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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052428 ID=TCONS_00052428|Name=TCONS_00052428|organism=Clytia hemisphaerica|type=transcript|length=1208bp
ATTCGTAAAGTAGAAACATAaaggatttttttctccaaactgAACTAGAA
TAACGATTTACATTAAGATATACGTGTAAATATAtaaatgttttgtataa
gaataaACGATATAAAAATACTTATGATGAAATTAgcccaaaaaatgaag
aataatgtaaGAATACCACCACCATGAAATatggcaactgaacctaagaa
tgctattTTTAGAGAATTTTACCATTGAATTTGCAATTATTACCCAGCAA
TGCTAAAATGAtcaacaaaaatgccaaatttttgcTTGAGGTATATGCTA
GATTTTGGCAGGGATTGAATTCAAACTTCAAACCTAAGAAAAGATTTTCC
CCAAGATGGTTataaatattcatgatgaattgaaaaaacaggGTGTAAAT
TGAAATATTATCCTGATTAAATTCCCTACTTATTATTGTATAATACGATT
AAGTAAAGGTGATTTCTTAATCTtaactaaaataatttttaattgaatat
attttacacaATCTCCTATTATAAAAAGGTAGAGGGAAGTAGTAGTAGGG
ACAATGTTTTAGCGACCTTTAATGTCAGCTCATTAGTTTATTGCGCAAAA
TATTGCTGGAGAAACCAGTCGTTTGAGGCTGAAACTCGTGTGCATCAATA
TGTTATGCGTGTGTATAAAATGTTCATCATTTATTTGAGACAAACTGCAA
GAGCGCTTACAAGGAAAGAGAAGATTGTACCAATCCATCCAAAAATAAAT
GACCATCCATAACTAGCACTGTCCAAAAACTCAACCAATTTTCTTGAATC
GTCGGTGTAGATTGAAACAGCAATCAACATACAAATACCAGCGCCCAAAA
AGAGGGCGGAAACAGACTTGCCATCCATATCTTTAAATAGACGGACGAGT
GAAACCAGGGCGCCAAAACCGGCGAAAAGAACGGAAAGGACTGCGAAAGC
ACGGATTGCGTGCAGTTTTGTTGAAATATCATCCCAATCTCGGGTAACAC
AAACGTCGAGAACTTTTACACAATACCTCCATAAACCATTGCGGACCGTA
GCATTTATAAACCAATCATCACCGCCTGCAGAAGCCCCCAACAAAACGAA
AGTGCCAGCTGCGAATACCAAAAGAATGAGCGTCTTGCATTCCATCttaa
tgaaaaaagtttgatttctcctCTACACGTCTTTCGTTTTCTTGCTTGTA
AACGTCGT Run BLAST on NCBI protein sequence of TCONS_00052428-protein >TCONS_00052428-protein ID=TCONS_00052428-protein|Name=TCONS_00052428-protein|organism=Clytia hemisphaerica|type=polypeptide|length=154bp
MECKTLILLVFAAGTFVLLGASAGGDDWFINATVRNGLWRYCVKVLDVCV
TRDWDDISTKLHAIRAFAVLSVLFAGFGALVSLVRLFKDMDGKSVSALFL
GAGICMLIAVSIYTDDSRKLVEFLDSASYGWSFIFGWIGTIFSFLVSALA
VCLK Run BLAST on NCBI transcript from alignment at scaffold_213:782310..783517 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052428 ID=TCONS_00052428|Name=TCONS_00052428|organism=Clytia hemisphaerica|type=transcript|length=1208bp|location=Sequence derived from alignment at scaffold_213:782310..783517 (Clytia hemisphaerica)
ACGACGTTTACAAGCAAGAAAACGAAAGACGTGTAGaggagaaatcaaac
ttttttcattaaGATGGAATGCAAGACGCTCATTCTTTTGGTATTCGCAG
CTGGCACTTTCGTTTTGTTGGGGGCTTCTGCAGGCGGTGATGATTGGTTT
ATAAATGCTACGGTCCGCAATGGTTTATGGAGGTATTGTGTAAAAGTTCT
CGACGTTTGTGTTACCCGAGATTGGGATGATATTTCAACAAAACTGCACG
CAATCCGTGCTTTCGCAGTCCTTTCCGTTCTTTTCGCCGGTTTTGGCGCC
CTGGTTTCACTCGTCCGTCTATTTAAAGATATGGATGGCAAGTCTGTTTC
CGCCCTCTTTTTGGGCGCTGGTATTTGTATGTTGATTGCTGTTTCAATCT
ACACCGACGATTCAAGAAAATTGGTTGAGTTTTTGGACAGTGCTAGTTAT
GGATGGTCATTTATTTTTGGATGGATTGGTACAATCTTCTCTTTCCTTGT
AAGCGCTCTTGCAGTTTGTCTCAAATAAATGATGAACATTTTATACACAC
GCATAACATATTGATGCACACGAGTTTCAGCCTCAAACGACTGGTTTCTC
CAGCAATATTTTGCGCAATAAACTAATGAGCTGACATTAAAGGTCGCTAA
AACATTGTCCCTACTACTACTTCCCTCTACCTTTTTATAATAGGAGATtg
tgtaaaatatattcaattaaaaattattttagttaAGATTAAGAAATCAC
CTTTACTTAATCGTATTATACAATAATAAGTAGGGAATTTAATCAGGATA
ATATTTCAATTTACACcctgttttttcaattcatcatgaatatttatAAC
CATCTTGGGGAAAATCTTTTCTTAGGTTTGAAGTTTGAATTCAATCCCTG
CCAAAATCTAGCATATACCTCAAgcaaaaatttggcatttttgttgaTCA
TTTTAGCATTGCTGGGTAATAATTGCAAATTCAATGGTAAAATTCTCTAA
AaatagcattcttaggttcagttgccatATTTCATGGTGGTGGTATTCtt
acattattcttcattttttgggcTAATTTCATCATAAGTATTTTTATATC
GTttattcttatacaaaacatttaTATATTTACACGTATATCTTAATGTA
AATCGTTATTCTAGTTcagtttggagaaaaaaatccttTATGTTTCTACT
TTACGAAT Coding sequence (CDS) from alignment at scaffold_213:782310..783517 >TCONS_00052428 ID=TCONS_00052428|Name=TCONS_00052428|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at scaffold_213:782310..783517 (Clytia hemisphaerica)
ATGGAATGCAAGACGCTCATTCTTTTGGTATTCGCAGCTGGCACTTTCGT
TTTGTTGGGGGCTTCTGCAGGCGGTGATGATTGGTTTATAAATGCTACGG
TCCGCAATGGTTTATGGAGGTATTGTGTAAAAGTTCTCGACGTTTGTGTT
ACCCGAGATTGGGATGATATTTCAACAAAACTGCACGCAATCCGTGCTTT
CGCAGTCCTTTCCGTTCTTTTCGCCGGTTTTGGCGCCCTGGTTTCACTCG
TCCGTCTATTTAAAGATATGGATGGCAAGTCTGTTTCCGCCCTCTTTTTG
GGCGCTGGTATTTGTATGTTGATTGCTGTTTCAATCTACACCGACGATTC
AAGAAAATTGGTTGAGTTTTTGGACAGTGCTAGTTATGGATGGTCATTTA
TTTTTGGATGGATTGGTACAATCTTCTCTTTCCTTGTAAGCGCTCTTGCA
GTTTGTCTCAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052428-exon-scaffold_213-1491911889:782310..783517 | TCONS_00052428-exon-scaffold_213-1491911889:782310..783517 | Clytia hemisphaerica | exon |
| TCONS_00052428-exon-scaffold_213-1510915933:782310..783517 | TCONS_00052428-exon-scaffold_213-1510915933:782310..783517 | Clytia hemisphaerica | exon |
| TCONS_00052428-exon-scaffold_213-1575043694:782310..783517 | TCONS_00052428-exon-scaffold_213-1575043694:782310..783517 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:782310..783517 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004031 | PMP22/EMP/MP20/Claudin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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