TCONS_00052462 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052462
Unique NameTCONS_00052462
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length5633

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052462 ID=TCONS_00052462|Name=TCONS_00052462|organism=Clytia hemisphaerica|type=transcript|length=5633bp
GAAGACAAATGGATAGACAAGCCCACACTCTCTGGTCCTATTCGTAATAC
AAGAACCTATGATTGTGGACTTGGAGAATGGCACTTGGTAAAGGAAGAGG
AAAAGTTGCATATGCTGACATCAAGAAAGATGATCATTCCATGGCTGGTC
CAAGGAATAATGGCTCTTTCACTCCAAGTACTACTGAGCAGGCAATGGAT
GAATACCTCAGAAATATAAACATGTATCGTAAACCAGTTGCTAAAGATGG
TTCTTGTTTGTTTCGCGTTGTAGCTGAACAGgtCTTCTTCACAcaatttt
tacacaaaaaagttCGAACAGACTGCATTTCTTACATGAATGTCCACAGA
AAGATTTTTGAATCTttcaTTGAAGGCTCATTTGAGCATCACCTGTTCAA
TCTTAGAAATCTTAAGGAATGGGGTGGTCACTCAGAAATATCGGCACTTT
CACTTCTCTATAAATATGACTTCATTGTATATCAAATTGCAAATCCAACT
CCACAGGATGTTACAAAAAATGGTTTCGACAAAAAGattcatcTCTGCTA
CCTGAATAACAACCATTATGATTGTGTTTACCCAATCTCTTTTAAATCGA
GTGCTGCTATTGCACAATCCATTGTGTATGAGATTTTACTTGGGAATGTA
TTTGCTGAAGTTGATAAACGTGAAATGGAAGCTGATTGTACTGCTATATC
TGAAGCTGAAGAAAGCCAAGACCCCTCTGCATGGACTGAAgtaaaaacta
aacaaaataaaGgaaaaatggTCGATGGTAAACAATCGGACAATCCTTGG
GAAAATTTGATTTCGGTCATTCCCGAATCAAACAAAAATCCACGAGTTAT
GCGTTCCTTGACGGCTTCTTTGGACCCTTCAGTATACCGAAACATTGAGC
TAGATGTATGGGAAAACACTCGTTCTgaacaacaaaaatttgatcAAGTC
GTTGCCGCTGCACATCAGTTCAAGCCAGGGGATGTCTGTATAGCCACTAT
CCGTGAATCGAAAGATCACAGTAAACAAGTGATTGTTCGAGTTCAGAAAG
TGGGAGAGAAGTGTATCGTTGTTCCCGAGGATAAGGATGTCCAATATTAT
GTTCATTTAGACGATCTCCAACCGATGGTGAACGGAGAGCACGACTACCG
ATCGCTACCCGGCTACTATAATAAATACGAAAATGAACAAGAATTTCAAT
CGCAAAAGAGACGGAAATATCGTAAAGGTCGTGAAGAGGAACGTAAAGTa
aatgaatttcaaaacaatcagCAAAATAGGTCACGTGGTTCTGCACCAGT
TGAAAAAGACACTAACAGAGGAGGAGGTCGTAAAAATAACCAACGTAAAG
AAAAATCAGTTTCGCCAACCAAAAATCAACAGCGAGAGAATACTGTGCct
aagaaaacagaaaagacTGAAAATGAACTGGCACCTGTAGTCAACGGTAG
TGCAACGACTGAAGAATCTGTAACCAAAGTCGCCAAACCTGCGGAAACAG
CCGCCGCTTTTTGGGGCCGTATGCGGAGTAATCCTGCACAAGAACAACCA
CCCAACGATGTCACCACACCCACTACCAAAACAACTGACGAATtaattaa
gaaaaataatttaacccCAACAAATGCTAACAGTGATAAACTTGAAAGCT
CCGAACCCACTGACAGGGCACCTGATCCCATACAGAtagtcaaaaataag
aaaaaaactaaCACTGCTCCAATAGCTGATGCATCAAAACAAGACACTGC
TCAAATAGATATTAGAAATAATCAGAAATCACCTGAAACTACCACTGCAA
ACAGTCAACCCGTGTCATCACCTCCTAAAGACATTAAAAAACTTAGTCTC
ACTTCCCAAGCTAGTGCTAAAGTCAAGAAAGTtcgagaaaatattttgat
gagtAGTGCTAAAATTGAAAGTGGTTCCATTACATCTCCTTCTAAAAGCG
AATTAAAAGCTTCCCCAGTGAAAGAGGAGGTTCCTAAGAAAGTCACTGGG
GAAGATTCTATCGGTGTTACCATGGCAAAAGAGATAAAACAAGAGGCTCC
CTCGCCAATAATACAAAAGAGAGATGAGATTGAATTAGAAAAGCCACCAA
CTGTATCTCCCCCTACAATTCACAAGCACACTGACTCCACTAGTGGTTGT
TTAGAAACAAAAGTAGAACAACTTGACTTGAATAAGAACACACAACCCAA
TATTATAGTGAGTCCGGAATCACAGCGAAGCAGCGTCGAAATGAGCGAAA
ATCGTCCTACAAGACCGCCCAAACTTggtaaagtcaaaaagaaagttAGC
TTCGGATCGACAACTGAGATAATTGAGACAATACATAATATACCTTCACT
TATCCCACAACCAGATGAAATCCAACAAATGAGCCCGCAACAAGCGCCTA
TCCCACCACAAAAACAAACGCCCGTCATACCCAGTGGCGGGGGCGCTGGT
GGTGAGCGTGGTAAAATTCACATCCCTCGTGATCATATCGAGAAACATAT
GAACTaccaacagcaacaacaacaacaaagccATAATCAGATAAACATGG
AACTTCATCATCCAACACAACAAAATTATCAACCAACAACAACCGGCATC
AACCAACAACAACAGCACATGACGCCTGAATCTCTACAACAACAATACAT
TAGAATACTGCAATCACAACAACAATCACCTTTTGTCTCCCATAATACTG
CTTCAAATAACATTCAAACCTTCTATCACCCAGCTGCAACACAAGCCAAT
TTCTACCCCGTCATCTATCGACAAGGGAATAATGTTGATATGCGAACCAC
ACATCTTCAATTGTCTCAAGATCCAGAGGCTAAAGATCTACCCGAAGACC
CTCAAGTTGTGCAGTACTTTTACAACCTTGGTGTACAGTACTGTATGATG
ATGAGCCCTCAGAATTTCCATCAACAAGTGAACCAAGCAGGAATTCTACC
TTTGCCAGTGGCTAATACTCCAATACAACAAGTACCTGTCCATCAACTGG
TTCTCAATAATTCTAGCGAAAATTCCCGAAACACAACGAACGAGTTATAC
GTGGCTAATTCACCTCAACAACAAACGGAAACAAGTTTGATGGACATGCA
ACAACACCACCCTGTTGCACTGCCCTCACAAGCGCAACAAATTGTTACAC
CTGCTTCTCTCCAGACGCGCCTTCAACATCATCAACAGCCTCAACAAGCT
GCGACAAATCTCGCGACCGGTTTCCAGCACCAACATCAACCACGCCACCC
ACGACCTAATCTTTCCGATTACGAAACGCCCCCACGCCATCGTAGAGGCC
TGATTTCGCCTCATTCTGGCGCCCTCTCCCAGCACAATGTTGGTCTCATT
AATTCAAATTTGCACCATCGGTCCAACAACCAAAGACACATCTCACAACG
TCACAATTTTAACGGTGGGCGTGGTATTATTGGTCAAGGTCCTAAGCCAA
TGCGTATTGATCATATACGACCTTcgaataatttttgatgagattTTTCT
GTCGCCTTagaattttgtttcttgttttctgttttgttatagattttttt
cattttttatcattttagaaTTGAGTGCTTACAAGTTTGGTTGACGAgac
caacattttttaagcaTGAATATCTTCCTtccttttgttgatttttatga
GAGAGGAATTTTCAATTCTTCtatcattttttacaaacatttagaaaaag
aaatatgtttTTTAATATTCATAATTCCTTGCATTTTTACtctagaattt
tatttttctcattacaATAAATTACAATTTCTCAAATACCTTCATCTAAG
ACTCGAGATAAGATTCTGACATAGTTCACTcagaatacacgcttttttat
aagaataacttctataagaatgtcagggtgagatttcagagttagaacaa
aaggcctattgtttagaacaatagaaaaataagaataatgctcaccctca
gccaaagtacactattcttataaaagaaaaagcgtgtagatgATTATAAT
TTTGACTTTGTAATTCATTGTACCTTCTTTTCAGCttctaaaaaaataga
aataatgtCACATGATAAATTAATTTTGGATAAAGTTTTGAGCAAAGAGA
TGCAACATTTAGTTTACCTATTATCGTCGCCGAAACTCCCTCTCCAAAGG
GCAGAATCATATTTTAAAGTATCACGTCAACGAAATATGACTCATGCAAA
AGCTATTGGAAAATGTAACCTCGAAACTCTTTTTAGCATCTTGACAAAGT
CTGTAATGTTACCAGAGCTTGACTTGAATGGACATTTTAAAGAAGCACCA
GTGTTTTTATCGCTATCTTCACCATTGAAGCAAAACATTATCTTGTTTGC
ACGAAGGTTCAAATATGACTTTGATTATGATTTATGGAAAGAGTTTTTAC
AacaaaactttgcatttttggATACCTGGTGTAAAGTTATACTCGAGGAT
GAAATTCACCCAGATTCAACTTTTTGCTGTCTCTCAAATCAAACTCTTAT
TGACTTACGAGAATGGCATGACCTGAAGTTTCCTAATGTCCAACAATTTC
ACAAGACAGAAAAGGGCCGGCGAAAAAGTGACGTATCCCCACCGCCCAAA
AAACGTCAAAGGTGTCAAAGTCCGGATGACTTCTTCATAGATGACGATAt
cgatgaaaatgaaatgatttcTATTTGCGAGAAAACTGAAATGGAATTGA
ACTTATCCAAATTGTCAGGAACTGAAAATCAACGAAATAAGACGATTGAA
AACGAGGCTGTAACAGACAACACACCGTTATTCATTGGGTCTAATATTTC
ACTAATTGAACGTATTGCACATGATTTTCCATCTGAAACATCAGTAGAGA
TTGAACAGCTTTTATTTGATTGCCCTCTTCAATGTTTTGGCCAGCTTCTT
GAAAAAGTAGAAATTGGCCAATGGGATATGAACCTTATTTTATTATTGAT
CAAATCATTTGTGACAGACGACTCGCTGTCCTTTGAGAAGATGAAACTTT
TTATATCACGAAGTGTCACATCCAAATTGAATGACCAAAAAGGATTAGTA
TCTAGAGAATTATACCAAGTCGTTTTAGATATTTTTGGTTTATGTAAACG
CGTTTCTGTTATTGCTATCGTTGGTGAAAGCCTGCTATTTGAAGATTACC
GCAATATCCATACAGATGTGATCAGTAAATTATTCTCAGATAATATTCTG
AACTCAGACGATATCAACACAATCCTTGAATATGGACTTACTCGTAAAAA
TCTTTCCCATTGGAACGAAGAATTTCTAACAACATTGGATGTTCTCATTG
CAACGAAGGCTAACTTGACCGATAATGTTAAAATGTTGTTGGTGTCTAAC
ATAGTGACAGTTGCTGACCGATTtaagaaatctttaaaactcATGAAATT
GGTGATAAGCTTTGCACAGATTCACCAGAAAGATTTTTGTAATCAATTTA
AGGACTCTATGAAAAttgttattgataaaaatgagacttttttgaaaaag
aaagcttTGAAACTTCTTTGAATTGAAATTCTCACAGTCTTTCCGCGTCT
TATTCATGTTTTGGATATTAATTTTACTCCTTTCGTGTGGATTCCCACCT
TCAGCTCCGGGTGCATGCTATACTCTCCCTGAC
Run BLAST on NCBI

transcript from alignment at scaffold_214:241748..253332+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052462 ID=TCONS_00052462|Name=TCONS_00052462|organism=Clytia hemisphaerica|type=transcript|length=11585bp|location=Sequence derived from alignment at scaffold_214:241748..253332+ (Clytia hemisphaerica)
GAAGACAAATGGATAGACAAGCCCACACTCTCTGGTCCTATTCGTAATAC
AAGGTATTTTGACAAAAAGATGGAGAATTTTACACACTTGCCTCTTTTCA
ATAACatttcttttcataaaattaTACCAAATAACAATTTAAACTGACAA
TTCAACATTCAAATACCTTCTGGTTGGTATCTTTTAATACTCAATGAAAC
AGCTAATTACATCATAAAAATGCGTATATGCTTGATTGAAACAAAAGAAG
GAAGAAGAGAAAACGAATTGAAGTTGAACAAATTTTAATCACcctttttt
gacatatttttgctctttttgaaaagtgatttttgactttaagtggtcat
aacttttgaaccgaTGGTCCAAatgtaaaaagtaataaaattaaAAGCAA
TTTTAATAAAGCAAGGTAAACCTTACAGATTGATAGCTCTAAAACGTTgc
caaaaagttgttttttttttgaaccaTCCGGTAATGACTCCAAAAAATAT
TGGTATGATCAGGTATGATTACCTGATAGTAAACCAATATCCATTCCCCT
CTAATTTATAAGTTTAAATTCATGAAACAGAAGAACCTTTTTTTAGCTGT
GACCAGTTTGACTATTAAAaaatttctattaatttttctaaaatcgatTT
TAGAACCTATGATTGTGGACTTGGAGAATGGCACTTGGTAAAGGAAGAGG
AAAAGTTGCATATGCTGACATCAAGAAAGATGATCATTCCATGGCTGGTC
CAAGGAATAATGGCTCTTTCACTCCAAGTACTACTGAGCAGGCAATGGAT
GAATACCTCAGAAATATAAACATGTATCGTAAACCAGTTGCTAAAGATGG
TTCTTGTTTGTTTCGCGTTGTAGCTGAACAGGTAAAAAGTGTTTAAGATT
TTTTATTAAAGTCAACGGCACATATTATTGTTTTCATACGGAATTAAttg
gaaaatattattttcatttttttaggtCTTCTTCACAcaatttttacaca
aaaaagttCGAACAGACTGCATTTCTTACATGAATGTCCACAGAAAGATT
TTTGAATCTGTAAGTTTAAtcctttcaattttaaatcCATTTTATCATGA
ATATTTGAATAAATTCTGATAAGAATACTTACCTAACCCAATAAAACTGC
ACAAAAATTGAAAGGTGCGCAAATTTGCAACAAATATGAATATCTCGAAA
TCtcatttcaatcttttttagaAACGAGTCCTCTAACTAATCAGGTTAAA
TAATGTCCCTGGGTTGTAAGATCTGTTAAAATAAGAACTAACAGTCATAa
aatttcatatattttttaccCTCTTTTACCTATATTTTATCATTAATGAA
CACTAATACAAATATCCCAGAAAATTACAGGATGTATGAAAATTAAAGGG
TGTATGAGTGTCCCAACTTATGAGGTGCTTGTAAATAAAAAGGCATATAA
ACTAGAAGGTGAAAATGAGAAGCACGTATTAAAAAGATGTACAAAATACA
ATGTAgcttattttgataaattttcatttttagttcaTTGAAGGCTCATT
TGAGCATCACCTGTTCAATCTTAGAAATCTTAAGGTAAGGTGAAGAATTA
tgattattatccatatagcggtcattaagtaagccattaaagattcgaac
ggcgggcggtattgaaaggtattatgactcaaatagtcatacccgcgctg
agaaaactaaggcgtcgtgcttcagagggctgaaatatcattaaccaccc
tggttatagggcgataacgtcatttgcggcccgctactcggaactttatt
gaagtcgttgcattgaagcggtgagactaaaccgacgtcagaaaaaaaca
ttttttggtcatttgcggccagcttgcaagggtactcaaaacttgttgaa
gtcattgcattgaagcgaaaagacttggctgacgctagaaaaaaacgttg
tttgaatttccgatatggataataatagtaatagcgttaagctttcgttc
gttgttgtcattaattctgcccttacagtttgattattagccctctagtg
ccaacaacgacctcaaactgaacgctattgttatattattgtGATGATTA
TGATTTCACCAGTGCTTTATTTTACAAATCCAAGATGAATGCTTTGTTAT
TTGTCTAGAGATATCACTTCCACTATCTTTATTCTGAAGTATTGCCAAGC
TTATTGTCTCATCTGTAAGCCATGATCTCTATTAGTTTGCTATGTTCTAT
GTCAGGCTTTTCTTGTCTGCtcttttgaaattgattttatCAGGGCTTTA
TATTACGAAGCCAAGATGAAAGCTTTGTTAATTGTCTAGAGATAACACTA
CCACTATCTTTAGTCTCATTCCCTTGCAACAAATGATTTCTTTATCTGTA
AGCTCTGTTCTCTATTAGTTTGCTATGTTCTATGTCAGGCTTTTCTTGTC
AGCccttttgaaattgattttatCAGGGCTTTATATTACGAAGCCAAGAT
GAAAGCTTTGTTAATTGTCTAGAGATAACACTACCACTATCTTTAGTCTC
ATTCCCTTGCAACAAATGATTTCTATATCTGTAAGCTCTGTTCTCTATTA
GTTTGCTATGTTCTATGTCAGGCTTTTCTTGTCAGCCCTTTTGAAATTGA
TTTCATCAGGGCTTTATATTACGAAGCCAAGATGAAAGCTTTGTTAATTA
TTGTCTAGAGATAACACTACCACTATCTTTAGTCTCATTCCCTTGCAACA
AATGATTTCTTTATCTGTAAGCTCTGTTCTCTATTAGTTTGCTATGTTTT
ATTCGAGGCTTTTCTTGTCTGCTCTTTTGAAATTGATTTCATCAGGGCTT
TATATTACCAAGCCAAGATGAACGCTTTGTTAATTGTCTAGAGATAACAC
TTCCACTATCTTTAGTCTCATTCCCTTGcaacaaaagatttttcttagAA
TTTTTCTGAAGTATTACaaagccaatttttttatctgtaatctctGCTCT
TTATTTCTTTGCTAACCATCAGTTCGATCGTTGGCGCAAAAAGATgaatt
atatttaaaaatagCGCGTCAAAATGTGCAACTTTGAGACTTATTATTGT
TACTACACGGAATTTCTTTTAGAGCTACATTGTCTTTCAAACATATTAAA
TAATGATATCTTCTTTTACTTTCTTAGGAATGGGGTGGTCACTCAGAAAT
ATCGGCACTTTCACTTCTCTATAAGTAAGTGCCAATTCTACGAATTTGAC
GATACTTTAAAGCTAGAAAAGGCTTTCAAAATTACCTTCGTTCCATGCTA
TTTTTACTTACTGTTCATCTAATTTAAAATACATTCTGTGTCAATGACCC
ATTCTTAAAGTACGCTGCATTTGAATATGGCCATGAAAAGTAGTATAAAC
AAATGTCCAGCTCCGCCAGAGGAGGCTTTTGAGGTTTATCACGTCATAAT
TCTTGTGATCCCAACTGTACTTTTCTAATAGATATGACTTCATTGTATAT
CAAATTGCAAATCCAACTCCACAGGATGTTACAAAAAATGGTTTCGACAA
AAAGGTGTTTATAGTGTTATattaaatgaaaacaatgaaatttttatcag
aaCTGGGTTATCCAAGGTTTACCTGGACTTATATTTTCTAGTTGGTAAAT
TtcagtattttttcaaattgactGGAATGATTTATTTATAAATGTACTGA
TTACATGACAATCTAAATGAATTTACAGTAAAaacttaatttcttttttt
ttcagattcatcTCTGCTACCTGAATAACAACCATTATGATTGTGTTTAC
CCAATCTCTTTTAAATCGAGTGCTGCTATTGCACAATGTAAGTTATATCT
CTTTTCAATTGTAATGCACTGCTGAATGCAATCAATAGAAGTAAAGTGGA
CTTGTATAAAGGAGGTTTCCAGGGGAAAATATCCTTCAATCcaaactgaa
ttttttaaacCCAGCTTTTGAATACTCATTTTAGAAATTGAATTTGGACA
GGGCAAAGTATGAGTCGCGGAACTCCTTGGTCCAGACTTTCTGGTAcagg
accaaaaaaattgagCTACCTCTAAAATTCTATACTTCTTAGCCATTGTG
TATGAGATTTTACTTGGGAATGTATTTGCTGAAGTTGATAAACGTGAAAT
GGAAGCTGATTGTACTGCTATATCTGAAGCTGAAGAAAGCCAAGACCCCT
CTGCATGGACTGAAgtaaaaactaaacaaaataaaGGTCAGTCAAACAGC
ATTTAGCACTTGTTCGTTGTATTTTTATTATGTCTTAATTTTTGCAGATC
TCTTTTCCCATAAAACAATCACTTTCTGACATCAAAAAGtaaaactcaat
ttttaaattattacaAAAAATTATCTCAAGAAGAAGCAAGTCTTAGGAAA
ATATGTAAACTAAGTTGAATTTGGTGTACATTATTAGCTAAAGTTCATCA
AGCATGCCAAAAATATGTCTCCTAGAAAAATTTCTAACTCTTTTTTAGTT
GGTTCTTATAGCATGATTTACAGGAACAAAAacataaagctgaaaatttc
tccaaactTTCTCTATACCAGCGGTCGAGGAAGTGAATTTTGTCACTTCg
cgaggtagtgaattgtgtcacttcgtagggcaccacttagatcagggcaa
attttttatattatgcccctaatagggtgtagaattggcgaaaaaaattt
gcacttcgaatctcctgcagtttttgagtgaatcgatttttagttaatcg
ataggaCTTATCGAGGGTCCCTTTACTACCGTTTTTCgaaatctgaaaat
caaatatctgaggcaaccaacggattcagcgtgaaaagtagataaagaaa
atggggttatttgttaagtttcgaccacctggtgccgagaaatggcattt
ctaaggcgaaaaatcgacgtttttggcgttttccgatgacgtcagcattt
ttctgggagcatttttagaaaaaatcattctcaaagctggatagccctga
attagtagtatggTTTGATATTtcggtttaaatattgaaaatcatcgata
ttttttgctgattcagtttttcagcataaaaattaaatatctcaagatcg
gaacatcgaaagttaacaaaccataccattttcggATACTATCAATTCAG
TGCTATCCATCTGTGGgaataattttttctgaaaatgctctcataaaaat
gctgacgtcattgccaaaaacgtcgatttttcgccctAGAAATGCCATTC
CTCGGCacgtggtcgaaacttaacaaataaccccattttctttttctact
tttcacgctgaatccgttggttgCCTCAgataatttgattttcagacttc
gaaaaaaccgttagtaaagggggggggggacccttgataaataagttcta
tcgattaactaaaattctattcactcgaaaactgcaggagatttgaaggg
caaattttttttcaattctacaccctattaggagcatactatcaaaaatt
tgccctgatctaaggggtgccctacgaaaatcatttttaaggccttttct
gaatctcggacgctggtctataCTATGCTTATGACTTAATGATCCCACTG
AATGAAATTCTGTTTTCGACGATTTTTCTTTCAgagtcaaattttgaaaa
tattatttattttcaggCAACATCATGTATGTCATTTAaaagagattttt
aaattggTATAGCCAATTTAGCCACCTGAAGATAATTAAGTTGGAGTCAA
TTTTTGATCAATATATAGCCAAGCCAAACTTGATCAAAAAGTGATGTTCC
ACCAAACTAAGGTCAGCAAGATGAGCCATCAGCATTATATAAGAAAGTTA
CAAACATCATCAACTgagctatttttcaaaaaaggaattAGCTTTTTTAA
TATACCGTTTTTGTAAtgaaatttttaggaaaaatggTCGATGGTAAACA
ATCGGACAATCCTTGGGAAAATTTGATTTCGGTCATTCCCGAATCAAACA
AAAATCCACGAGTTATGCGTTCCTTGACGGCTTCTTTGGACCCTTCAGTA
TACCGAAACATTGAGCTAGATGTATGGGAAAACACTCGTTCTgaacaaca
aaaatttgatcAAGTCGTTGCCGCTGCACATCAGTTCAAGCCAGGGGATG
TCTGTATAGCCACTATCCGTGAATCGAAAGATCACAGTAAACAAGTGATT
GTTCGAGTTCAGAAAGTGGGAGAGAAGTGTATCGTTGTTCCCGAGGATAA
GGATGTCCAATATTATGTTCATTTAGACGATCTCCAACCGATGGTGAACG
GAGAGCACGACTACCGATCGCTACCCGGCTACTATAATAAATACGAAAAT
GAACAAGAATTTCAATCGCAAAAGAGACGGAAATATCGTAAAGGTCGTGA
AGAGGAACGTAAAGTaaatgaatttcaaaacaatcagCAAAATAGGTCAC
GTGGTTCTGCACCAGTTGAAAAAGACACTAACAGAGGAGGAGGTCGTAAA
AATAACCAACGTAAAGAAAAATCAGTTTCGCCAACCAAAAATCAACAGCG
AGAGAATACTGTGCctaagaaaacagaaaagacTGAAAATGAACTGGCAC
CTGTAGTCAACGGTAGTGCAACGACTGAAGAATCTGTAACCAAAGTCGCC
AAACCTGCGGAAACAGCCGCCGCTTTTTGGGGCCGTATGCGGAGTAATCC
TGCACAAGAACAACCACCCAACGATGTCACCACACCCACTACCAAAACAA
CTGACGAATtaattaagaaaaataatttaacccCAACAAATGCTAACAGT
GATAAACTTGAAAGCTCCGAACCCACTGACAGGGCACCTGATCCCATACA
GAtagtcaaaaataagaaaaaaactaaCACTGCTCCAATAGCTGATGCAT
CAAAACAAGACACTGCTCAAATAGATATTAGAAATAATCAGAAATCACCT
GAAACTACCACTGCAAACAGTCAACCCGTGTCATCACCTCCTAAAGACAT
TAAAAAACTTAGTCTCACTTCCCAAGCTAGTGCTAAAGTCAAGAAAGTtc
gagaaaatattttgatgagtAGTGCTAAAATTGAAAGTGGTTCCATTACA
TCTCCTTCTAAAAGCGAATTAAAAGCTTCCCCAGTGAAAGAGGAGGTTCC
TAAGAAAGTCACTGGGGAAGATTCTATCGGTGTTACCATGGCAAAAGAGA
TAAAACAAGAGGCTCCCTCGCCAATAATACAAAAGAGAGATGAGATTGAA
TTAGAAAAGCCACCAACTGTATCTCCCCCTACAATTCACAAGCACACTGA
CTCCACTAGTGGTTGTTTAGAAACAAAAGTAGAACAACTTGACTTGAATA
AGAACACACAACCCAATATTATAGTGAGTCCGGAATCACAGCGAAGCAGC
GTCGAAATGAGCGAAAATCGTCCTACAAGACCGCCCAAACTTggtaaagt
caaaaagaaagttAGCTTCGGATCGACAACTGAGATAATTGAGACAATAC
ATAATATACCTTCACTTATCCCACAACCAGATGAAATCCAACAAATGAGC
CCGCAACAAGCGCCTATCCCACCACAAAAACAAACGCCCGTCATACCCAG
TGGCGGGGGCGCTGGTGGTGAGCGTGGTAAAATTCACATCCCTCGTGATC
ATATCGAGAAACATATGAACTaccaacagcaacaacaacaacaaagccAT
AATCAGATAAACATGGAACTTCATCATCCAACACAACAAAATTATCAACC
AACAACAACCGGCATCAACCAACAACAACAGCACATGACGCCTGAATCTC
TACAACAACAATACATTAGAATACTGCAATCACAACAACAATCACCTTTT
GTCTCCCATAATACTGCTTCAAATAACATTCAAACCTTCTATCACCCAGC
TGCAACACAAGCCAATTTCTACCCCGTCATCTATCGACAAGGGAATAATG
TTGATATGCGAACCACACATCTTCAATTGTCTCAAGATCCAGAGGCTAAA
GATCTACCCGAAGGTATACTTAGATTCTTCCCTTCTTTTTGTATTATGTC
CTATATCCCGGTGTGACTTCTaaggggctagagaggaatcttcaaccttt
ctctagcaagaaaaagtgaacttATTTGCAATGCATTtaaaatgacggat
tgaatctaacactttctttgtttttgctcgacgtatttttcaaaatctgg
cgCTGGACTTAACTTCAATATAGCGTTGGTGTGAAAACCACATGGGTCAC
GcgtcttggatgggaaataagtggcatcggaaaaaataagtaaaattaAT
GCACTCCACGTCCTTATTCTTCAGTTTCAGGCTGACATTTTTGCTTGGTA
ATTGCTCGCACTGAAAGCAagaatttattgatttttctttattcttgtTT
TAGACCCTCAAGTTGTGCAGTACTTTTACAACCTTGGTGTACAGGTTAGT
TGGACCTTTTAAGCTCCACACAGCTTGGATGAAATGCTTTCCGATCTAGC
CATACTTAAATGAGTTAGTAATTGGTAGTCTTTCCAATGCTGAAAATCGA
ATTATGTTGTAATTTAGTTTTCCAGAATCTTTTATCCAAGTTGTTACCCT
CTTTTTGAAAAACCTGGAAAATATTTATTGCTACTATATTAATTAAACTC
GTTTTTTCACTAGTACTGTATGATGATGAGCCCTCAGAATTTCCATCAAC
AAGTGAACCAAGCAGGAATTCTACCTTTGCCAGTGGCTAATACTCCAATA
CAACAAGTACCTGTCCATCAACTGGTTCTCAATAATTCTAGCGAAAATTC
CGTGAGTTTTTCTCCATAATCCTTTTCAGTATAAGTGTCGAAAGTTAGCC
TGGACTGAGTAAATACATCATTACCTTTCTGCAACTTTTACTTGCGTTGT
AAAGTCGAAATACATGATGGTAAAGAAATTAATCAAATTATGATTTTGAT
GACTTATCCTCGTCACCTTTCTCTTTAGCGAAACACAACGAACGAGTTAT
ACGTGGCTAATTCACCTCAACAACAAACGGAAACAAGTTTGATGGACATG
CAACAACACCACCCTGTTGCACTGCCCTCACAAGCGCAACAAATTGTTAC
ACCTGCTTCTCTCCAGACGCGCCTTCAACATCATCAACAGCCTCAACAAG
CTGCGACAAATCTCGCGACCGGTTTCCAGCACCAACATCAACCACGCCAC
CCACGACCTAATCTTTCCGATTACGAAACGCCCCCACGCCATCGTAGAGG
CCTGATTTCGCCTCATTCTGGCGCCCTCTCCCAGCACAATGTTGGTCTCA
TTAATTCAAATTTGCACCATCGGTCCAACAACCAAAGACACATCTCACAA
CGTCACAATTTTAACGGTGGGCGTGGTATTATTGGTCAAGGTCCTAAGCC
AATGCGTATTGATCATATACGACCTTcgaataatttttgatgagattTTT
CTGTCGCCTTagaattttgtttcttgttttctgttttgttatagattttt
ttcattttttatcattttagaaTTGAGTGCTTACAAGTTTGGTTGACGAg
accaacattttttaagcaTGAATATCTTCCTtccttttgttgatttttat
gaGAGAGGAATTTTCAATTCTTCtatcattttttacaaacatttagaaaa
agaaatatgtttTTTAATATTCATAATTCCTTGCATTTTTACtctagaat
tttatttttctcattacaATAAATTACAATTTCTCAAATACCTTCATCTA
AGACTCGAGATAAGATTCTGACATAGTTCACTcagaatacacgctttttt
ataagaataacttctataagaatgtcagggtgagatttcagagttagaac
aaaaggcctattgtttagaacaatagaaaaataagaataatgctcaccct
cagccaaagtacactattcttataaaagaaaaagcgtgtagatgATTATA
ATTTTGACTTTGTAATTCATTGTACCTTCTTTTCAGCttctaaaaaaata
gaaataatgtCACATGATAAATTAATTTTGGATAAAGTTTTGAGCAAAGA
GATGCAACATTTAGTTTACCTATTATCGTCGCCGAAACTCCCTCTCCAAA
GGGCAGAATCATATTTTAAAGTATCACGTCAACGAAATATGACTCATGCA
AAAGCTATTGGAAAATGTAACCTCGAAACTCTTTTTAGCATCTTGACAAA
GTCTGTAATGTTACCAGAGCTTGACTTGAATGGACATTTTAAAGAAGCAC
CAGTGTTTTTATCGCTATCTTCACCATTGAAGCAAAACATTATCTTGTTT
GCACGAAGGTTCAAATATGACTTTGATTATGATTTATGGAAAGAGTTTTT
ACAacaaaactttgcatttttggATACCTGGTGTAAAGTTATACTCGAGG
ATGAAATTCACCCAGATTCAACTTTTTGCTGTCTCTCAAATCAAACTCTT
ATTGACTTACGAGAATGGCATGACCTGAAGTTTCCTAATGTCCAACAATT
TCACAAGACAGAAAAGGGCCGGCGAAAAAGTGACGTATCCCCACCGCCCA
AAAAACGTCAAAGGTGTCAAAGTCCGGATGACTTCTTCATAGATGACGAT
AtcgatgaaaatgaaatgatttcTATTTGCGAGAAAACTGAAATGGAATT
GAACTTATCCAAATTGTCAGGAACTGAAAATCAACGAAATAAGACGATTG
AAAACGAGGCTGTAACAGACAACACACCGTTATTCATTGGGTCTAATATT
TCACTAATTGAACGTATTGCACATGATTTTCCATCTGAAACATCAGTAGA
GATTGAACAGCTTTTATTTGATTGCCCTCTTCAATGTTTTGGCCAGCTTC
TTGAAAAAGTAGAAATTGGCCAATGGGATATGAACCTTATTTTATTATTG
ATCAAATCATTTGTGACAGACGACTCGCTGTCCTTTGAGAAGATGAAACT
TTTTATATCACGAAGTGTCACATCCAAATTGAATGACCAAAAAGGATTAG
TATCTAGAGAATTATACCAAGTCGTTTTAGATATTTTTGGTTTATGTAAA
CGCGTTTCTGTTATTGCTATCGTTGGTGAAAGCCTGCTATTTGAAGATTA
CCGCAATATCCATACAGATGTGATCAGTAAATTATTCTCAGATAATATTC
TGAACTCAGACGATATCAACACAATCCTTGAATATGGACTTACTCGTAAA
AATCTTTCCCATTGGAACGAAGAATTTCTAACAACATTGGATGTTCTCAT
TGCAACGAAGGCTAACTTGACCGATAATGTTAAAATGTTGTTGGTGTCTA
ACATAGTGACAGTTGCTGACCGATTtaagaaatctttaaaactcATGAAA
TTGGTGATAAGCTTTGCACAGATTCACCAGAAAGATTTTTGTAATCAATT
TAAGGACTCTATGAAAAttgttattgataaaaatgagacttttttgaaaa
agaaagcttTGAAACTTCTTTGAATTGAAATTCTCACAGTCTTTCCGCGT
CTTATTCATGTTTTGGATATTAATTTTACTCCTTTCGTGTGGATTCCCAC
CTTCAGCTCCGGGTGCATGCTATACTCTCCCTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033173XLOC_033173Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052462-exon-scaffold_214-1491911889:241748..241800TCONS_00052462-exon-scaffold_214-1491911889:241748..241800Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1510915933:241748..241800TCONS_00052462-exon-scaffold_214-1510915933:241748..241800Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1575043694:241748..241800TCONS_00052462-exon-scaffold_214-1575043694:241748..241800Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1491911889:242401..242628TCONS_00052462-exon-scaffold_214-1491911889:242401..242628Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1510915933:242401..242628TCONS_00052462-exon-scaffold_214-1510915933:242401..242628Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1575043694:242401..242628TCONS_00052462-exon-scaffold_214-1575043694:242401..242628Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1491911889:242723..242806TCONS_00052462-exon-scaffold_214-1491911889:242723..242806Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1510915933:242723..242806TCONS_00052462-exon-scaffold_214-1510915933:242723..242806Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1575043694:242723..242806TCONS_00052462-exon-scaffold_214-1575043694:242723..242806Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1491911889:243281..243331TCONS_00052462-exon-scaffold_214-1491911889:243281..243331Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1510915933:243281..243331TCONS_00052462-exon-scaffold_214-1510915933:243281..243331Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1575043694:243281..243331TCONS_00052462-exon-scaffold_214-1575043694:243281..243331Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1491911889:244925..244971TCONS_00052462-exon-scaffold_214-1491911889:244925..244971Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1510915933:244925..244971TCONS_00052462-exon-scaffold_214-1510915933:244925..244971Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1575043694:244925..244971TCONS_00052462-exon-scaffold_214-1575043694:244925..244971Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1491911889:245229..245301TCONS_00052462-exon-scaffold_214-1491911889:245229..245301Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1510915933:245229..245301TCONS_00052462-exon-scaffold_214-1510915933:245229..245301Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1575043694:245229..245301TCONS_00052462-exon-scaffold_214-1575043694:245229..245301Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1491911889:245503..245584TCONS_00052462-exon-scaffold_214-1491911889:245503..245584Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1510915933:245503..245584TCONS_00052462-exon-scaffold_214-1510915933:245503..245584Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1575043694:245503..245584TCONS_00052462-exon-scaffold_214-1575043694:245503..245584Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1491911889:245840..245983TCONS_00052462-exon-scaffold_214-1491911889:245840..245983Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1510915933:245840..245983TCONS_00052462-exon-scaffold_214-1510915933:245840..245983Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1575043694:245840..245983TCONS_00052462-exon-scaffold_214-1575043694:245840..245983Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1491911889:247676..249760TCONS_00052462-exon-scaffold_214-1491911889:247676..249760Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1510915933:247676..249760TCONS_00052462-exon-scaffold_214-1510915933:247676..249760Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1575043694:247676..249760TCONS_00052462-exon-scaffold_214-1575043694:247676..249760Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1491911889:250151..250191TCONS_00052462-exon-scaffold_214-1491911889:250151..250191Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1510915933:250151..250191TCONS_00052462-exon-scaffold_214-1510915933:250151..250191Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1575043694:250151..250191TCONS_00052462-exon-scaffold_214-1575043694:250151..250191Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1491911889:250411..250548TCONS_00052462-exon-scaffold_214-1491911889:250411..250548Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1510915933:250411..250548TCONS_00052462-exon-scaffold_214-1510915933:250411..250548Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1575043694:250411..250548TCONS_00052462-exon-scaffold_214-1575043694:250411..250548Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1491911889:250726..253332TCONS_00052462-exon-scaffold_214-1491911889:250726..253332Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1510915933:250726..253332TCONS_00052462-exon-scaffold_214-1510915933:250726..253332Clytia hemisphaericaexon
TCONS_00052462-exon-scaffold_214-1575043694:250726..253332TCONS_00052462-exon-scaffold_214-1575043694:250726..253332Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_214supercontigscaffold_214:241748..253332 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.21762	6.23189	7.16306	7.40934	1.60901	0.000242823	4.52376	0.00448325	4.00871	4.94631	2.77542	4.70436	8.866	6.92195	6.398	6.79797	6.24735	6.86613	4.77251	1.28224	4.52357	7.01721	10.4971	10.8602	0.00583898	0.00449084	4.81492	5.35026	7.12243	7.81722
Blast
[Close]
BLAST of TCONS_00052462 vs. Swiss-Prot (Human)
Match: OTUD4 (OTU domain-containing protein 4 OS=Homo sapiens GN=OTUD4 PE=1 SV=4)

HSP 1 Score: 229.565 bits (584), Expect = 6.742e-61
Identity = 132/328 (40.24%), Postives = 187/328 (57.01%), Query Frame = 3 
Query:  132 DHSMAGPRNNGSFTPSTTEQAMDEYLRNINMYRKPVAKDGSCLFRVVAEQVFFTQFLHKKVRTDCISYMNVHRKIFESFIEGSFEHHLFNLRNLKEWGGHSEISALSLLYKYDFIVYQIANPTPQDVTKNGFDKKIHLCYLNNNHYDCVYPISFKSSAAIAQSIVYEILLGNVF-AEVDKREMEADCTAI-----SEAEESQDPSAWTEVKTKQ---NKGKMVDGKQSDNPWENLISVIPESNKNPRVMRSLTASLDPSVYRNIELDVWENTRSEQQKFDQVVAAAHQFKPGDVCIATIRESKD---------HSKQVIVRVQKVGEK 1061
            D   AGPR + +         MD YLR + +YRK VAKDGSCLFR VAEQV  +Q  H +VR  CI Y+  +R+ FE+FIEGSFE +L  L N +EW G  EISALSL+Y+ DFI+Y+  N +P  VT+N F +K+ LC+ N NHYD VYPI +K S+A+ QS++YE+L   VF  +V K  ME D   +     SE  +S+D S  ++        N  K + G +      N  S+         + R +  SL+P+VYRN+E ++W  ++  QQK D  +AA  Q++ GD C   +  +           HS+   V V+++G+K
Sbjct:   12 DQGGAGPREDAT--------PMDAYLRKLGLYRKLVAKDGSCLFRAVAEQVLHSQSRHVEVRMACIHYLRENREKFEAFIEGSFEEYLKRLENPQEWVGQVEISALSLMYRKDFIIYREPNVSPSQVTENNFPEKVLLCFSNGNHYDIVYPIKYKESSAMCQSLLYELLYEKVFKTDVSKIVMELDTLEVADEDNSEISDSEDDSCKSKTAAAAADVNGFKPLSGNEQLKNNGNSTSL--------PLSRKVLKSLNPAVYRNVEYEIWLKSKQAQQKRDYSIAAGLQYEVGDKCQVRLDHNGKFLNADVQGIHSENGPVLVEELGKK 323
The following BLAST results are available for this feature:
BLAST of TCONS_00052462 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
OTUD46.742e-6140.24OTU domain-containing protein 4 OS=Homo sapiens GN... [more]
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