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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052458 ID=TCONS_00052458|Name=TCONS_00052458|organism=Clytia hemisphaerica|type=transcript|length=6368bpRun BLAST on NCBI protein sequence of TCONS_00052458-protein >TCONS_00052458-protein ID=TCONS_00052458-protein|Name=TCONS_00052458-protein|organism=Clytia hemisphaerica|type=polypeptide|length=526bp MRSVSPLERNMYRQHERKRSPSPRNERKSHSPHHQDNPYKWVRKRSKSPPRun BLAST on NCBI transcript from alignment at scaffold_214:168579..228041+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052458 ID=TCONS_00052458|Name=TCONS_00052458|organism=Clytia hemisphaerica|type=transcript|length=59463bp|location=Sequence derived from alignment at scaffold_214:168579..228041+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_214:168579..228041+ >TCONS_00052458 ID=TCONS_00052458|Name=TCONS_00052458|organism=Clytia hemisphaerica|type=CDS|length=1581bp|location=Sequence derived from alignment at scaffold_214:168579..228041+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00052458 vs. Swiss-Prot (Human)
Match: KHDR3 (KH domain-containing, RNA-binding, signal transduction-associated protein 3 OS=Homo sapiens GN=KHDRBS3 PE=1 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 3.248e-42 Identity = 124/272 (45.59%), Postives = 168/272 (61.76%), Query Frame = 2
Query: 242 MDDTYLQSLLEEKDHLDPKSFPHAIRLIEDEILRVSGKGDTLGRAELDEEGGGEKKPRYRTYAGGIVTEEXXXXXXXXXXXXXEYPKFNFVGKLLGPRGNTLKRLQQSTQTRMSVLGRGSTRDKAKEEELRNSDDPKHEHLKDPLHVLIEVEGPKSEXXXXXXXXXXEIQKYMVPE-NDEIRQEQMREMALLNSIEVGGETSGM-----KSTL----VP------GRG----RPLAPIIRVGIPPPGAIILNGAQATVASVRGRAVPRIARG 997
M++ YL L+ EKD LDP SF HA+RL+ EI E ++G G+ + +Y +V + +KL KV++PVK++PKFNFVGKLLGPRGN+LKRLQ+ T T+MS+LG+GS RDKAKEEELR S + K+ HL D LHVLIEV P +EA+AR+ AL EI+K+++P+ NDEIRQ Q++E+ LN G E + + K TL VP GRG RP+ ++ G P P ++ + V+ RG PR ARG
Sbjct: 1 MEEKYLPELMAEKDSLDP-SFTHALRLVNQEI-------------EKFQKGEGKDEEKYID----VVINKNMKLGQKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRDKAKEEELRKSGEAKYFHLNDDLHVLIEVFAPPAEAYARMGHALEEIKKFLIPDYNDEIRQAQLQELTYLNG---GSENADVPVVRGKPTLRTRGVPAPAITRGRGGVTARPVGVVVPRGTPTPRGVL--STRGPVSRGRGLLTPR-ARG 248 The following BLAST results are available for this feature:
BLAST of TCONS_00052458 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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