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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052464 ID=TCONS_00052464|Name=TCONS_00052464|organism=Clytia hemisphaerica|type=transcript|length=1332bp
tcagcacaaaaaataaaaacagttgaataaaaaacaatacaATGAAAGTC
TTAATCACAGGAGCGTCAGGTTTACTTGGAAGAGCAATCAAGAAAGAATT
GGAAGCTGTCAATGGATGGAAAATTCTGGGTCTTGGTTTTACACGACTCA
ATGGTGGACTGAAGAAAGTTGATCTGACTGATTCTGATGAGCTAGAAAAA
GTTATGAACGATTTTCAACCAGATGTCGTGGTTCACTCAGCGGCCGAAAG
ACGTCCTGACGTGGTCGGGAACAAAGAGACTGAAACAGTCGCTCTCAACA
TCAAAGCTACTGAGCATATTGCAAAACTAGCTTCGAAACTGGGTAGCTTT
CTCATCTACATCAGTACTGATTACGTCTTTGATGGTTCAGCTCCTCCATA
CACGCCTAATAGTAAACCAAACCCTTTGAATCGTTATGGACAGACCAAGT
TTGAAGGTGAAAAAGTTACGGCATCGAATTGTGAACGCCATGCTATCTTA
AGAGTACCTATCCTATATGGTGAAGTTGAAAGGGTCAATGAAAGTGCTGT
TACCGGGCTGCTTGTTAATCTGAAGGATACAAGTACTCCATCCAAGATTT
CTAATTACGAATTGCGATACCCAACGTTTACTGAAGACGTTGCAGTTGTT
TGTCGTCAAATGATTCAGCATTCCCAAACTGCCCCTACATTCAAAGGGAT
TTTCCACTGGCAAGGTAATGAGCAACTCACCAAATATCAAATGGTTAAAA
TCATGTCCAAAGTATTCAATCTATCTATGGATCATTTGGAACCTGTAAAT
GGACCCACATCGAGTAGCACGCCTCGACCTTATCATTGTCAACTCGATTG
TTCTGGTCTTGAAAAACTGAATATTGGTGCAAGAACTTCATTTGAAGGTG
CCATCAAAAGAGTTTTGCAGAAATTTGTTTGATCGTGTAAGTTGatcatt
ttttcatgttttatactttttttttatcaattttggatttaattttcttt
gtatttgaaTATAATCGGGACACTATCAGCTACGTAACCTTTACATCGTT
TTTGtcgcttttttcaaaatatttataagtttcatttcgtgatattTGTG
CGACAAAGATTCTCGATAAGAAGACAATATTTGGGAGGGGTAGATTTAAC
TGAAGTGCAGAATGTATGGTTAGTTTTGAATTATGTggtattttcttttt
gtttgtttcaatGTTAAAGTAACTTAGTGAGTAGGTTGGGGTAATCAAAA
AACGCGAAGTTTGAGTAATTTACTTCAACCAAAGGTAATTCACATTTGAA
GGTAGGCGCCTAAAGCGAAGCGTAATCTAATG Run BLAST on NCBI transcript from alignment at scaffold_214:253449..255892+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052464 ID=TCONS_00052464|Name=TCONS_00052464|organism=Clytia hemisphaerica|type=transcript|length=2444bp|location=Sequence derived from alignment at scaffold_214:253449..255892+ (Clytia hemisphaerica)
tcagcacaaaaaataaaaacagttgaataaaaaacaatacaATGAAAGTC
TTAATCACAGGAGCGTCAGGTTTACTTGGAAGAGCAATCAAGAAAGAATT
GGAAGCTGTCAATGGATGGAAAATTCTGGGTCTTGGTTTTACACGACTCA
ATGGTGGACTGAAGAAAGTTGATCTGACTGATTCTGATGAGCTAGAAAAA
GTTATGAACGATTTTCAACCAGATGTCGTGGTTCACTCAGCGGCCGAAAG
ACGTCCTGACGTGGTCGGGAACAAAGAGACTGAAACAGTCGCTCTCAACA
TCAAAGCTACTGAGCATATTGCAAAACTAGCTTCGAAACTGGGTAGCTTT
CTCATCTACATCAGTACTGATTACGTCTTTGATGGTTCAGCTCCTCCATA
CACGCCTAATAGTAAACCAAACCCTTTGAATCGTTATGGACAGACCAAGT
TTGAAGGTGAAAAAGTTACGGCATCGAATTGTGAACGCCATGCTATCTTA
AGAGTACCTATCCTATATGGTGAAGTTGAAAGGGTCAATGAAAGTGCTGT
TACCGGTATggattttaatttaatgttaatcagatggtttgagattgACA
TGTAGATTCCTTCTATTCTCCTgagcaaaacctcaaaatatcaTTGCCTA
TATTTTCCAAAGACGAGGTATTTAGATTACAAGTTTTTTagtaagaaaac
aatagaatttcaacgttaAAACTGTGCAAGAACCCGTTTTCAGTAATTTC
AAACtgtgatatctcgactttggagaGTAGTTGGACAAATATACTTATAT
TTTACTTGGAGCACAAAAGGTTTCTGCAGACCAAATATCTCAaatcatct
gattatccctttactGAGGATTGAAACGTTTCCAAAATTTGTATAACTTC
TCTTCATTTTCCCGCTCGACATTTTTTCGACTAGActtcaaatgtttttt
ctcGAAACAACAGGACCAAACACTGTTTATTTAAGTCTCGATCTTGCTAC
TTTCGTAGTCGAAGAGTTTATGTTGAAGGGAAATGAACATTTCTTTTAAG
GGCTGCTTGTTAATCTGAAGGATACAAGTACTNATTGTGAACGCCATGCT
ATCTTAAGAGTACCTATCCTATATGGTGAAGTTGAAAGGGTTAATGAAAG
TGCTGTTACCGGTATGGATTTTAATTTAATGTGTTAACGAGgttaatcag
atggtttgagattgACATGTAGATTCCTTCTATTCTCCTgagcaaaacct
caaaatatcaTTGCCTATATTTTCCAAAGACGAGGTATTTAGATTACAAG
TTTTTTagtaagaaaacaatagaatttcaacgttaAAACTGTGCAAGAAC
CCGTTTTCAGTAATTTCAAACtgtgatatctcgactttggagaGTAGTTG
GACAAATATACTTATATTTTACTTGGAGCACAAAAGGTTTCTGCAGACCA
AATATCTCAaatcatctgattatccctttactGAGGATTGAAACGTTTCC
AAAATTTGTATAACTTCTCTTCATTTTCCCGCTCGACATTTTTTCGACTA
GActtcaaatgttttttctcGAAACAACAGGACCAAACACTGTTTATTTA
AGTCTCAATCTTGCTACTTTCGTAGTCGAAGAGTTTATGTTGAAGGGAAA
TGAACATTTCTTTTAAGGGCTGCTTGTTAATCTGAAGGATACAAGTACTC
CATCCAAGATTTCTAATTACGAATTGCGATACCCAACGTTTACTGAAGAC
GTTGCAGTTGTTTGTCGTCAAATGATTCAGCATTCCCAAACTGCCCCTAC
ATTCAAAGGGATTTTCCACTGGCAAGGTAATGAGCAACTCACCAAATATC
AAATGGTTAAAATCATGTCCAAAGTATTCAATCTATCTATGGATCATTTG
GAACCTGTAAATGGACCCACATCGAGTAGCACGCCTCGACCTTATCATTG
TCAACTCGATTGTTCTGGTCTTGAAAAACTGAATATTGGTGCAAGAACTT
CATTTGAAGGTGCCATCAAAAGAGTTTTGCAGAAATTTGTTTGATCGTGT
AAGTTGatcattttttcatgttttatactttttttttatcaattttggat
ttaattttctttgtatttgaaTATAATCGGGACACTATCAGCTACGTAAC
CTTTACATCGTTTTTGtcgcttttttcaaaatatttataagtttcatttc
gtgatattTGTGCGACAAAGATTCTCGATAAGAAGACAATATTTGGGAGG
GGTAGATTTAACTGAAGTGCAGAATGTATGGTTAGTTTTGAATTATGTgg
tattttctttttgtttgtttcaatGTTAAAGTAACTTAGTGAGTAGGTTG
GGGTAATCAAAAAACGCGAAGTTTGAGTAATTTACTTCAACCAAAGGTAA
TTCACATTTGAAGGTAGGCGCCTAAAGCGAAGCGTAATCTAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052464-exon-scaffold_214-1491911889:253449..254003 | TCONS_00052464-exon-scaffold_214-1491911889:253449..254003 | Clytia hemisphaerica | exon |
| TCONS_00052464-exon-scaffold_214-1510915933:253449..254003 | TCONS_00052464-exon-scaffold_214-1510915933:253449..254003 | Clytia hemisphaerica | exon |
| TCONS_00052464-exon-scaffold_214-1575043694:253449..254003 | TCONS_00052464-exon-scaffold_214-1575043694:253449..254003 | Clytia hemisphaerica | exon |
| TCONS_00052464-exon-scaffold_214-1491911889:255116..255892 | TCONS_00052464-exon-scaffold_214-1491911889:255116..255892 | Clytia hemisphaerica | exon |
| TCONS_00052464-exon-scaffold_214-1510915933:255116..255892 | TCONS_00052464-exon-scaffold_214-1510915933:255116..255892 | Clytia hemisphaerica | exon |
| TCONS_00052464-exon-scaffold_214-1575043694:255116..255892 | TCONS_00052464-exon-scaffold_214-1575043694:255116..255892 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_214 | supercontig | scaffold_214:253449..255892 + |
Blast
BLAST of TCONS_00052464 vs. Swiss-Prot (Human)
Match: MAT2B (Methionine adenosyltransferase 2 subunit beta OS=Homo sapiens GN=MAT2B PE=1 SV=1) HSP 1 Score: 291.582 bits (745), Expect = 2.550e-94 Identity = 139/294 (47.28%), Postives = 191/294 (64.97%), Query Frame = 3
Query: 48 VLITGASGLLGRAIKKELEAVNGWKILGLGFTRLNGGLKKVDLTDSDELEKVMNDFQPDVVVHSAAERRPDVVGNKETETVALNIKATEHIAKLASKLGSFLIYISTDYVFDGSAPPYTPNSKPNPLNRYGQTKFEGEKVTASNCERHAILRVPILYGEVERVNESAVTGLLVNLKDTSTPSKISNYELRYPTFTEDVAVVCRQMIQHSQTAPTFKGIFHWQGNEQLTKYQMVKIMSKVFNLSMDHLEPVNGPTSSSTPRPYHCQLDCSGLEKLNIGARTSFEGAIKRVLQKFV 929
VL+TGA+GLLGRA+ KE + N W +G GF R ++V+L DS+ + +++DFQP V+VH AAERRPDVV N+ LN+ A+ ++AK A+ +G+FLIYIS+DYVFDG+ PPY P PLN YG+TK +GEK N A+LR+PILYGEVE++ ESAVT + ++ ++ + + +++ R+PT +DVA VCRQ+ + P+ KG FHW GNEQ+TKY+M ++ FNL HL P+ RP + QLDCS LE L IG RT F IK L F+
Sbjct: 31 VLVTGATGLLGRAVHKEFQQ-NNWHAVGCGFRRARPKFEQVNLLDSNAVHHIIHDFQPHVIVHCAAERRPDVVENQPDAASQLNVDASGNLAKEAAAVGAFLIYISSDYVFDGTNPPYREEDIPAPLNLYGKTKLDGEKAVLENNLGAAVLRIPILYGEVEKLEESAVTVMFDKVQFSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRMLDPSIKGTFHWSGNEQMTKYEMACAIADAFNLPSSHLRPITDSPVLGAQRPRNAQLDCSKLETLGIGQRTPFRIGIKESLWPFL 323
The following BLAST results are available for this feature:
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