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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052461 ID=TCONS_00052461|Name=TCONS_00052461|organism=Clytia hemisphaerica|type=transcript|length=5836bpRun BLAST on NCBI protein sequence of TCONS_00052461-protein >TCONS_00052461-protein ID=TCONS_00052461-protein|Name=TCONS_00052461-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1136bp MALGKGRGKVAYADIKKDDHSMAGPRNNGSFTPSTTEQAMDEYLRNINMYRun BLAST on NCBI transcript from alignment at scaffold_214:236116..253332+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052461 ID=TCONS_00052461|Name=TCONS_00052461|organism=Clytia hemisphaerica|type=transcript|length=17217bp|location=Sequence derived from alignment at scaffold_214:236116..253332+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_214:236116..253332+ >TCONS_00052461 ID=TCONS_00052461|Name=TCONS_00052461|organism=Clytia hemisphaerica|type=CDS|length=37521bp|location=Sequence derived from alignment at scaffold_214:236116..253332+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00052461 vs. Swiss-Prot (Human)
Match: OTUD4 (OTU domain-containing protein 4 OS=Homo sapiens GN=OTUD4 PE=1 SV=4) HSP 1 Score: 229.565 bits (584), Expect = 7.209e-61 Identity = 132/328 (40.24%), Postives = 187/328 (57.01%), Query Frame = 2
Query: 335 DHSMAGPRNNGSFTPSTTEQAMDEYLRNINMYRKPVAKDGSCLFRVVAEQVFFTQFLHKKVRTDCISYMNVHRKIFESFIEGSFEHHLFNLRNLKEWGGHSEISALSLLYKYDFIVYQIANPTPQDVTKNGFDKKIHLCYLNNNHYDCVYPISFKSSAAIAQSIVYEILLGNVF-AEVDKREMEADCTAI-----SEAEESQDPSAWTEVKTKQ---NKGKMVDGKQSDNPWENLISVIPESNKNPRVMRSLTASLDPSVYRNIELDVWENTRSEQQKFDQVVAAAHQFKPGDVCIATIRESKD---------HSKQVIVRVQKVGEK 1264
D AGPR + + MD YLR + +YRK VAKDGSCLFR VAEQV +Q H +VR CI Y+ +R+ FE+FIEGSFE +L L N +EW G EISALSL+Y+ DFI+Y+ N +P VT+N F +K+ LC+ N NHYD VYPI +K S+A+ QS++YE+L VF +V K ME D + SE +S+D S ++ N K + G + N S+ + R + SL+P+VYRN+E ++W ++ QQK D +AA Q++ GD C + + HS+ V V+++G+K
Sbjct: 12 DQGGAGPREDAT--------PMDAYLRKLGLYRKLVAKDGSCLFRAVAEQVLHSQSRHVEVRMACIHYLRENREKFEAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNVSPSQVTENNFPEKVLLCFSNGNHYDIVYPIKYKESSAMCQSLLYELLYEKVFKTDVSKIVMELDTLEVADEDNSEISDSEDDSCKSKTAAAAADVNGFKPLSGNEQLKNNGNSTSL--------PLSRKVLKSLNPAVYRNVEYEIWLKSKQAQQKRDYSIAAGLQYEVGDKCQVRLDHNGKFLNADVQGIHSENGPVLVEELGKK 323 The following BLAST results are available for this feature:
BLAST of TCONS_00052461 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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