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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052451 ID=TCONS_00052451|Name=TCONS_00052451|organism=Clytia hemisphaerica|type=transcript|length=4532bpRun BLAST on NCBI protein sequence of TCONS_00052451-protein >TCONS_00052451-protein ID=TCONS_00052451-protein|Name=TCONS_00052451-protein|organism=Clytia hemisphaerica|type=polypeptide|length=521bp MHKGDTKPSNTASLQQNFEIKKTHSFLSIMSHKKANANSLPRQKTVHSGWRun BLAST on NCBI transcript from alignment at scaffold_214:133251..161124+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052451 ID=TCONS_00052451|Name=TCONS_00052451|organism=Clytia hemisphaerica|type=transcript|length=27874bp|location=Sequence derived from alignment at scaffold_214:133251..161124+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_214:133251..161124+ >TCONS_00052451 ID=TCONS_00052451|Name=TCONS_00052451|organism=Clytia hemisphaerica|type=CDS|length=21924bp|location=Sequence derived from alignment at scaffold_214:133251..161124+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052451 vs. Swiss-Prot (Human)
Match: RHG24 (Rho GTPase-activating protein 24 OS=Homo sapiens GN=ARHGAP24 PE=1 SV=2) HSP 1 Score: 249.595 bits (636), Expect = 6.423e-69 Identity = 129/323 (39.94%), Postives = 200/323 (61.92%), Query Frame = 3
Query: 348 RQKTVHSGWLWKKG-LMKSPLANRRWFEIKGDQLYYFKSKGDTTPLGQIPLAGNEVKRIQSSDTN-NKYSFQLVAGQERKGRPVTENFDTLLFAASTPYELDEWIRAINRVIYTYCFQPLGGGMFGRSIRETMNIESRRGAGMVPIIVELCVEYIKKHGLHEEGIFRIPGAQEEVDALKNKFNTGSLKELKDGEYKVHIVASVLKKYLGDLPQSVIPPDNYDQFIAVGGLFKEDSDEAMKKFSPVLKDIPKAHFDLLKYLCRFLYELKEYHNETKMTVENLALVFGPNILRPQNEDPAMLLQCLSEANTTTVALINNQANLFP 1310
RQ + GWL K+G +K+ + RWF +KGDQLYYFK + +T PLG I L GN+V ++ N K+ F++V G +R +T N ++ L AST ++++W+++I RVI+ P GGG+FG+ + +T+ E R G + P++VE CV++I++ GL EEG+FR+PG V L++ F+ G K D VH VAS+LK YL +LP+ VIP Y+ F++ L ++ + +K+ + +K +P +++LLKY+CRFL E++ Y KM+V+NLA VFGPNILRP+ EDP +++ +I+ LFP
Sbjct: 17 RQNAIKCGWLRKQGGFVKT--WHTRWFVLKGDQLYYFKDEDETKPLGTIFLPGNKVSEHPCNEENPGKFLFEVVPGGDRDR--MTANHESYLLMASTQNDMEDWVKSIRRVIWG----PFGGGIFGQKLEDTVRYEKRYGNRLAPMLVEQCVDFIRQRGLKEEGLFRLPGQANLVKELQDAFDCGE-KPSFDSNTDVHTVASLLKLYLRELPEPVIPYAKYEDFLSCAKLLSKEEEAGVKELAKQVKSLPVVNYNLLKYICRFLDEVQSYSGVNKMSVQNLATVFGPNILRPKVEDPLTIMEGTVVVQQLMSVMISKHDCLFP 330 The following BLAST results are available for this feature:
BLAST of TCONS_00052451 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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