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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052465 ID=TCONS_00052465|Name=TCONS_00052465|organism=Clytia hemisphaerica|type=transcript|length=358bp
caattattctcgaattgcactcgttatcatgtgattacatatacaaatCA
TAATTTCTTCATTGCCTCGACATACCTTCTTTTTGTTACTGCTTTGTAGT
TCAGCCTCATCGTCGTCCATTTCATAAGATGGTttatttttcatccaatc
acGCAACATCTTGTACAAAGATGCTTTCTCGTTGAAACGTGCCAAATTGA
TTCGACGATCGTACAGTTTAAGAACGTAACTAGgtttttgttttttattg
taGGATTCTGTgaataaagaaaattgaagattttaacTAAGAAAATGAAA
CTGTATTACTTTTTGACGATCGAAAAAACccattttggaaaattgaccTC
AAAGTCCT Run BLAST on NCBI transcript from alignment at scaffold_214:69353..71326- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052465 ID=TCONS_00052465|Name=TCONS_00052465|organism=Clytia hemisphaerica|type=transcript|length=1974bp|location=Sequence derived from alignment at scaffold_214:69353..71326- (Clytia hemisphaerica)
CAATTATTCTCGAATTGCACTCGTTATCATGTGATTACATATACAAATCA
TAATTTCTTCATTGCCTCGACATACCTTCTTTTTGTTACTGCTTTGTAGT
TCAGCCTCATCGTCGTCCATTTCATAAGATGGTTTATTTTTCATCCAATC
ACGCAACATCTTGTACAAAGATGCTTTCTCGTTGAAACGTGCCAAATTGA
TTCGACGATCGTACAGTTTAAGAACGTAACTAGATAATGATTAAAAGATA
AAAAAAGGTAAATGTTGTCCTGAATACAGTCGCTCTAATGTTGTCTTCTG
ACCAGCCACCAGAACCGTTGGGAAACCAACGGATCCGGCGAGACTCGAAC
TCAACCATGCCTATTCAACTCACAACCATGCCTATTTTCTCCCAATTCTG
ACCAGTCAGTAGACAAGAATTCACTTCCAGCTTTACCAAGCGGCAATTGA
ATCCTCGGGTTCCACATAGACCCGTAGCTCAATGGTAGAGCAAATGCCCG
CGAATGGCATGGTTGTGAGTTCGAGTCTCGCCGGATCCGTTGGTTTTCCA
ACGGTTCTGGTGGCTGGTCAGAAGATAAATGTTGTCCGTTTTACACGTTC
ATTTTGTGTATACCTATACAGTTTCTATTATACAGTAACATCTTTTTTTA
GAGACACAAACGCTTAAAATAAATGTCATTTGAACATGCTTGAGGGATAG
GATTTATTGGAAAATAATTTTATTAGTCAAGGTTCTTCTTCTTAAAAGTC
CATTAAAAGTAACATTGATCTTGAAGGAAAGGCCCGGGGACTTTAAAACG
AAACCCTTACAGAGCAGAGAAAATTTAGCCAGATTTGAGTAAATTCGAGC
AAAAAATCGACCCTTACGTTGCATTTTCTTAAAAGGTTTTGACCATTTGA
AGGTGAAAATTGGGACGATTTTCCCAATTTTACATCCTTAGAGTGTACTT
TTTCTCATATTCGCTCATTTCGACCCTTGCAGCGCACTTTTAGAAGCTTG
GAAAAGGACACTTAAGAGCCGCACCTACAGTAGGTCGTTTACCTTGAGGG
CTGATNTTAGAAGCTTGGAAAAGGACACTTAAGAGCCGCACCTACAGTAG
GTCGTTTACTTTGAGGGCTAATAATTTCCATGGTTGAAAATGACCTCGAT
TATAACTGAGAGATAATACAATTGTGTTTTTAAAAGCAGATTAGCAGAAA
CAAATTTAGCAGAAATAAATCTTACCTTGCTGAAAACCGGTATGTAGAGA
TGTATATAAGGTGTAAAAGAAAAAAAAATGGTACAACTCACTCTGATGAT
ATAAATAATTCAAAGATACAAAAAATCATCAAAAACAAAAAAACATAAGC
ACAAGTTATCTAGATGGAATCCTTTTGGGTTTTCGGTATGGTCTACAGTG
TGTCCCGAAAAAAAATGATTCCCTGTAAATATATTCAAGCCTGTGATAAA
AGCTATGTTCTAACATCCCGAACTAAAAATCCTGCTTTAGCGGATTTTCT
TGACAGTACTGGAATTTCGGTATGTTGATTTTAGACTCGTACCGATAATC
CACAAGGAAGGACAAGGAAAATGACAAATTGTTTTGCAGGTTATCCAATT
TTAACCTAGTGTCCATGAACGGAAAGTCGAGACTTTAAAAAAGATAAATT
TCAAATGAGAAATAATGCTTTTCAAACCTTTAATACCCCCTGACTTTCCT
AAAAAAGATTTCTAGTTCTCATTTTCCAGGAAAAAAGGAGTGGGGAAGGG
ACTCTAATACTACTTTCATAATGGTTTTCCGAGATTGGAAGATAAAAAAG
GTCAGGAAATCTTGAATTAAAGAAAGAAAGAAAATATTTGGAAACTTACG
TTTTTGTTTTTTATTGTAGGATTCTGTGAATAAAGAAAATTGAAGATTTT
AACTAAGAAAATGAAACTGTATTACTTTTTGACGATCGAAAAAACCCATT
TTGGAAAATTGACCTCAAAGTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052465-exon-scaffold_214-1575043694:71094..71326 | TCONS_00052465-exon-scaffold_214-1575043694:71094..71326 | Clytia hemisphaerica | exon |
| TCONS_00052465-exon-scaffold_214-1575043694:69353..69477 | TCONS_00052465-exon-scaffold_214-1575043694:69353..69477 | Clytia hemisphaerica | exon |
| TCONS_00052465-exon-scaffold_214-1510915933:71094..71326 | TCONS_00052465-exon-scaffold_214-1510915933:71094..71326 | Clytia hemisphaerica | exon |
| TCONS_00052465-exon-scaffold_214-1510915933:69353..69477 | TCONS_00052465-exon-scaffold_214-1510915933:69353..69477 | Clytia hemisphaerica | exon |
| TCONS_00052465-exon-scaffold_214-1491911889:71094..71326 | TCONS_00052465-exon-scaffold_214-1491911889:71094..71326 | Clytia hemisphaerica | exon |
| TCONS_00052465-exon-scaffold_214-1491911889:69353..69477 | TCONS_00052465-exon-scaffold_214-1491911889:69353..69477 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_214 | supercontig | scaffold_214:69353..71326 - |
Blast
The following BLAST results are available for this feature:
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