TCONS_00052407 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052407
Unique NameTCONS_00052407
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length320

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052407 ID=TCONS_00052407|Name=TCONS_00052407|organism=Clytia hemisphaerica|type=transcript|length=320bp
AGATGATGCTTAAAATCCATGACATACAACAACAAACATTATCTGatata
aaaacattatcttaaaaaatctcaataatCCCAGAAGATAATGGGTTGTA
AACCATAAAACTATATTATCTGTTGTACCAAATCATAGAAATAAAAACTA
TTTCATTCACATCTCGATTTTTTGACTTCTTTGACCTTCAGAAATCTGAC
TTCGTTATTTACATTATCTCCCTGTTACAGCTTAAGGTCTCTATTTCTTT
ATAAATCTTATCGGCAGTACTCTGACctaatatatttttctttgtttttg
tttttcttttctttttttca
Run BLAST on NCBI

transcript from alignment at scaffold_213:236352..236671

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052407 ID=TCONS_00052407|Name=TCONS_00052407|organism=Clytia hemisphaerica|type=transcript|length=320bp|location=Sequence derived from alignment at scaffold_213:236352..236671 (Clytia hemisphaerica)
tgaaaaaaagaaaagaaaaacaaaaacaaagaaaaatatattagGTCAGA
GTACTGCCGATAAGATTTATAAAGAAATAGAGACCTTAAGCTGTAACAGG
GAGATAATGTAAATAACGAAGTCAGATTTCTGAAGGTCAAAGAAGTCAAA
AAATCGAGATGTGAATGAAATAGTTTTTATTTCTATGATTTGGTACAACA
GATAATATAGTTTTATGGTTTACAACCCATTATCTTCTGGGattattgag
attttttaagataatgtttttatatCAGATAATGTTTGTTGTTGTATGTC
ATGGATTTTAAGCATCATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033132XLOC_033132Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052407-exon-scaffold_213-1491911889:236352..236671TCONS_00052407-exon-scaffold_213-1491911889:236352..236671Clytia hemisphaericaexon
TCONS_00052407-exon-scaffold_213-1510915933:236352..236671TCONS_00052407-exon-scaffold_213-1510915933:236352..236671Clytia hemisphaericaexon
TCONS_00052407-exon-scaffold_213-1575043694:236352..236671TCONS_00052407-exon-scaffold_213-1575043694:236352..236671Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:236352..236671 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.958741	0.311641	0.72369	0.354009	0	0	0	1.15396	0.269304	0.333577	0.971333	0	0.637628	0.662183	0.362937	0.58423	1.19954	0.245898	1.6986	1.06648	0.617977	0	0.732849	0	0	0	0.876416	0.467667	0.354709	1.08418
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052407 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top