TCONS_00052415 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052415
Unique NameTCONS_00052415
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length734

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052415 ID=TCONS_00052415|Name=TCONS_00052415|organism=Clytia hemisphaerica|type=transcript|length=734bp
AAGAATTTACTTTAAACGCTGTCAGACTCCACTTATTTGAAGATGCTAGA
GTCTGGGTCAACGTTGGCGTTGGTGACAGTAATTTAGATGCTAAACTGAA
GGATTTGACAGACTTTCGAGATAAAGTGCAACACGTTAATTACCAGGCTA
TTGACTTGTCAAAAGTTCAATACGAAATCTACTACATTGAGCGATTATTC
TACAACATGCCGCGCATCTTTGTTGTGCTGGTGATCGACAACAAACCAGG
AGAGCCTTCTCATTTCTCTTTCGTTCGTCCAGATGGTGTATACTTTGAGG
AGCTCAAGAAACATCGTGATGTTTCAACACTTAACACTAACGAACATTAC
GACCCTCAAGTACCGATCAAAGATTATCCTATTAAAGGGAATACAACTAT
GCAGAAAANACACTAACGAACATTACGACCCTCAAGTACCGATCAAAGAT
TATCCTATTGAAGGGAATACAACTATGCAGAAAACAATCGGTGTCTCAGC
ATACGGTGTCCATAGTCCCCATCGTAGAGCATTTAACATGAGCGGTGGAG
GGTGTCCAGAGAAAGGTGGCGACTTTGGTAGGTACCCATGGGGCAACCCT
GGTAGTGGCTGGCCCACTACTTATGAAGAAGTGACTCCGACCTGTGATGC
TTTCATGATCGATGTCAAGTTCTGGGCAAACCTTGATCAACCCTGGGATA
CTCTGGACGTTTTCCTTGGTAATGGTGGTTTCAA
Run BLAST on NCBI

protein sequence of TCONS_00052415-protein

>TCONS_00052415-protein ID=TCONS_00052415-protein|Name=TCONS_00052415-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
MVYTLRSSRNIVMFQHLTLTNITTLKYRSKIILLKGIQLCRKXTNEHYDP
QVPIKDYPIEGNTTMQKTIGVSAYGVHSPHRRAFNMSGGGCPEKGGDFGR
YPWGNPGSGWPTTYEEVTPTCDAFMIDVKFWANLDQPWDTLDVFLGNGGF
Run BLAST on NCBI

transcript from alignment at scaffold_213:473723..474456

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052415 ID=TCONS_00052415|Name=TCONS_00052415|organism=Clytia hemisphaerica|type=transcript|length=734bp|location=Sequence derived from alignment at scaffold_213:473723..474456 (Clytia hemisphaerica)
TTGAAACCACCATTACCAAGGAAAACGTCCAGAGTATCCCAGGGTTGATC
AAGGTTTGCCCAGAACTTGACATCGATCATGAAAGCATCACAGGTCGGAG
TCACTTCTTCATAAGTAGTGGGCCAGCCACTACCAGGGTTGCCCCATGGG
TACCTACCAAAGTCGCCACCTTTCTCTGGACACCCTCCACCGCTCATGTT
AAATGCTCTACGATGGGGACTATGGACACCGTATGCTGAGACACCGATTG
TTTTCTGCATAGTTGTATTCCCTTCAATAGGATAATCTTTGATCGGTACT
TGAGGGTCGTAATGTTCGTTAGTGTNTTTTCTGCATAGTTGTATTCCCTT
TAATAGGATAATCTTTGATCGGTACTTGAGGGTCGTAATGTTCGTTAGTG
TTAAGTGTTGAAACATCACGATGTTTCTTGAGCTCCTCAAAGTATACACC
ATCTGGACGAACGAAAGAGAAATGAGAAGGCTCTCCTGGTTTGTTGTCGA
TCACCAGCACAACAAAGATGCGCGGCATGTTGTAGAATAATCGCTCAATG
TAGTAGATTTCGTATTGAACTTTTGACAAGTCAATAGCCTGGTAATTAAC
GTGTTGCACTTTATCTCGAAAGTCTGTCAAATCCTTCAGTTTAGCATCTA
AATTACTGTCACCAACGCCAACGTTGACCCAGACTCTAGCATCTTCAAAT
AAGTGGAGTCTGACAGCGTTTAAAGTAAATTCTT

Coding sequence (CDS) from alignment at scaffold_213:473723..474456

>TCONS_00052415 ID=TCONS_00052415|Name=TCONS_00052415|organism=Clytia hemisphaerica|type=CDS|length=450bp|location=Sequence derived from alignment at scaffold_213:473723..474456 (Clytia hemisphaerica)
GAAACCACCATTACCAAGGAAAACGTCCAGAGTATCCCAGGGTTGATCAA
GGTTTGCCCAGAACTTGACATCGATCATGAAAGCATCACAGGTCGGAGTC
ACTTCTTCATAAGTAGTGGGCCAGCCACTACCAGGGTTGCCCCATGGGTA
CCTACCAAAGTCGCCACCTTTCTCTGGACACCCTCCACCGCTCATGTTAA
ATGCTCTACGATGGGGACTATGGACACCGTATGCTGAGACACCGATTGTT
TTCTGCATAGTTGTATTCCCTTCAATAGGATAATCTTTGATCGGTACTTG
AGGGTCGTAATGTTCGTTAGTGTNTTTTCTGCATAGTTGTATTCCCTTTA
ATAGGATAATCTTTGATCGGTACTTGAGGGTCGTAATGTTCGTTAGTGTT
AAGTGTTGAAACATCACGATGTTTCTTGAGCTCCTCAAAGTATACACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033140XLOC_033140Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052415-proteinTCONS_00052415-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052415-exon-scaffold_213-1491911889:473723..474456TCONS_00052415-exon-scaffold_213-1491911889:473723..474456Clytia hemisphaericaexon
TCONS_00052415-exon-scaffold_213-1510915933:473723..474456TCONS_00052415-exon-scaffold_213-1510915933:473723..474456Clytia hemisphaericaexon
TCONS_00052415-exon-scaffold_213-1575043694:473723..474456TCONS_00052415-exon-scaffold_213-1575043694:473723..474456Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_213supercontigscaffold_213:473723..474456 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.190668	0	0	0.0813364	0.064124	0	0.410785	0	0.988748	1.16685	0	0	0	0.0555745	0	0	0	0.0956072	0	0	0.507878	0.467574	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052415 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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