TCONS_00052445 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052445
Unique NameTCONS_00052445
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length916

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052445 ID=TCONS_00052445|Name=TCONS_00052445|organism=Clytia hemisphaerica|type=transcript|length=916bp
ATTTAgtgtaaaaaataattaaaatgtcAACATCAAAGACTCCAGATATA
GAGAAAGATGTTCAAAATGTGGATGATGCAAGATCGAAATTGGAAGATAT
TTTGaatgatatttttgataaaaatgaagatggACAAACTCCAGCTAATA
ATCTTGGTGATGATAAAGCAAAAAGagTGAATCCAACTTCATATACACCa
accaaaaaaaacttctctgGTCGTTATGCTAGaaagaacaagaaaaagaa
agacttatttcaaaatgAATCCtacaataaaaaacaaaaacgtaagtttc
caaatattttctttctttctttaattcaAGATTTCCTGACCTTTTTTATC
TTCCAATCTCGGAAAACCATTATGAAAGTAGTATTAGAGTCCCTTCCCCA
CTccttttttcctggaaaatgaGAACTAGAAATCTTTTTTAGGAAAGTCA
GGGGGTATTAAAGGTTTGAAAAGCATTATTTCTCAtttgaaatttatctt
ttttaaagTCTCGACTTTCCGTTCATGGACACTAGGTTAAAATTGGATAA
CCTGCAAAACAATTTGTCATTTTCCTTGTCCTTCCTTGTGGATTATCGGT
ACGAGTCTAAAATCAACATACCGAAATTCCAGTACTGTCAAGAAAATCCG
CTAAAGCAGGATTTTTAGTTCGGGATGTTAGAACATAGCTTTTATCACAG
GCTTGAATATATTTACAGGGAAtcattttttttcgggacacactgTAGAC
CATACCGAAAACCCAAAAGGATTCCATCTAGATAACTTGTgcttatgttt
ttttgtttttgatgattttttgtatctttgaattatttatatCATCAGAG
TGAGTTGtaccatttttttttcttttacaccTTATATACATCTCTACATA
CCGGTTTTCAGCAAGG
Run BLAST on NCBI

transcript from alignment at scaffold_214:67570..70102+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052445 ID=TCONS_00052445|Name=TCONS_00052445|organism=Clytia hemisphaerica|type=transcript|length=2533bp|location=Sequence derived from alignment at scaffold_214:67570..70102+ (Clytia hemisphaerica)
ATTTAgtgtaaaaaataattaaaatgtcAACATCAAAGACTCCAGATATA
GAGAAAGATGTTCAAAATGTGGATGATGCAAGATCGAAATTGGAAGATAT
TTTGaatgatatttttgataaaaatgaagatgggTAAGTAATGTTATTGT
ATTATAANTTTTTGTGAAAATATACCTGTTTTTTTACCTTTTAGGCCCTT
TTAACATTTCTTTGGCATACTCTTTCTTATTATAGAACCGCAGCAGAAAA
TTTAATTATACGCTTTCAACTTAAACTTGGAAAAGCACAATGAAAATAGT
GAGGTcaggtagcacataaaaacgtaagaatacttcagatggtgattaaa
gcatgaaatttggcacagatgatccttagagggtctaaaacttaaNtgat
aaaaatgaagatgggTAAGTAATGTTATTGTATTATAACTTACGATGTAC
TGGAGTAGAATCCTGTCATACTGTATAAAATCACTAAGGAAGAAAACAAT
TCTCATGTAAAGTTGTTGTCCaaaacttttaatatttttggtaTAACTTT
TTGGTATAACAATTTTCTGCTGCCAAACGGAATGAATACCCAATATTTAG
TATAACAGTAGAAGTTTCTAAGATTCGTTATTTGGTAATTATCTTTTTGT
GACCCTTACCCTAGGAGATTTTCAGACAGGAATTACAATATATAACTTCT
TATAACATGCTACTAAAACCATTCTTTCCCTTTCTCATTTCCAGACAAAC
TCCAGCTAATAATCTTGGTGATGATAAAGCAAAAAGGTAGGTACCTCTCT
TAGAGAGAGGTTTAAACCTTTTATAATCCTAATTGATAAATAATTTCAGA
TGTTATTTGATGGTATTATAGCTCACAgtatatttgaaatattgtttctt
ttctttagagTGAATCCAACTTCATATACACCaaccaaaaaaaacttctc
tgGTATAGCCTTTTTTGATCGCAGAAAATTTGTTCTACTTTAAAGCATag
accgttgaaaagataaactTAGAGcactataagaaaaaaaaatctaaaac
tttcAAGCAATGAagacgaaaaatgaaaaagtgaaattttttatcCCTTG
GTACTAGTACATCCATTTTTGGCACAGAGGTACAGGTATTTCAGACTTTA
GTTGACAAAGTTGATTAGAGACATCATATAAATGTTTTTCAATATAATAT
ACTGTAATTTATACAATGGTATTtacttaactcgaacaagtttccaagtc
ccttcagttaacaatgccttataaaccttactccataactcaaaatttcc
ttaaaatcttgaaaaatttattGTAATTTATGATTTTGTTACTTTAGGTC
GTTATGCTAGaaagaacaagaaaaagaaagacttatttcaaaatggtagg
TTGGGGTTAACCTATTGTATCAGCAAGACTAAGATATCTGCTTCTATCTC
TATTGAAGATTTTAAGAAATCTTTCACTTGCGAACGGACCGAAACATCAA
TGCACTCTTCCACACTTAATCTTAGACTTGCAGTCTATTTTACGGTCGAA
AGGCATCATGGGGACTCAGGACCACCTTGCTCTGATAACGGCAAGATAAC
GGCTAATTGTTGCTCTATAATTTCGGAGAAGCTTTTTCCGTCACACCAAC
AGGAAAGTAGTACTTGATGCAGTACCAAATAAATTGACCATTGCATTAGA
AAAAGTGATCGAGTAGTGGCACTTTTAGGATATACTTTCCTAAAAACTct
tatcaaattttgatttaaaccTGAAAACAGTGAAGGACTTTGAggtcaat
tttccaaaatggGTTTTTTCGATCGTCAAAAAGTAATACAGTTTCATTTT
CTTAgttaaaatcttcaattttctttattcACAGAATCCtacaataaaaa
acaaaaacgtaagtttccaaatattttctttctttctttaattcaAGATT
TCCTGACCTTTTTTATCTTCCAATCTCGGAAAACCATTATGAAAGTAGTA
TTAGAGTCCCTTCCCCACTccttttttcctggaaaatgaGAACTAGAAAT
CTTTTTTAGGAAAGTCAGGGGGTATTAAAGGTTTGAAAAGCATTATTTCT
CAtttgaaatttatcttttttaaagTCTCGACTTTCCGTTCATGGACACT
AGGTTAAAATTGGATAACCTGCAAAACAATTTGTCATTTTCCTTGTCCTT
CCTTGTGGATTATCGGTACGAGTCTAAAATCAACATACCGAAATTCCAGT
ACTGTCAAGAAAATCCGCTAAAGCAGGATTTTTAGTTCGGGATGTTAGAA
CATAGCTTTTATCACAGGCTTGAATATATTTACAGGGAAtcatttttttt
cgggacacactgTAGACCATACCGAAAACCCAAAAGGATTCCATCTAGAT
AACTTGTgcttatgtttttttgtttttgatgattttttgtatctttgaat
tatttatatCATCAGAGTGAGTTGtaccatttttttttcttttacaccTT
ATATACATCTCTACATACCGGTTTTCAGCAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033168XLOC_033168Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052445-exon-scaffold_214-1491911889:67570..67702TCONS_00052445-exon-scaffold_214-1491911889:67570..67702Clytia hemisphaericaexon
TCONS_00052445-exon-scaffold_214-1510915933:67570..67702TCONS_00052445-exon-scaffold_214-1510915933:67570..67702Clytia hemisphaericaexon
TCONS_00052445-exon-scaffold_214-1575043694:67570..67702TCONS_00052445-exon-scaffold_214-1575043694:67570..67702Clytia hemisphaericaexon
TCONS_00052445-exon-scaffold_214-1491911889:68314..68355TCONS_00052445-exon-scaffold_214-1491911889:68314..68355Clytia hemisphaericaexon
TCONS_00052445-exon-scaffold_214-1510915933:68314..68355TCONS_00052445-exon-scaffold_214-1510915933:68314..68355Clytia hemisphaericaexon
TCONS_00052445-exon-scaffold_214-1575043694:68314..68355TCONS_00052445-exon-scaffold_214-1575043694:68314..68355Clytia hemisphaericaexon
TCONS_00052445-exon-scaffold_214-1491911889:68478..68521TCONS_00052445-exon-scaffold_214-1491911889:68478..68521Clytia hemisphaericaexon
TCONS_00052445-exon-scaffold_214-1510915933:68478..68521TCONS_00052445-exon-scaffold_214-1510915933:68478..68521Clytia hemisphaericaexon
TCONS_00052445-exon-scaffold_214-1575043694:68478..68521TCONS_00052445-exon-scaffold_214-1575043694:68478..68521Clytia hemisphaericaexon
TCONS_00052445-exon-scaffold_214-1491911889:68917..68964TCONS_00052445-exon-scaffold_214-1491911889:68917..68964Clytia hemisphaericaexon
TCONS_00052445-exon-scaffold_214-1510915933:68917..68964TCONS_00052445-exon-scaffold_214-1510915933:68917..68964Clytia hemisphaericaexon
TCONS_00052445-exon-scaffold_214-1575043694:68917..68964TCONS_00052445-exon-scaffold_214-1575043694:68917..68964Clytia hemisphaericaexon
TCONS_00052445-exon-scaffold_214-1491911889:69454..70102TCONS_00052445-exon-scaffold_214-1491911889:69454..70102Clytia hemisphaericaexon
TCONS_00052445-exon-scaffold_214-1510915933:69454..70102TCONS_00052445-exon-scaffold_214-1510915933:69454..70102Clytia hemisphaericaexon
TCONS_00052445-exon-scaffold_214-1575043694:69454..70102TCONS_00052445-exon-scaffold_214-1575043694:69454..70102Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_214supercontigscaffold_214:67570..70102 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.825391	0.954078	1.23516	1.58783	0.358625	0.55743	0.583298	0.581588	0.644141	0.560885	0.313056	0.678868	0.623254	0.187769	1.17025	0.758366	0.449862	1.49479	0.145107	0.743954	1.25656	1.41507	0.791993	0.686719	0.559783	1.50208	0.86559	0	0.0775806	0.106037
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052445 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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