TCONS_00052410 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052410
Unique NameTCONS_00052410
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length228

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052410 ID=TCONS_00052410|Name=TCONS_00052410|organism=Clytia hemisphaerica|type=transcript|length=228bp
CCAGGCTCCAACGATTATTTGAACTTTTCATCACTCCCATTGGAGCTGTG
TAACAGTGGAACTGTGGAAGTTTTTTATGTTCTGTAAATTTGTAATTTGT
TCAGCTGTAATTTATTATGTCTTTAAATTTTCACTCAATATTGAGTTTTG
AGTTTCAGATGTTAGATATTTAAACATTTTAGTTTATTAAAAGTTGAAAT
ATTGAATAATCTTGGAACTATATTCACA
Run BLAST on NCBI

transcript from alignment at scaffold_213:342665..342892

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052410 ID=TCONS_00052410|Name=TCONS_00052410|organism=Clytia hemisphaerica|type=transcript|length=228bp|location=Sequence derived from alignment at scaffold_213:342665..342892 (Clytia hemisphaerica)
TGTGAATATAGTTCCAAGATTATTCAATATTTCAACTTTTAATAAACTAA
AATGTTTAAATATCTAACATCTGAAACTCAAAACTCAATATTGAGTGAAA
ATTTAAAGACATAATAAATTACAGCTGAACAAATTACAAATTTACAGAAC
ATAAAAAACTTCCACAGTTCCACTGTTACACAGCTCCAATGGGAGTGATG
AAAAGTTCAAATAATCGTTGGAGCCTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033135XLOC_033135Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052410-exon-scaffold_213-1491911889:342665..342892TCONS_00052410-exon-scaffold_213-1491911889:342665..342892Clytia hemisphaericaexon
TCONS_00052410-exon-scaffold_213-1510915933:342665..342892TCONS_00052410-exon-scaffold_213-1510915933:342665..342892Clytia hemisphaericaexon
TCONS_00052410-exon-scaffold_213-1575043694:342665..342892TCONS_00052410-exon-scaffold_213-1575043694:342665..342892Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:342665..342892 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.18106	0	0	1.20801	0	0	0	0	1.83793	2.27658	0	1.45257	4.35165	3.01282	2.47695	2.65815	9.0052	2.51728	2.31851	0	2.10877	1.54287	5.00151	2.27355	2.3417	2.08991	0	0	0	1.23321
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052410 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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