TCONS_00052454 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052454
Unique NameTCONS_00052454
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3844

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052454 ID=TCONS_00052454|Name=TCONS_00052454|organism=Clytia hemisphaerica|type=transcript|length=3844bp
TTTTCAGCCCTTGGGAGGTGGAATGTTTGGTCGATCTATCAGGGAAACAA
TGAACATTGAATCACGACGAGGTGCTGGAATGGTTCCAATCATTGTGGAA
CTTTGTGTGGAATATATCAAAAAACATGGTCTCCATGAAGAAGGAATTTT
CCGTATACCAGGAGCACAAGAAGAAGTTGatgctttgaaaaataaattca
atacAGGATCACTGAAAGAGTTGAAAGACGGGGAATACAAAGTGCACATT
GTTGCATCAGTTCTCAAAAAATATCTTGGTGATTTACCACAGTCAGTTAT
TCCTCCAGATAATTACGATCAATTCATTGCTGTCGGTGGCTTGTTCAAAG
AAGATTCAGATGAGGCTATGAAGAAATTTTCTCCCGTTTTGAAAGACATA
CCAAAAGCTCACTTCGATTTACTCAAATATCTATgTCGCTTTTTATACGA
ATTGAAAGAATACCACAATGAAACGAAGATGACGGTCGAGAATTTGGCAC
TCGTTTTTGGACCAAACATCTTACGACCACAGAATGAAGATCCGGCTATG
TTACTGCAATGTTTATCAGAAGCCAACACGACCACAGTTGCATTAATCAA
TAATCAAGCCAATCTCTTCCCTGTCACCAATGACGAATGTTATTATGATC
CAAACAGAACTCTGCTAAATGATCACAGAATGAACGATTTGATTGACTTC
GATTCGGAGCAAAGAAGTGCGACTTTCGACTATCACAAATGCAAATCCAT
ACCTACTCTTGCAGTGAATGGTGAACTCAAACGTTCATTATCTGAAAGTA
GTTTACATGATATCGTTATTGAAAaTGAGCGAACAAAAAGTTTATCAGGT
AGTCCATCTTCAATGGAAGAGGCAGCAAGTTTACGTCAAGAAATGGTAGA
TATGAAATTGGATTACGAGGAGCAGATATCGGACCTAGAGAAGAGGCTGG
GTGAAGAGAAACAAGTTCAAAAACTTCTCAAAATTCGATTGGTTGATGAA
CAAAAAGCAAGGCAAGCTTTAGAAGAACGACTTGAATTATACAGGGCAGG
TATAGAAGAATACTGCAGGAAGTTTGGGCACGTTGATATATCTATCCgat
aaatgaacaaaaaaaatcttgaagaaAAAGGAGTGTTGTTGGAACAACTC
AACAGGCAGGATACTGGTTGAAGTTTCTTCAAGCGCCGGTTGCTTTTCCC
CGTTGATGTTatcattttgaaagtttgagtaTATTTCTCgatattcaaaa
aattgaacaggggaATAATTTTGTCATTGCTCTTGTTTTTGCATctaaag
ggaactaattttaacGAAAACTAAGTCGTAGAAAAAATAAAGTCAGTGGA
cagcatttttttttcttttgggcAAAAACTGAAATTGGTAAATGACAGGG
AATTTTTTTGTAGACTTAtgtaaagtttattttcttttttgtagaaaatt
tatagagtatttttttctaattgtaCATATCTATGAAATACTGTTTAATA
ATCGATAATTTTTATAATATTGAAAAATTCCTATATTTTTATGATATCAG
CATTTAACAAACTTTACTCTCATATTTTTCTATTAAGccctaaaattttc
aaagtcagAAGTCTTTTCGTTTTCATCCATAGTGCGACTGTGTTAAAAAC
TCGAGTTCTTACCGAGTGACACTACCAAGCATGTCAAGAAATCTTTCTTA
GACCAACGTAGCTTGATTCTGTTACTCCTCCCTGAAAATGTTAACTTCAT
CAGCAAAATATTGTGtactaagaaaatattttaatgataGCATGAGGTAA
ATTAATAATACATAATAATCAATATACATTTCTATTTGTACCAACCCAAA
TTTACCGTTTACGGCTCATGGCTGAAGTAGGGCTAAGGATTTTCAGGATT
TGAACCAAAGATCTTTATTGGTTTTAAGCCAGAATTGCTATACTAAGCAA
CATCCAAAATTTGGCCTTCCAACTCATTTATTGACTAAAATGCTTCAAAT
TAGGCCTCTGTTAAGCATTTAGAAGCCAGCTAAAACCAAAAATACCTGAT
TTTTAAGTGTTTATGATTGATTTCATAGCTAGTTTCAACGCTATGGTTTC
TAGTCAAGCTACTTATATAAGTTTTGGACATTTTCAGGGCTGGGTATTAG
CAATTAGGGAGGGGTATGACAGGTGGTGTGAATTAGGGCATAATAGGTAT
AGTTATAGTTCTATAGGTATAGTTCTTTATGACCTTTCTAAGTATGTTGT
TGAAAATGGGCCGAGGACCTCTCTTTTTCATCCTACCACTTCACACCATG
GCAGTGCAAGGTCTCCTGGCGGGACTTAGAAAGAATTTTAATACTTTTCA
TTgtaattattttcttcttcaatttggctttttagatgaaattattattt
ttgtatACAATAGATTTATAGCGGCACAGTAGGATAACTTTTTAATAGAG
AAAGATTATTAGTtcataaatgaaataaaattgtaTGTGCTTTCTTCAAA
CCAAAGAGAGTGTTTAGACCAGTCATGTTGTATTTAATTggcaaaaaatt
acaaaGAAACAATGACAGCAAAGAAGTTTCGGATTTTAATTGTACTCCCG
CTTATTATTCAGAATGTTATCCTTGAACAATGCAGTCAAATGTCATTTCA
AAGATTGGAtggaattcattttgaaattcttgatAGATACACAAATCTTC
CTATTGACCCTTTTGCTAACTTCCACGAAAATAGCATCGAAAATTGTCTC
ACTAGATGTTACCATACAAAAAACTGTATGTCTTTTCAAGTCCAAAGATT
CGATAGTTATCATTTCGGTTGTTCACTTTATTGGTTTGCTACTAAACGAT
CTGGTACAANGTAGTTATCATTTCGATTGTTCACTTTATTGGTTTGCTAC
TAAACGATCTGGTACCATATTTACTCGAAAGGAAAACAGTACAGCCTTCA
TATCAGCAATTAATTTAGAAAGGCTGATTGATTTTTCAATAGTATCATCA
tgcaagaataaaaaaaatgatttttatcttATGTCGTTGAAAAGTCAAAC
AGAAGAAAAATATCGCTACGCTCGTTGCAATGGTTTTGGTCGAGAAATCA
TTGGCCAACTAAAATATCCAAAAAGAGTATTTTCTCTTTCTTCAGTGAAT
GGAATTTTTACATCAGATTACTGGATCGGGTTAAATGAACTCTCAGATCG
AGTCCAAAATACTGACTTGCTAATCAGCTTCACTGTACCATATCCATTTG
TTGAGAGTGATCTAATAGCCATTTACAAGGACGTCACAGTAGGAAAGGAA
TCAGATTCGTGGGTTTTCCGTGGGACATTTGCATCAGCCACATCAACTGT
CGGAGACATGATAGATCAAGTTgcttttaacaaaaaacgtGGCTGGTGGA
TAAAAAATGACCAAGAAAAACCTAATAAAGATCAATTCGTTACTCAAGAT
GGGTGCTCTTTTGATCACGAGGGAAATTTAGGTGAAACACAGCTACCATT
TTATTGGAAACTTCAAAATGGCACATATTTTTGCGCAAAAACGGTCCAAA
TAAGAATCTAATATATcataaaatttaacttttatcaacaaattataaaa
aatatgattGCTTGTCACATAGAGAAAGTGTCTACTTCgcatcattttca
aaacaaagttaaaacgcatgcgtatTTATAAACTGTTAGTCGTTATTTTA
CGCAATATacgtacagtcactttcggtcgttCTTTTTAATGTTGCGAAGT
AGGCACCTTCTCCCCCACTTGTAGTCGATATTTGCACTTTACACTGCATC
ACAGTttgttgaagaaaaaaaacagtcCCGTTAATAACTAATTA
Run BLAST on NCBI

transcript from alignment at scaffold_214:145898..161124+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052454 ID=TCONS_00052454|Name=TCONS_00052454|organism=Clytia hemisphaerica|type=transcript|length=15227bp|location=Sequence derived from alignment at scaffold_214:145898..161124+ (Clytia hemisphaerica)
TTTTCAGCCCTTGGGAGGTGGAATGTTTGGTCGATCTATCAGGGAAACAA
TGAACATTGAATCACGACGAGGTGCTGGAATGGTTCCAATCATTGTGGAA
CTTTGTGTGGAATATATCAAAAAACATGGTTAGTCCATTAAAGATTCttg
aaaattcaacttttcACCTTCATTAGATATTATCAACCATTGAATTCAAA
GCCCAAAGCGCTAGACATGAAACTCCTGGATGGAAAAttaagccacttat
ttcccatcctaaACGCCGTGACCCGCGTGGGCCACAAACGTTAGATTAAA
AGTAAAATGTATCGCCAGATTTTGCAAAATATCCTGCCTAAAAACAAAGA
AGGGGTTGGATTCAATCCATCATTCTAAAGCGCTGCaataaggcttcact
ttttcttgctttagaAAGGTTGAAGACTCATCTCTAGCTCCTTCGGGNTG
GATTCAATCCATCATTCTAAAGCGCTGCaataaggcttcactttttcttg
ctttagaAAGGTTGAAGACTCATCTCTAGCTCCTTCGGGGCTTTGAACTC
AATGTTATCAATCTATCATCtcttttttggatgtttttgattaaatttct
aTTCAATTTCAGTTTTCCTTACTGACTTAATTCTTTATGTGTTCTTTgga
agagaatttttttaagattttaacatTTGACGTTTGTTTGTTTCCCCATT
GGGAATAATCGTCTCTTGGAAAGTTGCTGTAAATGTAAGAGGTATTGTGG
AAAAATTGTAGTAATTCATTCTCACTCTCTATGCAATTCTTTGGTCTCTT
ATAGGTCTCCATGAAGAAGGAATTTTCCGTATACCAGGAGCACAAGAAGA
AGTTGatgctttgaaaaataaattcaatacAGGTAGGTATCAAACAATAT
TAGACAATGTTTTCAGTAGAACCTGAAACTGTTacttaataatattttaa
tgCTAATTGATCTCcaattcttagaaaaatgtttaaaaaggcGAATCTTG
TTAATTAAGTGATGCCAAATTACAAAGCAGGTTAAAGCATCAATCATCAG
CTGAATGTGCTTGTACTGATGTACTTGTATTTAATTGGTTTCCTTTTTAT
CAGgctcatttaaaaaaaactgtgtTTTTTCATATGTGTAATATGGGGAG
ATTCtgacttttcctttttttagtatggaaaataaaattaacGTGATGTT
GAAGTAAGGATTCATAATTTCATGAATGCATGTTAAATTTCNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATA
TCATTGATTGATGTTGATGAGATGTTTCAATTTTACAACCAAACCACCTT
AGTCCCACCTTAAAAAATCAGGTCCCACCTAATCCTGTCCCCCccctgaa
atccaaaaaattggaagtcccacctaaagattTTGAACCCAAATCAACAA
AACCCCCCCTtaatttaggggggggggtgcacactatgaatGATCTTTgg
attaaagttttcttttttgtgaAGTAACATTGTTTGAACAAAACTTTTGT
TTAATACCTTTCAGCTGGTCAAGAGAGGAAAGGACGCCCAGTTACCGAAA
ACTTTGATACATTATTATTTGCGGCATCCACACCTTATGAATTAGAtgaa
tggattagagccatcaATAGGGTCATTTACACGGtaagatttttcttttc
tataTAACTGACGACAATTTTCATTAAAGAGAATGACTCACATATTTATT
AATGGTTTTGATATTCTATCCCTAACACTAAGTAAGATGCATGAATAGTA
ATTTTGGCAAAAGCTTGCTTTACACACTTCTTTCTTCCTGTGAATGATAA
ATGAGGCTTATCTCTGTGCCtgattcttttttatttgaggtTTTAAGTAG
TTGTCATTAAAAGTTGTGATTATGTTATAAAGGCATGATTATATTTTTAT
ACCtaatgatattttatttttcaatttaccAGATACAACCTGTTTTagac
aaaatacaaaaagacaTTTTAATAATGCCCAAAACTCGTTTTAATATTAA
TTTCTACTAATAACTGATTAATTAATGTCAATAAACTCATTGAACTACTT
ACTTCCTACTAACGAGGCGTATAAATGAATGCAGGATTGAATGCTTGTCA
AAATTCTCAAAAGTATGCAGGTTTGGATTGCATGACATTTCCTTGCACAA
CACACAGCAATACAATGCACATACAGCTTGAAAAACTGTttcacaaaaac
acaatttcattaATTATTTGTCTCTCACTTTAAGCTAGTAAGTTATAGAG
GACTCATTCGGTTCAACTAAAGTCTCCAACTTTTCTGGGATATTGCACAA
TATTGTACTGAATACTGATTTTTTTTTGTATTTTGCAAATTATTTCTTGC
ATTCATTCATATGATCAATTCCTTGTCAACTAATCTTCTTTTTTGTATTA
ATTGTTCTAGTATTGTTTTCAGCCCTTGGGAGGTGGAATGTTTGGTCGAT
CCATCAGGGAAACAATGAACATTGAATCACGACGAGGTGCTGGAATGGTT
CCAATCATTGTGGAACTTTGTGTGGAATATATCAAAAAACATGGTTAGTC
CATTAAAGATTCTTGAAAATTCAACTTTTCACCTTCATTAGATATTATCA
ACCATTGAATTCAAAGCCCAAAGCGCTAGACATGAAACTCCTGGATGGAA
AATTAAGCCACTTATTTCCCATCCTAAACGCCGTGACCCGCGTGGGCCAC
AAACGTTAGATTAAAAGTAAAATGTATCGCCAGATTTTGCAAAATATCCT
GCCTAAAAACAAAGAAGGGGTTGGATTCAATCCATCATTCTAAAGCGCTG
CAATAAGGCTTCACTTTTTCTTGCTTTAGAAAGGTTGAAGACTCATCTCT
AGCTCCTTCGGGGCTTTGAACTCAATGTTATCAATCTATCATCTCTTTTT
TGGATGTTTTTGATTAAATTTCTATTCAATTTCAGTTTTCCTTACTGACT
TAATTCTTTATGTGTTCTTTGGAAGAGAATTTTTTTAAGATTTTAACATT
TGACGTTTGTTTGTTTCCCCATTGGGAATAATCGTCTCTTGGAAAGTTGC
TGTAAATGTAAGAGGTATTGTGGAAAAATTGTAGTAATTCATTCTCACTC
TCTATGCAATTCTTTGGTCTCTTATAGGTCTCCATGAAGAAGGAATTTTC
CGTATACCAGGAGCACAAGAAGAAGTTGATGCTTTGAAAAATAAATTCAA
TACAGGTAGGTATCAAACAATATTAGACAATGTTTTCAGTAGAACCTGAA
ACTGTTACTTAATAATATTTTAATGCTAATTGATCTCCAATTCTTAGAAA
AATGTTTAAAAAGGCGAATCTTGTTAATTAAGTGATGCCAAATTACAAAG
CAGGTTAAAGCATCAATCATCAGCTGAATGTGCTTGTACTGATGTACTTG
TATTTAATTGGTTTCCTTTTTATCAGGCTCATTTAAAAAAAACTGTGTTT
TTTCATATGTGTAATATGGGGAGATTCTGACTTTTCCTTTTTTTAGTATG
GAAAATAAAATTAACGTGATGTTGAAGTAAGGATTCATAATTTCATGAAT
GCATGTTAAATTTCATGAATGCATGTTAAATTTCTTTCTCATTTTCCATT
TAGGATCACTGAAAGAGTTGAAAGACGGGGAATACAAAGTGCACATTGTT
GCATCAGTTCTCAAAAAATATCTTGGTGATTTACCACAGTCAGTTATTCC
TCCAGATAATTACGATCAATTCATTGCTGTCGGTGGCTGTAAGTTTGTGG
CTTTCTCAACTTTCATTCTTGAAGAAAATGAAATAAATTAAGGTCGAAAT
GTTTTGTTTTAAAAGTATTTTTTAAGTAAAGTTTATATTTAAAAAAAAAG
AAACAAAAGAGCAGAAACAAATAAGAGAGTGGCATGGTTAGCAGTACAGG
ATCGAAAAAGTTGACCGGTTTCATAATGATACCAGTAACACTTTGTGGAC
GGCTTTGTTGAAATGCAAATGGACTTAGGGGCCGTCCACATAGTACGTAT
TATGTACTAAGTGGGAGGGGGGTAGGGGTGTCGCGTCAAAAGCGAATGCT
TGCGTACAGGGAGAGGAGGGTCGAAAGAAAATGTACGTACGCAAAAGAAA
TTTTTACAGCCCCTTTTTTCATGTAAAATTCTGTGAAAGAGATAAAGAGT
GAATTGTTGTCCTGTTTTTGTGAAATAATAAGCGACCAGGTTGTTTTTTG
ACAACTCATCGTCAATGCGACAAATAAAAAGTAAAGTTTGCTATTTGAAA
TATAGGCCCAAACCAGACAATTTTTTGCTGGGGGGTGAAAGGAAAAAGTA
CGTACCAACAAGGGGAAATAGGCGCATACGCGTACACTTGCGTACACGGG
GAGGGGGGTACTCGATTTTTGACATTTTAGTGCGTGCGTATTTTCAGCTG
GTCCTTACTTTGCTTTAGGTCAGATAACTCAGCGGTAGAGCTCAGGAAGG
TGACAAAGTGAATTCGATTGAATTCGTGACTATTTCTTTATAAAGCAGAA
GGTAGAAATATTAGACTAGTAAGAGCCCGAAGGCTAAAGTCTTTACTGTC
TGGCTCAACCAATAGAGCGTACGGATACGAATCAGATCTATCTATAAATT
GTGTATTCATATGTCATTAGCTCGGCTTTTTATAGGGACAGACGCGGGCC
ATGATATTGGGTGTCCTCTCTAAATTTGGCACAAGCTAATAACTGCCTGT
TTTGTGGACCAGCTAATGCCTTCTGTTTGTTTGGGCCATTAGCGGGTTAC
GAAAGGGTGATTACAGATCTAAATGGTCATTTCACGTTGTCTCAAATTGG
GCCATGTTGAATCAATTGCTGGAACCCAATATATGAGATGATCTAGGATT
AGGTCCGCATGACAGTGCTATGCGGACAATGTCCTTTGGGGCGTCAAAAA
TTAGATTGGCATTTTTATGTAAATATCTTATTTCCTATTTTTTCATTGTA
ATGCGGGACAAATATTTTGAATCTACCTAGGACAGGCCAGAAAACACACC
CAAACATATAACAGATTTGTCATCTAATAGATCAAGAAgttaatcatttt
tttaaattttatttattacacaaattatcaataaaaaatttacaaaaagt
tCAATATGTGAAGACAATTTAAGACTTTTGCAACCTGTACATGTTCAGGG
TTATTCTCGAGAATTACCAATCCCTTGGGACAGTTTGTCGGACGCAGACA
CTGaatttgttgttgaaatacatgTGAGCTGGACATTGTCGGCAAGAAGC
GAATCCATTAGAACATTGAACGTAATATTGTGGCATGTTATTGTCTAGTC
GGAACAATTCACCATTTTTAACGCCAACGCACAAATAATCGTCACCTTAA
ATAAATGAGAAGAAAGTTTTGTTAGTGCTCATggaatttccccaaatttc
AGCTTGTGTAAAGcaaaaaaaggaagaatttaTTAGATCAGACAAACATG
CTTGTTATTTAAAGAAGCTTTTTACCACTCTGACTTAAGACAAGTGTTTG
CTATATTCTTacattttggtgattttggtttGCCTGTCTTTGTAGGAGCA
GCTCTTGTGGTTTTAGTAGGGGCGGCTCGTGTGGTTTTAGTAGGGGCGGC
TTGGGAagtcgttgttgttgtagtaGGGGCAGCTTGGGTGGTTGTGGTGG
TTGTAGTAGGGGCGGTGGTCGTGGTGGTTGTGGTAGTTGTTTTCTTGAGT
GGACGAACACAAGCTTTAAATTTCTCATTGAAAATCAAACCATCAACACA
TCTTCTGCATACTGTACCGGTGTTTGAGCAAGTTACAAAATAAGCTGGTT
TGTGCTCGCTGTATGCGAAGATATCTCCAACTTTTCTCCATTTACATAGG
GAGTCTGGACAGGAATCGTGAGAATGAGGTGCTGCACTGCaagctaaaaa
aaaatcaaatgattaaaCTCATAACTTCAACCATGACGATATCACACACT
ggcctttttttaatttcaagatAAGGGCTCTAAATAATACAGGTACTTTC
ATTGTATTGTATTCGAGTCCAAAGTCGATGAATATTAAGCGCCTACCTGC
AACTAAAGCGGCTAGTATGATAATCTTCATGATTTGAAGGTTTCTGTAAA
CTTCGTCCGTTGTTTCTTTGTGACAAAGCTTGAATGGTTTTCCAGACATT
TTCAGCTCTATTTATACCCAATTTAAAAATGCTGATTCATTTAGTTTGAA
TTAGTCTTTCAATTATAAGACTAATTAATTTTTGGTCTAATTTTTGATGT
AACAACTTCCTCACCACAAAAATTGgggtttttaatttcaaattcatttt
taatCAAGTAAATTACTTTAAGGGTTGCAACTGGGTTCAAACATTTTTCT
CTAATTGATACAATTTTCTTTGTGAAATACTTAAGGGGCATGGTAGggga
aaaatttcattaaaaaataagtGATTCTAATTAGCGATCTGGCAATTTAC
TTGTGATTAAACCGATTGCAGCTTACTAATAATTGCTATTGCTGCCTGGG
AAACTGAAACAAGTGTATGAAGTTTGGGTTATCTACAGATGCCTGAATAA
AAGATCGCATAAGTATCAGATTCGGACCGAAATTGAAAAGAATGAAGTGT
CCATTCGTTTTTAGTGTGTAATAATTCTTATTTCGCTTCTCATTAACGAC
CAGTTATAACAAACTTGCTTTATATATATcgaatatccagggggttagcg
attttgttcaaaagtggatatccagggagttaaatatctacaagggagcg
gatatctagggggtaaagtgtcttttaaagtaaaaaatacgatatccagg
ggtaagcatctttataagagaagatatccagggggttgagcatattttta
agagtggatatccatgGGGTCTTTaataataaagtaggatatccaggggg
ttcgatacttcgaaaaatcaatatcctcaacagtggggtaaaatcttttt
ttctggaaaagcctaatATGACTAACATGTTAGACGAATAATCTAAACAT
agtagaaaataagcaaaaaaatggaaggaacaaattttagtttaaaCAAA
CTGATGTTATCATAGCAATGATATTTCTTTATTACAGGGTTTATAAACGA
CTACAGTCTAGGTTGAATGTCAACAGTATGTCAGAACGTGCGCCTTTCAT
TGAAATACAAAATGTATGAAGGCAGGAAGCCGTTAATATCTTTTGGTTTA
TTCTTCATAATTTGTTCACCTCGTTAAGCAACTATTTCAATTACAAGAAT
TGATTAGAATAGATTAAAACTAATTTTGTGATAGAAAAAAGGAAagcgat
ttaaaaaatcactgtAATCTAACCTAACTTTAGGAGGgggtaaatttgaa
aacgaagGTTAGCCCGGGGCAGGTGAACAGCTACGGAGGTGTTTATAGTA
TTCGTTCCAAGCTCTAccgccgatttttttttctcgtaaaCCGCCCACTA
CGGCTGTAAGCTCTGCACAAATATTTTTACGCTTTTAATAATATCCCTCT
AATCGTCTATGAAGTAACTTCCATtctactttttgaatgtttggaACTCA
GGTTCTTCCATAGTATTAAAACTTTCCAAAATCTAGTGAAGATTTTATCt
ttaatttcaacattttctgCAGGGGGGGTTAGATCAATGCACATATTAGC
TGAAGTATAAAATCTGTTCGAAGGTTTCctcttttttttagttttctttg
ACTGGTCATTTCTATTTTCTTTCATAATTTTTCCAGTGTTCAAAGAAGAT
TCAGATGAGGCTATGAAGAAATTTTCTCCCGTTTTGAAAGACATACCAAA
AGCTCACTTCGATTTACTCAAATATCTATggtaactttttaaaaaataga
tATGTTAAATCATAGTCCGTTTAAAAAttcctggtctggaagcttattga
tttatctttgttaatatcaaaagataaaaatcgactAGCTcatttttgat
cacgttaccaagtactcctcttgggattggtttaagatttaatcacatga
tcaaaacgttagcaaaacaaactaatttttcAACGCAAGTCTTGAAGCAT
TTTGTCTTCATGTATGAAAcaacaaaaagaagcaaaatgcTTCATCCTGG
TCGGGGTTTTTTATACAGACTATGGTTAAATTCCAGGTCCCCGATTGATC
CTTTGAATACTCAGAAGCCAGGTATTGGCAAAGAAATTTGCCCAGTATAC
CGGTAGTTCAAATATCAAGTTTAGCAATTTGAGTAAAAATTCTATATTTG
GCTCCCTAGATTTcgaggtggggggggggggAATTTTCTATGGAACAAAT
TTGAGAAGAAGAATTTTACGGAAGGGAATTACCCTGGGCAAATTTGTTAG
CAAGATATTCTGTGTTTTTAAATGAATCATCTTTTACTTATAGTGTCTTA
TATAAGGTATATGGTTTTTTATTGTGGTCCAAAGAAAGGTATCTTTTATT
TAAATGTCTTATTATCGAAGTCATACTCGAGGCAACCATAACACCCTTAC
ACAACACTAATGTGTATTCTATTTATACATTACAGTCGCTTTTTATACGA
ATTGAAAGAATACCACAATGAAACGAAGATGACGGTCGAGAATTTGGCAC
TCGTTTTTGGACCAAACATCTTACGACCACAGGTTAGTATAGAAGTATTA
TCATTGATACTGAATTTTCAGAGTATGAGTGTTTTAAAGAAACGTCTGAT
TAAAATAGTAAGAAAGCTTTTTCTTTTTCGTTATTCTTTTACATTATTCT
TTTAGAATTAGGTCGCTTAGTGCAGACCATTTTAACTCGAACGGTTCGAG
TTAAATCGAATTTTTCCGAACTTAAGGCCGGTCTCCACTTTCGCGTGAAA
TGGGCGACAGTTTTTTTCTCAAAATTTTTTGCCTGAAGAAAAGATTACGG
CATAAAAAAGTTTCGCGTTATGTCAATTTTGACCAATGAAATTGCTTCAT
TTTTCAACCGATCAATGACCTTTACAAAAACGTTTTTCGCTCATTTCGCG
CGAAAGTGGAGACCAGCCTTTACCTGCATAGGCAAAATTTGTTTAAGAAG
AGTATTCCTTCTATTATTATGGAATCTAACACTCTAGAAAAGTTAGTTAC
CTCTAATTCCTATTCAAAGCTTCATGCCTTGCAGAAATTAATAAAGAAAT
TACACGAAGTTGTTGCAGTAAGCAACCAGTGTGGAAAGTCCACGCCGAAT
TGTAATTTGTTTAAACTGAGGTATACGCCAAAAAAGTTCAACAGGCAGGT
AAATTGCAGGGGTCGGGGGGGGGGGCGTTGTAAGGCCCACAAACGGGCCC
AGGGCTGACGAAAGCCTGGGGATATTTGATCTTCTCACGCTTAAAAGTTG
CTCACAATAACCGTTACGTTATGTTCTATTTACATTCTACGTCGTTATAC
GGCGGTCGAGGGAGAGGCGGAGCGAGGTGGATGCGCTTAAACCTGGCGTA
ATGTAATTACTAGTTTCAATCAACAGgctatttcatatttttattagAAT
GAAGATCCGGCTATGTTACTGCAATGTTTATCAGAAGCCAACACGACCAC
AGTTGCATTAATCAATAATCAAGCCAATCTCTTCCCTGTCACCAATGACG
AATGTTATTATGATCCAAACAGAACTCTGTATGTTATAACAACTATACTG
CTAGCCCGggtggggggtactagggttgcgagctgacggggggtgccgcc
cgactttcgaccctcccttggacccttaccaggactaaaaaagagaaaag
aaaggaacattttttaaatattacgacccttattgggacaaatttgacca
aatttggatctttctgggggtaaaaagttgaaattttcctatttctccta
cCTTTAGTGAGActgaagttttattttttgatttttccgacccttagcgg
gatttTGGAAATCCACGAATCAGCACGAATCAAGCAAGGCTCTCTTTCCA
GATTTTCcaagagaaaattttctcattttcgtaGGCTAAATGATCACAGA
ATGAACGATTTGATTGACTTCGATTCGGAGCAAAGAAGTGCGACTTTCGA
CTATCACAAATGCAAATCCATACCTACTCTTGCAGTGAATGGTGAACTCA
AACGTTCATTATCTGAAAGTAGTTTACATGATATCGTTATTGAAAGTAAG
TATATAGTGTGTTTCAAAAAAAGGGAactttatataaagtaaaattctcA
TAATTTATGCGAAATTGTAATCTCAAACACCTATTTTAATCATCNtggaa
caaatttttatataaagtaaaattctcATAATTTATGCGAAATTGTAATC
TCAAACACTTATTTTAATCATCTTGGGGATTGAGCAAAGAATTCTAATCT
TACTCCAATCATTCTAAGACCATATCAGAAGTTTATCGTGACTTAGATCA
CCAGATTTaagtttggctacgtttcgagagattcttctcccatcatcggg
caatgtGGAGGATATTTATTCCACTATTTGTACTAATTTGAATCTCGTGA
TCCAGCCACgttaaacttccaatatgaaaaTATCACTGGATCGATAAACT
CAAACTTATTTAGATCATTCTAAGCCCAGTTAAGATAaagagttttgagg
attttactttttataaaaattagtTCGCtcttttgggacacactgtattt
tTCTTTACACCTGCCGTCATTAAGATAAAACAACAGAGAAAAAGATGTGT
ACATGTATGTATTACACATCTCCAGTACTCGTAAACATCCTAACCAGTTA
TCAAAAATCTAACGAAATATCTTATCAATAGAAACTTTGTCGGTGAGAAA
AATCGATGGCaaagaatatttaatttttactGACGAATATTTTCTGGCAA
TTCTTAAGTGCTAAAATAATcaactttaaacaaaaaaatgctcaAAGTAA
TCACAaatcattttgtaaaaaatattcgTCGCAGAAAAGGTCGCCGGCCT
TAAGTTTCGTCACCAAGTGATTTTTTCTAACAATAAGGCAACtattgttc
gtttttttttagaTGAGCGAACAAAAAGTTTATCAGGTAGTCCATCTTCA
ATGGGTAAGGAATTTGTTTGTGTGTGTTTTGGGATTTAAAATATGATTTA
TCATTAAAGATGTCATATCGTCTGTTTTTCCTTACTTTTTTTGTCGATTG
TTGGGACCGTTCATCAACTTGAGAAAGTTGGGTTTGGGGAATGAAGGGct
ttaaattttccttttcagaAGATGCATCTATTAACATTTTCATATTGATA
CTTAACACCTTTTAGAAGAGGCAGCAAGTTTACGTCAAGAAATGGTAGAT
ATGAAATTGGATTACGAGGAGCAGATATCGGACCTAGAGAAGAGGCTGGG
TGAAGAGAAACAAGTTCAAAAACTTCTCAAAATTCGATTGGTTGATGAAC
AAAAAGCAAGGTTAGATATTTTGAACTCATCCATCTTTTAGTAATTTCTT
TATGACCCCTGCGGTAGTACTTCTCCTAACACCATTGCGAAAAACGTGTT
TTCCTCTTCACGAACACGAAATCCTTTATCCAAATCACGCATTTAAATat
aggctgcgcgcatccccaAGATTTATTTATAGGGGATGCgttttgtgtat
aaaattgtagTTCGAGAGTTACCTCCGTCTTTGTAATTTTGAAGGGTATA
TTTTACAGAACAAGCTGAGTGAACGTTACACTTTCTATGTATCGAAAAAC
GAAGGAAAGTCATGTAGataccaaattttaccaaatttgTACATAAACTA
CGTTGTATAAGAATAGCTTTTAGACTATTCTATGTCATGATATTCTACAT
TTCAATTACGTGTATGGAAATCTTTTTTCATCTTCCAGGCAAGCTTTAGA
AGAACGACTTGAATTATACAGGGCAGGTATAGAAGAATACTGCAGGAAGT
TTGGGCACGTTGATATATCTATCCgataaatgaacaaaaaaaatcttgaa
gaaAAAGGAGTGTTGTTGGAACAACTCAACAGGCAGGATACTGGTTGAAG
TTTCTTCAAGCGCCGGTTGCTTTTCCCCGTTGATGTTatcattttgaaag
tttgagtaTATTTCTCgatattcaaaaaattgaacaggggaATAATTTTG
TCATTGCTCTTGTTTTTGCATctaaagggaactaattttaacGAAAACTA
AGTCGTAGAAAAAATAAAGTCAGTGGAcagcatttttttttcttttgggc
AAAAACTGAAATTGGTAAATGACAGGGAATTTTTTTGTAGACTTAtgtaa
agtttattttcttttttgtagaaaatttatagagtatttttttctaattg
taCATATCTATGAAATACTGTTTAATAATCGATAATTTTTATAATATTGA
AAAATTCCTATATTTTTATGATATCAGCATTTAACAAACTTTACTCTCAT
ATTTTTCTATTAAGccctaaaattttcaaagtcagAAGTCTTTTCGTTTT
CATCCATAGTGCGACTGTGTTAAAAACTCGAGTTCTTACCGAGTGACACT
ACCAAGCATGTCAAGAAATCTTTCTTAGACCAACGTAGCTTGATTCTGTT
ACTCCTCCCTGAAAATGTTAACTTCATCAGCAAAATATTGTGtactaaga
aaatattttaatgataGCATGAGGTAAATTAATAATACATAATAATCAAT
ATACATTTCTATTTGTACCAACCCAAATTTACCGTTTACGGCTCATGGCT
GAAGTAGGGCTAAGGATTTTCAGGATTTGAACCAAAGATCTTTATTGGTT
TTAAGCCAGAATTGCTATACTAAGCAACATCCAAAATTTGGCCTTCCAAC
TCATTTATTGACTAAAATGCTTCAAATTAGGCCTCTGTTAAGCATTTAGA
AGCCAGCTAAAACCAAAAATACCTGATTTTTAAGTGTTTATGATTGATTT
CATAGCTAGTTTCAACGCTATGGTTTCTAGTCAAGCTACTTATATAAGTT
TTGGACATTTTCAGGGCTGGGTATTAGCAATTAGGGAGGGGTATGACAGG
TGGTGTGAATTAGGGCATAATAGGTATAGTTATAGTTCTATAGGTATAGT
TCTTTATGACCTTTCTAAGTATGTTGTTGAAAATGGGCCGAGGACCTCTC
TTTTTCATCCTACCACTTCACACCATGGCAGTGCAAGGTCTCCTGGCGGG
ACTTAGAAAGAATTTTAATACTTTTCATTgtaattattttcttcttcaat
ttggctttttagatgaaattattatttttgtatACAATAGATTTATAGCG
GCACAGTAGGATAACTTTTTAATAGAGAAAGATTATTAGTtcataaatga
aataaaattgtaTGTGCTTTCTTCAAACCAAAGAGAGTGTTTAGACCAGT
CATGTTGTATTTAATTggcaaaaaattacaaagtaacTTTTTTTACCTTT
CAGTGACAatctttttattgatttgaattgttttgttttttttatttcta
agaGTATTGTAATTAAGAGTATTGGTTTTTGGTTTAAAATATCcttcatt
cgccaaattaaattccttcccgatcaaattaatagttaattgttaataaa
atttaattcaAGAGTAGGAAAATTCGTTTTTCATTTGTTCTTTCTTGAGT
ATAATTTATGCAACGGACGGcatacaaagaaaaaagaaaacttacaaaat
ataaatcaaaTCAATTGTCGTGAAGTttgaatatataaaattttaaaact
ttattattcTTTTAAGagaatataatataaaattcaaaatttcttttaaa
gcctttaaagtttAGGTATGTTATTATTGTCGTTTCAGGAAACAATGACA
GCAAAGAAGTTTCGGATTTTAATTGTACTCCCGCTTATTATTCAGAATGT
TATCCTTGAACAATGCAGTCAAATGTCATTTCAAAGATTGGAtggaattc
attttgaaattcttgatAGATACACAAATCTTCCTATTGACCCTTTTGCT
AACTTCCACGAAAATAGCATCGAAAATTGTCTCACTAGATGTTACCATAC
AAAAAACTGTATGTCTTTTCAAGTCCAAAGATTCGATAGTTATCATTTCG
GTTGTTCACTTTATTGGTTTGCTACTAAACGATCTGGTACAANGTAGTTA
TCATTTCGATTGTTCACTTTATTGGTTTGCTACTAAACGATCTGGTACCA
TATTTACTCGAAAGGAAAACAGTACAGCCTTCATATCAGCAATTAATTTA
GAAAGGCTGATTGATTTTTCAATAGTATCATCAtgcaagaataaaaaaaa
tgatttttatcttATGTCGTTGAAAAGTCAAACAGAAGAAAAATATCGCT
ACGCTCGTTGCAATGGTTTTGGTCGAGAAATCATTGGCCAACTAAAATAT
CCAAAAAGAGTATTTTCTCTTTCTTCAGTGAATGGAATTTTTACATCAGA
TTACTGGATCGGGTTAAATGAACTCTCAGATCGAGTCCAAAATACTGACT
TGCTAATCAGCTTCACTGTACCATATCCATTTGTTGAGAGTGATCTAATA
GCCATTTACAAGGACGTCACAGTAGGAAAGGAATCAGATTCGTGGGTTTT
CCGTGGGACATTTGCATCAGCCACATCAACTGTCGGAGACATGATAGATC
AAGTTgcttttaacaaaaaacgtGGCTGGTGGATAAAAAATGACCAAGAA
AAACCTAATAAAGATCAATTCGTTACTCAAGATGGGTGCTCTTTTGATCA
CGAGGGAAATTTAGGTGAAACACAGCTACCATTTTATTGGAAACTTCAAA
ATGGCACATATTTTTGCGCAAAAACGGTCCAAATAAGAATCTAATATATc
ataaaatttaacttttatcaacaaattataaaaaatatgattGCTTGTCA
CATAGAGAAAGTGTCTACTTCgcatcattttcaaaacaaagttaaaacgc
atgcgtatTTATAAACTGTTAGTCGTTATTTTACGCAATATacgtacagt
cactttcggtcgttCTTTTTAATGTTGCGAAGTAGGCACCTTCTCCCCCA
CTTGTAGTCGATATTTGCACTTTACACTGCATCACAGTttgttgaagaaa
aaaaacagtcCCGTTAATAACTAATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033170XLOC_033170Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052454-exon-scaffold_214-1491911889:145898..146025TCONS_00052454-exon-scaffold_214-1491911889:145898..146025Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1510915933:145898..146025TCONS_00052454-exon-scaffold_214-1510915933:145898..146025Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1575043694:145898..146025TCONS_00052454-exon-scaffold_214-1575043694:145898..146025Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1491911889:146702..146779TCONS_00052454-exon-scaffold_214-1491911889:146702..146779Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1510915933:146702..146779TCONS_00052454-exon-scaffold_214-1510915933:146702..146779Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1575043694:146702..146779TCONS_00052454-exon-scaffold_214-1575043694:146702..146779Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1491911889:149651..149785TCONS_00052454-exon-scaffold_214-1491911889:149651..149785Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1510915933:149651..149785TCONS_00052454-exon-scaffold_214-1510915933:149651..149785Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1575043694:149651..149785TCONS_00052454-exon-scaffold_214-1575043694:149651..149785Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1491911889:153784..153877TCONS_00052454-exon-scaffold_214-1491911889:153784..153877Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1510915933:153784..153877TCONS_00052454-exon-scaffold_214-1510915933:153784..153877Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1575043694:153784..153877TCONS_00052454-exon-scaffold_214-1575043694:153784..153877Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1491911889:154583..154679TCONS_00052454-exon-scaffold_214-1491911889:154583..154679Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1510915933:154583..154679TCONS_00052454-exon-scaffold_214-1510915933:154583..154679Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1575043694:154583..154679TCONS_00052454-exon-scaffold_214-1575043694:154583..154679Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1491911889:155545..155675TCONS_00052454-exon-scaffold_214-1491911889:155545..155675Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1510915933:155545..155675TCONS_00052454-exon-scaffold_214-1510915933:155545..155675Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1575043694:155545..155675TCONS_00052454-exon-scaffold_214-1575043694:155545..155675Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1491911889:156032..156192TCONS_00052454-exon-scaffold_214-1491911889:156032..156192Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1510915933:156032..156192TCONS_00052454-exon-scaffold_214-1510915933:156032..156192Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1575043694:156032..156192TCONS_00052454-exon-scaffold_214-1575043694:156032..156192Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1491911889:157060..157101TCONS_00052454-exon-scaffold_214-1491911889:157060..157101Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1510915933:157060..157101TCONS_00052454-exon-scaffold_214-1510915933:157060..157101Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1575043694:157060..157101TCONS_00052454-exon-scaffold_214-1575043694:157060..157101Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1491911889:157313..157457TCONS_00052454-exon-scaffold_214-1491911889:157313..157457Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1510915933:157313..157457TCONS_00052454-exon-scaffold_214-1510915933:157313..157457Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1575043694:157313..157457TCONS_00052454-exon-scaffold_214-1575043694:157313..157457Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1491911889:157886..159429TCONS_00052454-exon-scaffold_214-1491911889:157886..159429Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1510915933:157886..159429TCONS_00052454-exon-scaffold_214-1510915933:157886..159429Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1575043694:157886..159429TCONS_00052454-exon-scaffold_214-1575043694:157886..159429Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1491911889:159836..161124TCONS_00052454-exon-scaffold_214-1491911889:159836..161124Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1510915933:159836..161124TCONS_00052454-exon-scaffold_214-1510915933:159836..161124Clytia hemisphaericaexon
TCONS_00052454-exon-scaffold_214-1575043694:159836..161124TCONS_00052454-exon-scaffold_214-1575043694:159836..161124Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_214supercontigscaffold_214:145898..161124 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.081649	0.106153	0	0.110496	0	0.048183	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00052454 vs. Swiss-Prot (Human)
Match: RHG22 (Rho GTPase-activating protein 22 OS=Homo sapiens GN=ARHGAP22 PE=1 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.719e-47
Identity = 89/221 (40.27%), Postives = 136/221 (61.54%), Query Frame = 2 
Query:    2 FQPLGGGMFGRSIRETMNIESRRGAGMVPIIVELCVEYIKKHGLHEEGIFRIPGAQEEVDALKNKFNTGSLKELKDGEYKVHIVASVLKKYLGDLPQSVIPPDNYDQFIAVGGLFKEDSDEAMKKFSPVLKDIPKAHFDLLKYLCRFLYELKEYHNETKMTVENLALVFGPNILRPQNEDPAMLLQCLSEANTTTVALINNQANLFPVTNDECYYDPNRTL 664
            + PLGGG+FG+ + ET++ E + G  + P++VE CV++I++ GL EEG+FR+PG    V  L++ F+ G  K L D    VH VAS+LK YL +LP+ V+P   Y+ F++   L  +D  E   + +  + ++P+A+++LL+Y+C+FL E++ Y N  KM+V+NLA VFGPNILRPQ EDP  +++  S        LI   + LF     E    P   L
Sbjct:  145 WAPLGGGIFGQRLEETVHHERKYGPRLAPLLVEQCVDFIRERGLTEEGLFRMPGQANLVRDLQDSFDCGE-KPLFDSTTDVHTVASLLKLYLRELPEPVVPFARYEDFLSCAQLLTKDEGEGTLELAKQVSNLPQANYNLLRYICKFLDEVQAYSNVNKMSVQNLATVFGPNILRPQVEDPVTIMEGTSLVQHLMTVLIRKHSQLFTAPVPEGPTSPRGGL 364
The following BLAST results are available for this feature:
BLAST of TCONS_00052454 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RHG225.719e-4740.27Rho GTPase-activating protein 22 OS=Homo sapiens G... [more]
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