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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052441 ID=TCONS_00052441|Name=TCONS_00052441|organism=Clytia hemisphaerica|type=transcript|length=1069bp
TGCATTCACAACTGAAGAAGCTTCCATTATCTACATTGTTCAATgttgga
aaattgaaaatcaaacgAAAATGAAGCAACCAATTAAAAATGTAACATCA
ACTAAAATAAACCAAAATGCTTGGATACAGTGTGAAGTGGATATGAAAAC
AGGATATAAATATGAATTCGTTTTCAATACAGACAAAGCTGAGGACTCAA
AAATCATTGTCCAACTTCCATGCAATCATCATCATACAAGTAGGAAAGGA
GAAACATTAGTCTACGCTCATAATTGTGGAAGGCCTTCCAATATACACGC
ATTCGAAGTTTCGGACGAGAATGGAATCACAGATGTCGATACGTGTATCC
CAATAAGCACCGGTCCTTCAGTTGCCAAAACTGTCAAAGAATTCAATCAA
AGAGCAATGCAGTATTACAAAGACCATATCAACGTCAAAACCTTCCCACC
CTCGTATTACGTACGAAATGTAAACATTAAAGAAGTTGTTGCGAGTCTTG
AAAACCATTCATCACTTCTTGGAGGAAAAATTCTCGTCGGATATAACCCC
ATAAGCCATCTCAGAATACTTGGACTCAATGATCAAAAGATCAAAAGAAG
TGTTCTGTGTTTTTCTGAAAACCCTGATCATTACGACAACACAATTGTTT
GTATTTGTCCCAATCATAGCTTACTGTTTGTTTATGTGGTCGGTGAAAAC
GAAAAGCATCTTGACAAGGATTTGGCAAAAGTTAATGCTGTCTTGAAAAC
ATGGTGTTATGTTCACAGGCAGATTCTCCTAAATGAACAGTTTACCATTG
TTGGAATTCTCGTCTTACCGGCTTCAAGTGACTTGAAAAACATGAAGCAA
CATCCTTGCTTGAATCTAAACGCAAAGAGTCAGGACTTTGTCATTTCTTT
CGATGAAAACTTTGGACAATGGTTGACCAGCTTCTTAAAATTAATCCGAG
ATAATCGAAAGCTTTCATCACCTTCAACGCCAGGAATAATGGAAATCATT
GCAGGGAACATGATGGCAAGCATGGCACAAACCAAAATCTACCTTCCTCG
TGTTTCAGGAAATGACACT Run BLAST on NCBI protein sequence of TCONS_00052441-protein >TCONS_00052441-protein ID=TCONS_00052441-protein|Name=TCONS_00052441-protein|organism=Clytia hemisphaerica|type=polypeptide|length=356bp
AFTTEEASIIYIVQCWKIENQTKMKQPIKNVTSTKINQNAWIQCEVDMKT
GYKYEFVFNTDKAEDSKIIVQLPCNHHHTSRKGETLVYAHNCGRPSNIHA
FEVSDENGITDVDTCIPISTGPSVAKTVKEFNQRAMQYYKDHINVKTFPP
SYYVRNVNIKEVVASLENHSSLLGGKILVGYNPISHLRILGLNDQKIKRS
VLCFSENPDHYDNTIVCICPNHSLLFVYVVGENEKHLDKDLAKVNAVLKT
WCYVHRQILLNEQFTIVGILVLPASSDLKNMKQHPCLNLNAKSQDFVISF
DENFGQWLTSFLKLIRDNRKLSSPSTPGIMEIIAGNMMASMAQTKIYLPR
VSGNDT Run BLAST on NCBI transcript from alignment at scaffold_214:33210..34429+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052441 ID=TCONS_00052441|Name=TCONS_00052441|organism=Clytia hemisphaerica|type=transcript|length=1220bp|location=Sequence derived from alignment at scaffold_214:33210..34429+ (Clytia hemisphaerica)
TGCATTCACAACTGAAGAAGCTTCCATTATCTACATTGTTCAATgttgga
aaattgaaaatcaaacgAAAATGAAGCAACCAATTAAAAATGTAACATCA
ACTAAAATAAACCAAAATGCTTGGATACAGTGTGAAGTGGATATGAAAAC
AGGATATAAATATGAATTCGTTTTCAATACAGACAAAGCTGAGGACTCAA
AAATCATTGTCCAACTTCCATGTAAGATTGTCTAGAAAATTTGACTAGGA
AAATAGGGAAAATGCTTTTGAAGATTTGAGGTCACACTTCTGGATTTGTC
AtgctataaattttgaaatttttaagggATCTGAACTTATTAGGAATtca
aaaaagtcttatttcttTCCAGGCAATCATCATCATACAAGTAGGAAAGG
AGAAACATTAGTCTACGCTCATAATTGTGGAAGGCCTTCCAATATACACG
CATTCGAAGTTTCGGACGAGAATGGAATCACAGATGTCGATACGTGTATC
CCAATAAGCACCGGTCCTTCAGTTGCCAAAACTGTCAAAGAATTCAATCA
AAGAGCAATGCAGTATTACAAAGACCATATCAACGTCAAAACCTTCCCAC
CCTCGTATTACGTACGAAATGTAAACATTAAAGAAGTTGTTGCGAGTCTT
GAAAACCATTCATCACTTCTTGGAGGAAAAATTCTCGTCGGATATAACCC
CATAAGCCATCTCAGAATACTTGGACTCAATGATCAAAAGATCAAAAGAA
GTGTTCTGTGTTTTTCTGAAAACCCTGATCATTACGACAACACAATTGTT
TGTATTTGTCCCAATCATAGCTTACTGTTTGTTTATGTGGTCGGTGAAAA
CGAAAAGCATCTTGACAAGGATTTGGCAAAAGTTAATGCTGTCTTGAAAA
CATGGTGTTATGTTCACAGGCAGATTCTCCTAAATGAACAGTTTACCATT
GTTGGAATTCTCGTCTTACCGGCTTCAAGTGACTTGAAAAACATGAAGCA
ACATCCTTGCTTGAATCTAAACGCAAAGAGTCAGGACTTTGTCATTTCTT
TCGATGAAAACTTTGGACAATGGTTGACCAGCTTCTTAAAATTAATCCGA
GATAATCGAAAGCTTTCATCACCTTCAACGCCAGGAATAATGGAAATCAT
TGCAGGGAACATGATGGCAAGCATGGCACAAACCAAAATCTACCTTCCTC
GTGTTTCAGGAAATGACACT Coding sequence (CDS) from alignment at scaffold_214:33210..34429+ >TCONS_00052441 ID=TCONS_00052441|Name=TCONS_00052441|organism=Clytia hemisphaerica|type=CDS|length=2136bp|location=Sequence derived from alignment at scaffold_214:33210..34429+ (Clytia hemisphaerica)
GCATTCACAACTGAAGAAGCTTCCATTATCTACATTGTTCAATgttggaa
aattgaaaatcaaacgAAAATGAAGCAACCAATTAAAAATGTAACATCAA
CTAAAATAAACCAAAATGCTTGGATACAGTGTGAAGTGGATATGAAAACA
GGATATAAATATGAATTCGTTTTCAATACAGACAAAGCTGAGGACTCAAA
AATCATTGTCCAACTTCCATGCAATCATCATCATACAAGTAGGAAAGGAG
AAACATTAGTCTACGCTCATAATTGTGGAAGGCCTTCCAATATACACGCA
TTCGAAGTTTCGGACGAGAATGGAATCACAGATGTCGATACGTGTATCCC
AATAAGCACCGGTCCTTCAGTTGCCAAAACTGTCAAAGAATTCAATCAAA
GAGCAATGCAGTATTACAAAGACCATATCAACGTCAAAACCTTCCCACCC
TCGTATTACGTACGAAATGTAAACATTAAAGAAGTTGTTGCGAGTCTTGA
AAACCATTCATCACTTCTTGGAGGAAAAATTCTCGTCGGATATAACCCCA
TAAGCCATCTCAGAATACTTGGACTCAATGATCAAAAGATCAAAAGAAGT
GTTCTGTGTTTTTCTGAAAACCCTGATCATTACGACAACACAATTGTTTG
TATTTGTCCCAATCATAGCTTACTGTTTGTTTATGTGGTCGGTGAAAACG
AAAAGCATCTTGACAAGGATTTGGCAAAAGTTAATGCTGTCTTGAAAACA
TGGTGTTATGTTCACAGGCAGATTCTCCTAAATGAACAGTTTACCATTGT
TGGAATTCTCGTCTTACCGGCTTCAAGTGACTTGAAAAACATGAAGCAAC
ATCCTTGCTTGAATCTAAACGCAAAGAGTCAGGACTTTGTCATTTCTTTC
GATGAAAACTTTGGACAATGGTTGACCAGCTTCTTAAAATTAATCCGAGA
TAATCGAAAGCTTTCATCACCTTCAACGCCAGGAATAATGGAAATCATTG
CAGGGAACATGATGGCAAGCATGGCACAAACCAAAATCTACCTTCCTCGT
GTTTCAGGAAATGACACTGCATTCACAACTGAAGAAGCTTCCATTATCTA
CATTGTTCAATgttggaaaattgaaaatcaaacgAAAATGAAGCAACCAA
TTAAAAATGTAACATCAACTAAAATAAACCAAAATGCTTGGATACAGTGT
GAAGTGGATATGAAAACAGGATATAAATATGAATTCGTTTTCAATACAGA
CAAAGCTGAGGACTCAAAAATCATTGTCCAACTTCCATGCAATCATCATC
ATACAAGTAGGAAAGGAGAAACATTAGTCTACGCTCATAATTGTGGAAGG
CCTTCCAATATACACGCATTCGAAGTTTCGGACGAGAATGGAATCACAGA
TGTCGATACGTGTATCCCAATAAGCACCGGTCCTTCAGTTGCCAAAACTG
TCAAAGAATTCAATCAAAGAGCAATGCAGTATTACAAAGACCATATCAAC
GTCAAAACCTTCCCACCCTCGTATTACGTACGAAATGTAAACATTAAAGA
AGTTGTTGCGAGTCTTGAAAACCATTCATCACTTCTTGGAGGAAAAATTC
TCGTCGGATATAACCCCATAAGCCATCTCAGAATACTTGGACTCAATGAT
CAAAAGATCAAAAGAAGTGTTCTGTGTTTTTCTGAAAACCCTGATCATTA
CGACAACACAATTGTTTGTATTTGTCCCAATCATAGCTTACTGTTTGTTT
ATGTGGTCGGTGAAAACGAAAAGCATCTTGACAAGGATTTGGCAAAAGTT
AATGCTGTCTTGAAAACATGGTGTTATGTTCACAGGCAGATTCTCCTAAA
TGAACAGTTTACCATTGTTGGAATTCTCGTCTTACCGGCTTCAAGTGACT
TGAAAAACATGAAGCAACATCCTTGCTTGAATCTAAACGCAAAGAGTCAG
GACTTTGTCATTTCTTTCGATGAAAACTTTGGACAATGGTTGACCAGCTT
CTTAAAATTAATCCGAGATAATCGAAAGCTTTCATCACCTTCAACGCCAG
GAATAATGGAAATCATTGCAGGGAACATGATGGCAAGCATGGCACAAACC
AAAATCTACCTTCCTCGTGTTTCAGGAAATGACACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052441-exon-scaffold_214-1491911889:33210..33430 | TCONS_00052441-exon-scaffold_214-1491911889:33210..33430 | Clytia hemisphaerica | exon |
| TCONS_00052441-exon-scaffold_214-1510915933:33210..33430 | TCONS_00052441-exon-scaffold_214-1510915933:33210..33430 | Clytia hemisphaerica | exon |
| TCONS_00052441-exon-scaffold_214-1575043694:33210..33430 | TCONS_00052441-exon-scaffold_214-1575043694:33210..33430 | Clytia hemisphaerica | exon |
| TCONS_00052441-exon-scaffold_214-1491911889:33582..34429 | TCONS_00052441-exon-scaffold_214-1491911889:33582..34429 | Clytia hemisphaerica | exon |
| TCONS_00052441-exon-scaffold_214-1510915933:33582..34429 | TCONS_00052441-exon-scaffold_214-1510915933:33582..34429 | Clytia hemisphaerica | exon |
| TCONS_00052441-exon-scaffold_214-1575043694:33582..34429 | TCONS_00052441-exon-scaffold_214-1575043694:33582..34429 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_214 | supercontig | scaffold_214:33210..34429 + |
Blast
The following BLAST results are available for this feature:
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