon |
| TCONS_00052401-exon-scaffold_213-1510915933:9690..11180 | TCONS_00052401-exon-scaffold_213-1510915933:9690..11180 | Clytia hemisphaerica | exon |
| TCONS_00052401-exon-scaffold_213-1575043694:9690..11180 | TCONS_00052401-exon-scaffold_213-1575043694:9690..11180 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:9690..11180 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017978 | GPCR_3_C |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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