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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052463 ID=TCONS_00052463|Name=TCONS_00052463|organism=Clytia hemisphaerica|type=transcript|length=1443bp
tcagcacaaaaaataaaaacagttgaataaaaaacaatacaATGAAAGTC
TTAATCACAGGAGCGTCAGGTTTACTTGGAAGAGCAATCAAGAAAGAATT
GGAAGCTGTCAATGGATGGAAAATTCTGGGTCTTGGTTTTACACGACTCA
ATGGTGGACTGAAGAAAGTTGATCTGACTGATTCTGATGAGCTAGAAAAA
GTTATGAACGATTTTCAACCAGATGTCGTGGTTCACTCAGCGGCCGAAAG
ACGTCCTGACGTGGTCGGGAACAAAGAGACTGAAACAGTCGCTCTCAACA
TCAAAGCTACTGAGCATATTGCAAAACTAGCTTCGAAACTGGGTAGCTTT
CTCATCTACATCAGTACTGATTACGTCTTTGATGGTTCAGCTCCTCCATA
CACGCCTAATAGTAAACCAAACCCTTTGAATCGTTATGGACAGACCAAGT
TTGAAGGTGAAAAAGTTACGGCATCGAATTGTGAACGCCATGCTATCTTA
AGAGTACCTATCCTATATGGTGAAGTTGAAAGGGTCAATGAAAGTGCTGT
TACCGGGCTGCTTGTTAATCTGAAGGATACAAGTACTNATTGTGAACGCC
ATGCTATCTTAAGAGTACCTATCCTATATGGTGAAGTTGAAAGGGTTAAT
GAAAGTGCTGTTACCGGGCTGCTTGTTAATCTGAAGGATACAAGTACTCC
ATCCAAGATTTCTAATTACGAATTGCGATACCCAACGTTTACTGAAGACG
TTGCAGTTGTTTGTCGTCAAATGATTCAGCATTCCCAAACTGCCCCTACA
TTCAAAGGGATTTTCCACTGGCAAGGTAATGAGCAACTCACCAAATATCA
AATGGTTAAAATCATGTCCAAAGTATTCAATCTATCTATGGATCATTTGG
AACCTGTAAATGGACCCACATCGAGTAGCACGCCTCGACCTTATCATTGT
CAACTCGATTGTTCTGGTCTTGAAAAACTGAATATTGGTGCAAGAACTTC
ATTTGAAGGTGCCATCAAAAGAGTTTTGCAGAAATTTGTTTGATCGTGTA
AGTTGatcattttttcatgttttatactttttttttatcaattttggatt
taattttctttgtatttgaaTATAATCGGGACACTATCAGCTACGTAACC
TTTACATCGTTTTTGtcgcttttttcaaaatatttataagtttcatttcg
tgatattTGTGCGACAAAGATTCTCGATAAGAAGACAATATTTGGGAGGG
GTAGATTTAACTGAAGTGCAGAATGTATGGTTAGTTTTGAATTATGTggt
attttctttttgtttgtttcaatGTTAAAGTAACTTAGTGAGTAGGTTGG
GGTAATCAAAAAACGCGAAGTTTGAGTAATTTACTTCAACCAAAGGTAAT
TCACATTTGAAGGTAGGCGCCTAAAGCGAAGCGTAATCTAATG Run BLAST on NCBI protein sequence of TCONS_00052463-protein >TCONS_00052463-protein ID=TCONS_00052463-protein|Name=TCONS_00052463-protein|organism=Clytia hemisphaerica|type=polypeptide|length=333bp
MKVLITGASGLLGRAIKKELEAVNGWKILGLGFTRLNGGLKKVDLTDSDE
LEKVMNDFQPDVVVHSAAERRPDVVGNKETETVALNIKATEHIAKLASKL
GSFLIYISTDYVFDGSAPPYTPNSKPNPLNRYGQTKFEGEKVTASNCERH
AILRVPILYGEVERVNESAVTGLLVNLKDTSTXCERHAILRVPILYGEVE
RVNESAVTGLLVNLKDTSTPSKISNYELRYPTFTEDVAVVCRQMIQHSQT
APTFKGIFHWQGNEQLTKYQMVKIMSKVFNLSMDHLEPVNGPTSSSTPRP
YHCQLDCSGLEKLNIGARTSFEGAIKRVLQKFV Run BLAST on NCBI transcript from alignment at scaffold_214:253449..255892+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052463 ID=TCONS_00052463|Name=TCONS_00052463|organism=Clytia hemisphaerica|type=transcript|length=2444bp|location=Sequence derived from alignment at scaffold_214:253449..255892+ (Clytia hemisphaerica)
tcagcacaaaaaataaaaacagttgaataaaaaacaatacaATGAAAGTC
TTAATCACAGGAGCGTCAGGTTTACTTGGAAGAGCAATCAAGAAAGAATT
GGAAGCTGTCAATGGATGGAAAATTCTGGGTCTTGGTTTTACACGACTCA
ATGGTGGACTGAAGAAAGTTGATCTGACTGATTCTGATGAGCTAGAAAAA
GTTATGAACGATTTTCAACCAGATGTCGTGGTTCACTCAGCGGCCGAAAG
ACGTCCTGACGTGGTCGGGAACAAAGAGACTGAAACAGTCGCTCTCAACA
TCAAAGCTACTGAGCATATTGCAAAACTAGCTTCGAAACTGGGTAGCTTT
CTCATCTACATCAGTACTGATTACGTCTTTGATGGTTCAGCTCCTCCATA
CACGCCTAATAGTAAACCAAACCCTTTGAATCGTTATGGACAGACCAAGT
TTGAAGGTGAAAAAGTTACGGCATCGAATTGTGAACGCCATGCTATCTTA
AGAGTACCTATCCTATATGGTGAAGTTGAAAGGGTCAATGAAAGTGCTGT
TACCGGTATggattttaatttaatgttaatcagatggtttgagattgACA
TGTAGATTCCTTCTATTCTCCTgagcaaaacctcaaaatatcaTTGCCTA
TATTTTCCAAAGACGAGGTATTTAGATTACAAGTTTTTTagtaagaaaac
aatagaatttcaacgttaAAACTGTGCAAGAACCCGTTTTCAGTAATTTC
AAACtgtgatatctcgactttggagaGTAGTTGGACAAATATACTTATAT
TTTACTTGGAGCACAAAAGGTTTCTGCAGACCAAATATCTCAaatcatct
gattatccctttactGAGGATTGAAACGTTTCCAAAATTTGTATAACTTC
TCTTCATTTTCCCGCTCGACATTTTTTCGACTAGActtcaaatgtttttt
ctcGAAACAACAGGACCAAACACTGTTTATTTAAGTCTCGATCTTGCTAC
TTTCGTAGTCGAAGAGTTTATGTTGAAGGGAAATGAACATTTCTTTTAAG
GGCTGCTTGTTAATCTGAAGGATACAAGTACTNATTGTGAACGCCATGCT
ATCTTAAGAGTACCTATCCTATATGGTGAAGTTGAAAGGGTTAATGAAAG
TGCTGTTACCGGTATGGATTTTAATTTAATGTGTTAACGAGgttaatcag
atggtttgagattgACATGTAGATTCCTTCTATTCTCCTgagcaaaacct
caaaatatcaTTGCCTATATTTTCCAAAGACGAGGTATTTAGATTACAAG
TTTTTTagtaagaaaacaatagaatttcaacgttaAAACTGTGCAAGAAC
CCGTTTTCAGTAATTTCAAACtgtgatatctcgactttggagaGTAGTTG
GACAAATATACTTATATTTTACTTGGAGCACAAAAGGTTTCTGCAGACCA
AATATCTCAaatcatctgattatccctttactGAGGATTGAAACGTTTCC
AAAATTTGTATAACTTCTCTTCATTTTCCCGCTCGACATTTTTTCGACTA
GActtcaaatgttttttctcGAAACAACAGGACCAAACACTGTTTATTTA
AGTCTCAATCTTGCTACTTTCGTAGTCGAAGAGTTTATGTTGAAGGGAAA
TGAACATTTCTTTTAAGGGCTGCTTGTTAATCTGAAGGATACAAGTACTC
CATCCAAGATTTCTAATTACGAATTGCGATACCCAACGTTTACTGAAGAC
GTTGCAGTTGTTTGTCGTCAAATGATTCAGCATTCCCAAACTGCCCCTAC
ATTCAAAGGGATTTTCCACTGGCAAGGTAATGAGCAACTCACCAAATATC
AAATGGTTAAAATCATGTCCAAAGTATTCAATCTATCTATGGATCATTTG
GAACCTGTAAATGGACCCACATCGAGTAGCACGCCTCGACCTTATCATTG
TCAACTCGATTGTTCTGGTCTTGAAAAACTGAATATTGGTGCAAGAACTT
CATTTGAAGGTGCCATCAAAAGAGTTTTGCAGAAATTTGTTTGATCGTGT
AAGTTGatcattttttcatgttttatactttttttttatcaattttggat
ttaattttctttgtatttgaaTATAATCGGGACACTATCAGCTACGTAAC
CTTTACATCGTTTTTGtcgcttttttcaaaatatttataagtttcatttc
gtgatattTGTGCGACAAAGATTCTCGATAAGAAGACAATATTTGGGAGG
GGTAGATTTAACTGAAGTGCAGAATGTATGGTTAGTTTTGAATTATGTgg
tattttctttttgtttgtttcaatGTTAAAGTAACTTAGTGAGTAGGTTG
GGGTAATCAAAAAACGCGAAGTTTGAGTAATTTACTTCAACCAAAGGTAA
TTCACATTTGAAGGTAGGCGCCTAAAGCGAAGCGTAATCTAATG Coding sequence (CDS) from alignment at scaffold_214:253449..255892+ >TCONS_00052463 ID=TCONS_00052463|Name=TCONS_00052463|organism=Clytia hemisphaerica|type=CDS|length=3006bp|location=Sequence derived from alignment at scaffold_214:253449..255892+ (Clytia hemisphaerica)
ATGAAAGTCTTAATCACAGGAGCGTCAGGTTTACTTGGAAGAGCAATCAA
GAAAGAATTGGAAGCTGTCAATGGATGGAAAATTCTGGGTCTTGGTTTTA
CACGACTCAATGGTGGACTGAAGAAAGTTGATCTGACTGATTCTGATGAG
CTAGAAAAAGTTATGAACGATTTTCAACCAGATGTCGTGGTTCACTCAGC
GGCCGAAAGACGTCCTGACGTGGTCGGGAACAAAGAGACTGAAACAGTCG
CTCTCAACATCAAAGCTACTGAGCATATTGCAAAACTAGCTTCGAAACTG
GGTAGCTTTCTCATCTACATCAGTACTGATTACGTCTTTGATGGTTCAGC
TCCTCCATACACGCCTAATAGTAAACCAAACCCTTTGAATCGTTATGGAC
AGACCAAGTTTGAAGGTGAAAAAGTTACGGCATCGAATTGTGAACGCCAT
GCTATCTTAAGAGTACCTATCCTATATGGTGAAGTTGAAAGGGTCAATGA
AAGTGCTGTTACCGGGCTGCTTGTTAATCTGAAGGATACAAGTACTNATT
GTGAACGCCATGCTATCTTAAGAGTACCTATCCTATATGGTGAAGTTGAA
AGGGTTAATGAAAGTGCTGTTACCGGGCTGCTTGTTAATCTGAAGGATAC
AAGTACTCCATCCAAGATTTCTAATTACGAATTGCGATACCCAACGTTTA
CTGAAGACGTTGCAGTTGTTTGTCGTCAAATGATTCAGCATTCCCAAACT
GCCCCTACATTCAAAGGGATTTTCCACTGGCAAGGTAATGAGCAACTCAC
CAAATATCAAATGGTTAAAATCATGTCCAAAGTATTCAATCTATCTATGG
ATCATTTGGAACCTGTAAATGGACCCACATCGAGTAGCACGCCTCGACCT
TATCATTGTCAACTCGATTGTTCTGGTCTTGAAAAACTGAATATTGGTGC
AAGAACTTCATTTGAAGGTGCCATCAAAAGAGTTTTGCAGAAATTTGTTT
GAATGAAAGTCTTAATCACAGGAGCGTCAGGTTTACTTGGAAGAGCAATC
AAGAAAGAATTGGAAGCTGTCAATGGATGGAAAATTCTGGGTCTTGGTTT
TACACGACTCAATGGTGGACTGAAGAAAGTTGATCTGACTGATTCTGATG
AGCTAGAAAAAGTTATGAACGATTTTCAACCAGATGTCGTGGTTCACTCA
GCGGCCGAAAGACGTCCTGACGTGGTCGGGAACAAAGAGACTGAAACAGT
CGCTCTCAACATCAAAGCTACTGAGCATATTGCAAAACTAGCTTCGAAAC
TGGGTAGCTTTCTCATCTACATCAGTACTGATTACGTCTTTGATGGTTCA
GCTCCTCCATACACGCCTAATAGTAAACCAAACCCTTTGAATCGTTATGG
ACAGACCAAGTTTGAAGGTGAAAAAGTTACGGCATCGAATTGTGAACGCC
ATGCTATCTTAAGAGTACCTATCCTATATGGTGAAGTTGAAAGGGTCAAT
GAAAGTGCTGTTACCGGGCTGCTTGTTAATCTGAAGGATACAAGTACTNA
TTGTGAACGCCATGCTATCTTAAGAGTACCTATCCTATATGGTGAAGTTG
AAAGGGTTAATGAAAGTGCTGTTACCGGGCTGCTTGTTAATCTGAAGGAT
ACAAGTACTCCATCCAAGATTTCTAATTACGAATTGCGATACCCAACGTT
TACTGAAGACGTTGCAGTTGTTTGTCGTCAAATGATTCAGCATTCCCAAA
CTGCCCCTACATTCAAAGGGATTTTCCACTGGCAAGGTAATGAGCAACTC
ACCAAATATCAAATGGTTAAAATCATGTCCAAAGTATTCAATCTATCTAT
GGATCATTTGGAACCTGTAAATGGACCCACATCGAGTAGCACGCCTCGAC
CTTATCATTGTCAACTCGATTGTTCTGGTCTTGAAAAACTGAATATTGGT
GCAAGAACTTCATTTGAAGGTGCCATCAAAAGAGTTTTGCAGAAATTTGT
TTGAATGAAAGTCTTAATCACAGGAGCGTCAGGTTTACTTGGAAGAGCAA
TCAAGAAAGAATTGGAAGCTGTCAATGGATGGAAAATTCTGGGTCTTGGT
TTTACACGACTCAATGGTGGACTGAAGAAAGTTGATCTGACTGATTCTGA
TGAGCTAGAAAAAGTTATGAACGATTTTCAACCAGATGTCGTGGTTCACT
CAGCGGCCGAAAGACGTCCTGACGTGGTCGGGAACAAAGAGACTGAAACA
GTCGCTCTCAACATCAAAGCTACTGAGCATATTGCAAAACTAGCTTCGAA
ACTGGGTAGCTTTCTCATCTACATCAGTACTGATTACGTCTTTGATGGTT
CAGCTCCTCCATACACGCCTAATAGTAAACCAAACCCTTTGAATCGTTAT
GGACAGACCAAGTTTGAAGGTGAAAAAGTTACGGCATCGAATTGTGAACG
CCATGCTATCTTAAGAGTACCTATCCTATATGGTGAAGTTGAAAGGGTCA
ATGAAAGTGCTGTTACCGGGCTGCTTGTTAATCTGAAGGATACAAGTACT
NATTGTGAACGCCATGCTATCTTAAGAGTACCTATCCTATATGGTGAAGT
TGAAAGGGTTAATGAAAGTGCTGTTACCGGGCTGCTTGTTAATCTGAAGG
ATACAAGTACTCCATCCAAGATTTCTAATTACGAATTGCGATACCCAACG
TTTACTGAAGACGTTGCAGTTGTTTGTCGTCAAATGATTCAGCATTCCCA
AACTGCCCCTACATTCAAAGGGATTTTCCACTGGCAAGGTAATGAGCAAC
TCACCAAATATCAAATGGTTAAAATCATGTCCAAAGTATTCAATCTATCT
ATGGATCATTTGGAACCTGTAAATGGACCCACATCGAGTAGCACGCCTCG
ACCTTATCATTGTCAACTCGATTGTTCTGGTCTTGAAAAACTGAATATTG
GTGCAAGAACTTCATTTGAAGGTGCCATCAAAAGAGTTTTGCAGAAATTT
GTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00052463-exon-scaffold_214-1491911889:253449..254003 | TCONS_00052463-exon-scaffold_214-1491911889:253449..254003 | Clytia hemisphaerica | exon |
| TCONS_00052463-exon-scaffold_214-1510915933:253449..254003 | TCONS_00052463-exon-scaffold_214-1510915933:253449..254003 | Clytia hemisphaerica | exon |
| TCONS_00052463-exon-scaffold_214-1575043694:253449..254003 | TCONS_00052463-exon-scaffold_214-1575043694:253449..254003 | Clytia hemisphaerica | exon |
| TCONS_00052463-exon-scaffold_214-1491911889:254499..254609 | TCONS_00052463-exon-scaffold_214-1491911889:254499..254609 | Clytia hemisphaerica | exon |
| TCONS_00052463-exon-scaffold_214-1510915933:254499..254609 | TCONS_00052463-exon-scaffold_214-1510915933:254499..254609 | Clytia hemisphaerica | exon |
| TCONS_00052463-exon-scaffold_214-1575043694:254499..254609 | TCONS_00052463-exon-scaffold_214-1575043694:254499..254609 | Clytia hemisphaerica | exon |
| TCONS_00052463-exon-scaffold_214-1491911889:255116..255892 | TCONS_00052463-exon-scaffold_214-1491911889:255116..255892 | Clytia hemisphaerica | exon |
| TCONS_00052463-exon-scaffold_214-1510915933:255116..255892 | TCONS_00052463-exon-scaffold_214-1510915933:255116..255892 | Clytia hemisphaerica | exon |
| TCONS_00052463-exon-scaffold_214-1575043694:255116..255892 | TCONS_00052463-exon-scaffold_214-1575043694:255116..255892 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_214 | supercontig | scaffold_214:253449..255892 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00052463 vs. Swiss-Prot (Human)
Match: MAT2B (Methionine adenosyltransferase 2 subunit beta OS=Homo sapiens GN=MAT2B PE=1 SV=1) HSP 1 Score: 279.256 bits (713), Expect = 4.273e-89 Identity = 143/331 (43.20%), Postives = 195/331 (58.91%), Query Frame = 3
Query: 48 VLITGASGLLGRAIKKELEAVNGWKILGLGFTRLNGGLKKVDLTDSDELEKVMNDFQPDVVVHSAAERRPDVVGNKETETVALNIKATEHIAKLASKLGSFLIYISTDYVFDGSAPPYTPNSKPNPLNRYGQTKFEGEKVTASNCERHAILRVPILYGEVERVNESAVTGLLVNLKDTSTXCERHAILRVPILYGEVERVNESAVTGLLVNLKDTSTPSKISNYELRYPTFTEDVAVVCRQMIQHSQTAPTFKGIFHWQGNEQLTKYQMVKIMSKVFNLSMDHLEPVNGPTSSSTPRPYHCQLDCSGLEKLNIGARTSFEGAIKRVLQKFV 1040
VL+TGA+GLLGRA+ KE + N W +G GF R ++V+L DS+ + +++DFQP V+VH AAERRPDVV N+ LN+ A+ ++AK A+ +G+FLIYIS+DYVFDG+ PPY P PLN YG+TK +GEK N A+LR+PILYGEVE++ ESAVT +++ +V+ N+SA + +++ R+PT +DVA VCRQ+ + P+ KG FHW GNEQ+TKY+M ++ FNL HL P+ RP + QLDCS LE L IG RT F IK L F+
Sbjct: 31 VLVTGATGLLGRAVHKEFQQ-NNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLIYISSDYVFDGTNPPYREEDIPAPLNLYGKTKLDGEKAVLENNLGAAVLRIPILYGEVEKLEESAVT----------------------VMFDKVQFSNKSA---------------NMDHWQQRFPTHVKDVATVCRQLAEKRMLDPSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCSKLETLGIGQRTPFRIGIKESLWPFL 323
The following BLAST results are available for this feature:
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