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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052440 ID=TCONS_00052440|Name=TCONS_00052440|organism=Clytia hemisphaerica|type=transcript|length=1099bp
CTGTGCAATTGTCGGTGAATACACTTCTCTGTCTGAACTAACGGTTGCAG
GACGCCGGAGTCAGAGGCAGAGTTTGTACGGGCAAGTCATGAACAATGGA
ATCCCTCCGAGGATTGACATTGGGTGTCGATGGGGTGTCCTCTGGAGTGG
ATCGAGGTGTTTCCATTGGGCCATCAAGTTTTGCTGGTTGGATGTATTTG
AAGTCATGAATTGGACGGCGGTGTGCAGTCTTCTGGACAGCTGGGACGAA
TTTGCGTAAGAACCGTCGATTGCGATTTGTTGGCAGACCAGAGCCATCCA
TTCGAACTGTGTATTTGTCAAATTGATGAACTTCAACAATTTTGCCTGTT
TTGTCCCATTTGTGTGGGTGGGGTCCACGTTGGTTCTGGACCCTAACATG
GTCACCAATTTTAAGTGGCGGGAGTTGTTTGGTGTGTTCGGACCATCGTC
CAGAAGCAATCATATGGCAATGACGTAAGGCGTCTTCTCGTTTGTTCAAA
GTGTCCACCCATGTGGGGTGGGGTCTGTAGCGTCCAGGTTGAATTGGGAT
GAAATCTTTGACAGGTTTTCCGAAGATGCACATCGCAGGTGAGAGACCGG
ATTGCACCAACTTCACCAATCATGGGGAAATCGTTTGATATGATCCCAAT
TTTGACACACGCTTGCTTGCTGAGGAAGAATCTGTTGGTTACTTCAGTTG
CGTAAACCACTTGTCTTGTCTCTTTGGTGTCACCGTTGGCTGAACGTCCC
TTGATGAGGAGGATGGCAGCTCCAAGGATTGGCATAGAATTGTTGTTGGC
TGCCTTGATTTTCATTGTTGCTGGTATCAGGTCTTCTTCTCCAATGCCAA
GTCTTTGCAGGTGTTTGATGCTAATGACACAACTCTGGCATCCTGTATCA
GCCATTGCTTCAAATGTTGATGTTGTGTGCTTTTTCTCATCAAGGTGGTA
CCCAAGCCTTGAGTAATCTTCAGCTACCACCGAGACAGAGAGCTTGATGT
ATGGCTGGGGCTGGGAATCTCTCTTGATCCATCTATCTGTGTATAAGTGA
TGGTCGAGAGCAGTGGATGATGAAAGAGCGTTGTTTGTGTTGGAGGTTG Run BLAST on NCBI protein sequence of TCONS_00052440-protein >TCONS_00052440-protein ID=TCONS_00052440-protein|Name=TCONS_00052440-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
TSNTNNALSSSTALDHHLYTDRWIKRDSQPQPYIKLSVSVVAEDYSRLGY
HLDEKKHTTSTFEAMADTGCQSCVISIKHLQRLGIGEEDLIPATMKIKAA
NNNSMPILGAAILLIKGRSANGDTKETRQVVYATEVTNRFFLSKQACVKI
GIISNDFPMIGEVGAIRSLTCDVHLRKTCQRFHPNSTWTLQTPPHMGGHF
EQTRRRLTSLPYDCFWTMVRTHQTTPAT Run BLAST on NCBI transcript from alignment at scaffold_213:1353279..1354377 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052440 ID=TCONS_00052440|Name=TCONS_00052440|organism=Clytia hemisphaerica|type=transcript|length=1099bp|location=Sequence derived from alignment at scaffold_213:1353279..1354377 (Clytia hemisphaerica)
CAACCTCCAACACAAACAACGCTCTTTCATCATCCACTGCTCTCGACCAT
CACTTATACACAGATAGATGGATCAAGAGAGATTCCCAGCCCCAGCCATA
CATCAAGCTCTCTGTCTCGGTGGTAGCTGAAGATTACTCAAGGCTTGGGT
ACCACCTTGATGAGAAAAAGCACACAACATCAACATTTGAAGCAATGGCT
GATACAGGATGCCAGAGTTGTGTCATTAGCATCAAACACCTGCAAAGACT
TGGCATTGGAGAAGAAGACCTGATACCAGCAACAATGAAAATCAAGGCAG
CCAACAACAATTCTATGCCAATCCTTGGAGCTGCCATCCTCCTCATCAAG
GGACGTTCAGCCAACGGTGACACCAAAGAGACAAGACAAGTGGTTTACGC
AACTGAAGTAACCAACAGATTCTTCCTCAGCAAGCAAGCGTGTGTCAAAA
TTGGGATCATATCAAACGATTTCCCCATGATTGGTGAAGTTGGTGCAATC
CGGTCTCTCACCTGCGATGTGCATCTTCGGAAAACCTGTCAAAGATTTCA
TCCCAATTCAACCTGGACGCTACAGACCCCACCCCACATGGGTGGACACT
TTGAACAAACGAGAAGACGCCTTACGTCATTGCCATATGATTGCTTCTGG
ACGATGGTCCGAACACACCAAACAACTCCCGCCACTTAAAATTGGTGACC
ATGTTAGGGTCCAGAACCAACGTGGACCCCACCCACACAAATGGGACAAA
ACAGGCAAAATTGTTGAAGTTCATCAATTTGACAAATACACAGTTCGAAT
GGATGGCTCTGGTCTGCCAACAAATCGCAATCGACGGTTCTTACGCAAAT
TCGTCCCAGCTGTCCAGAAGACTGCACACCGCCGTCCAATTCATGACTTC
AAATACATCCAACCAGCAAAACTTGATGGCCCAATGGAAACACCTCGATC
CACTCCAGAGGACACCCCATCGACACCCAATGTCAATCCTCGGAGGGATT
CCATTGTTCATGACTTGCCCGTACAAACTCTGCCTCTGACTCCGGCGTCC
TGCAACCGTTAGTTCAGACAGAGAAGTGTATTCACCGACAATTGCACAG Coding sequence (CDS) from alignment at scaffold_213:1353279..1354377 >TCONS_00052440 ID=TCONS_00052440|Name=TCONS_00052440|organism=Clytia hemisphaerica|type=CDS|length=687bp|location=Sequence derived from alignment at scaffold_213:1353279..1354377 (Clytia hemisphaerica)
ACCTCCAACACAAACAACGCTCTTTCATCATCCACTGCTCTCGACCATCA
CTTATACACAGATAGATGGATCAAGAGAGATTCCCAGCCCCAGCCATACA
TCAAGCTCTCTGTCTCGGTGGTAGCTGAAGATTACTCAAGGCTTGGGTAC
CACCTTGATGAGAAAAAGCACACAACATCAACATTTGAAGCAATGGCTGA
TACAGGATGCCAGAGTTGTGTCATTAGCATCAAACACCTGCAAAGACTTG
GCATTGGAGAAGAAGACCTGATACCAGCAACAATGAAAATCAAGGCAGCC
AACAACAATTCTATGCCAATCCTTGGAGCTGCCATCCTCCTCATCAAGGG
ACGTTCAGCCAACGGTGACACCAAAGAGACAAGACAAGTGGTTTACGCAA
CTGAAGTAACCAACAGATTCTTCCTCAGCAAGCAAGCGTGTGTCAAAATT
GGGATCATATCAAACGATTTCCCCATGATTGGTGAAGTTGGTGCAATCCG
GTCTCTCACCTGCGATGTGCATCTTCGGAAAACCTGTCAAAGATTTCATC
CCAATTCAACCTGGACGCTACAGACCCCACCCCACATGGGTGGACACTTT
GAACAAACGAGAAGACGCCTTACGTCATTGCCATATGATTGCTTCTGGAC
GATGGTCCGAACACACCAAACAACTCCCGCCACTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052440-exon-scaffold_213-1491911889:1353279..1354377 | TCONS_00052440-exon-scaffold_213-1491911889:1353279..1354377 | Clytia hemisphaerica | exon |
| TCONS_00052440-exon-scaffold_213-1510915933:1353279..1354377 | TCONS_00052440-exon-scaffold_213-1510915933:1353279..1354377 | Clytia hemisphaerica | exon |
| TCONS_00052440-exon-scaffold_213-1575043694:1353279..1354377 | TCONS_00052440-exon-scaffold_213-1575043694:1353279..1354377 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_213 | supercontig | scaffold_213:1353279..1354377 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021109 | Peptidase_aspartic_dom |
Blast
The following BLAST results are available for this feature:
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