TCONS_00052466 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052466
Unique NameTCONS_00052466
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1687

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052466 ID=TCONS_00052466|Name=TCONS_00052466|organism=Clytia hemisphaerica|type=transcript|length=1687bp
TTATCAGTttagagacaatttcaaataataatttccaagaagaaaatcaa
tcatGTCAATATATTATGCTTTGGTAGCAAGAGGACCAATTATTTTGGTC
GATTTTACAGAACATCATGGGAATTTTGAACAAATAACAACCAAAATATT
ACAAAGTATAGATACAAGTCAAGACTCGAAATGCTCTTACACTTCAGAAA
GCTATGTCTTCCATGTGATGATCAGCCAAGGACTTGTTTTTCTATGCATG
GCAGATGAATCAATGGGCAAAACAATGCCATATGGTTATCTGACAGAGAT
CAAGAACAAGTTCATGGGTGGTACACTACGTGAACGTGCTTTCCATTGTA
ATGCATACGAATTAAAACATGATTTTAGTCCAGTACTTATGCAGCAAATG
AGACGTTTCAACAAAGGTGACGTGGAAACAAACAGCAAAGTAAAGAACCT
ACAAAAAGATGTGGATACAGTCAAATCGGTCATGACAGAAAACATTGGGA
AACTTCTTGAACGTGGTGAAAAGCTAGATGTGTTGGTTGACAAGACAGAA
GATCTATCGAAATCGTCGGAGTCGTTCGCTCGTTCAGCAAAGAAAGTTCG
GCGGAAGATGTGGTGGCAAAACAAAAAGATGTGCTTGATCCTGTCCTGTG
TTCTCTTTGTCATCCTCGCTATCATCACACTCGTCATTCTCTATGAAGTG
GGCGTCTTCTCACCTTCTAATTCATCATCAAGTGGCGGAGGCGGTGAGGT
AGTCCCGATATGAAATGTTACATTGATTAATGTCATTGGATAGGGGCCCG
TTGTGAAGCTCTAACAAAATGAACTCAATGACTATTTTCGTGTAGagtta
aattaaattttatgttGCAATTTATATAGATGTTATATTATTTTTCTAAG
TTTAATTTATTTAGCATTTTGCTTCATGTACCACACTGCACTGAATTAAG
ATGGCAAAAACTTTGAAATGTTTTGAGTGAGGGAGGAGCATAGAAAAATA
GCCAGaactaatttcaaattttgatcaaattgaTGATGCCAAATTTTAAC
TTAAACTTATCCTCTTTTTCCATGATACGGTAGTAGTCTCCTACTTGAAG
GATAAATATTTTAAGAATGAATCAAACATAATGAGCCAAGATTGTGTGGA
TCAAAACACATTTTCTTTGAACGATACTTCGATCTTTACAGATCTCAAGT
TTTCACTTCATTTGATAAAGACCTAAAGATCGAAATATCGTTCAAAGAAA
ATgtgttttatgttttgattattttacgaATAAATATTCGTTTCGATTCA
CTCTCATTCAGGGGATTCAGTACCTATTGTTTCTTCCCGATGTCAAAAAG
ACTTTCACCAGATCGTTGATGCTCTAACAGAATGCATCATAGGACAGTTG
TAAAAGTTTGGTAGATACTGGGTGTGCCTCATTTTCCATCAGACCCTTGC
CATTCTAGAGAGTAACTTCTAAATACACAAAAGCTGTAATTTGTtaatta
ttataatttttgCCTTGTAAAAAATCGTTCAGAATTTTATATACCCTTTC
AAAATAGAATTTATAAATTGTAAATCTTATGTTTTTTTGATAGTAAGAAG
ATAAACCTTTTCCAAAATCTACATCATTCCTTCCAAGTGAAACCTTTTCT
CCTCTTTCATTGACAAGTCTTTTTCcttgaaattatt
Run BLAST on NCBI

transcript from alignment at scaffold_214:98709..108507-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052466 ID=TCONS_00052466|Name=TCONS_00052466|organism=Clytia hemisphaerica|type=transcript|length=9799bp|location=Sequence derived from alignment at scaffold_214:98709..108507- (Clytia hemisphaerica)
TTATCAGTTTAGAGACAATTTCAAATAATAATTTCCAAGAAGAAAATCAA
TCATGTCAATATATTATGCTTTGGTAGCAAGAGGACCAATTATTTTGGTC
GATTTTACAGAACATCATGGGAATTTTGAACAAATAACAACCAAAATATT
ACAAAGTATAGATACAAGTCAAGACTCGAAATGCTCTTACACTTCAGAAA
GGTAAGATTTTATGGATAAATGAAATGTAGCATAATTAGAAAAATCCCTG
TCTGCATCTGACAGGGTCCTTTAGCAAAATGTCACCCCCTCTTTACATTC
TCGAAAAACAGGCTTTTTTCATCCCTGAAAATTGACAAGCTTTAAAAATC
ACAAAATTTTAAGACGTGGTTTTAACAGTGTTAATTTTCAAACGCTATCT
GACAGGGTCCTCTAGCAAAATGTCGTCCCTCTTTGCATGCTGATAATTTT
TTGTCATAAATAAATTATGTTCTTTAAAAATATCATTACAAAGTGTTACG
TTCATTGCAATTTTCTTTCAGCTATGTCTTCCATGTGATGATCAGCCAAG
GACTTGTTTTTCTATGCATGGCAGATGAATCAATGGGCAAAACAATGCCA
TATGGTTATCTGACAGAGGTATTGTATTATTTGAATGCACAATTCGTGTT
TAGTTCGTTTTGCTCACTGAATACTTACTAGATTCACTCATTTTGAAATA
GAGTTATTGAACATTCTCAGGTGCCAAATAAAGTTAATTTAAAGGAAAAA
TTATCAAATGCGGGCCAAATTATCAGGGTTCCAAACTTTCTAACCTCAAA
AAGGCAATTTAAAGTATGTAGAAAATTTAGCCAAGATATATTTTTTTGAT
TCTGATAATTTAAGAAATCCGAAAAAAAAACGAAAAAAGAGGTGAATGTT
GATTTAAATTATCTCATTATCTTTCTAAGTAAGAGGTCGAAATATCTTTT
TAAAAAAATATTTATTCTCATTATCTTTTTACATACAGATCAAGAACAAG
TTCATGGGTGGTACACTACGTGAACGTGCTTTCCATTGTAATGCATACGA
ATTAAAACATGATTTTAGTCCAGTACTTATGCAGCAAATGGTAATACTGT
TTCCAAATTTCTCTTTGCATGAAATAAAAAACTCCTGTTAAAGTAGAGGC
TACTATTTGTTCCTATACATTTTCGTGCTCTTTCAAATACACTCATTTTT
TTATAAGCATACGGGAAAATAAGGTCGGGGCTCAATCTCGAATAATTTCC
ACCCTTACAGTGCATTTATCAAAAGTCCACCCNAGAATAAGGGAAAGGTT
TCCCTTACACCGATACACTCTTTTTTTTATAAGCATACGGGAAAATCCGG
TCGAGGCTCAATATGCTTAGTAAAATCTCATTTTCAGCCTTGATGTATGC
TTATTTATATGCTTAAATTTTGATTTGTTAATTTTCCTTGGGTTCTATTT
CATTCTATTGGGTATCTTTGTAATTTGGAGCAGCAGGCGAAAATCTTTGG
TCTAAGAAAGCTCAAACAGCTTTAATGAAAGTAACCCTAGAAAGGTCAGT
TAGCGTCGTTTTAGAAAAGAAGCACAAATTTTTTTACATTTCAGCTTGGA
GATATACTTAGCATTATGCTTATTTTTTACCGAATTTGAGCCTAAGTATA
TGCGTTTAAACGTTATGCTTATATATATAAAAAGAGTGTAGTAGTAGTAA
AATCTTTAAATACTGTTATACTGTTAAATACGGCTATCCATGACGTATTT
CCATGAAAATGAGCATTCGAACGGTCGCACCATTCGAGTTCAAAATCAAA
AGGCTAGAGAAGAATCTCTTGAATCAAAAATTATTCCCACTTTCCCATCT
AAATGTATGACTCTTGTGGTATTTAGACAAAGGCTGGATTAAAAGTAAAA
CTAATCATTAAGAAAAATAAAGAAAGCGCTATATTTAATTCGATATCCCA
ATTGCAGCACTAATCACACCTGTGGATAATTTCAATAATCATTTCATGAG
TCAAACTTCTTATCCATCCTAAAACAATTGAATATATTATAGAGACGTTT
CAACAAAGGTGACGTGGAAACAAACAGCAAAGTAAAGAACCTACAAAAAG
ATGTGGATACAGTCAAATCGGTCATGACAGAAAACATTGGTAAGTGAGAG
AATAGAGATGTTTATCCTTTTGTGTGTCTCCTTCTAAAGAGTTGGTATTT
GTAGCTAAAATATATTGCCTTAGAGCCTTATCACCTTCGCCAAAATCCTT
TTTTACTTCCTAATCAATTTGGTAATCTGTAGCCACACGATTGGCTGTGA
AAATAGCATGTCATAGATTCGATACGTTAAAGATAAATTGGTACTTGTAT
TTAAAAGCTTCTTGATGATTTCTATTTTCAAAGGTGAAAACTTTTTCAGC
TATGATTGTGATATAATAAGCAGATATTCAATGGGTAAAAGTTGGTTATT
GAGATTAATTCACCCGAGGTGATGTAATATTCAACGAGGCGAAGCCGAGT
TGAATATACATCACCGAGGGTGAATAAATCCAATAACCAACGAAAACCTA
TTGAATATATGTTTTATTATATACCTAGAGGCAAAAATAAAACATTAATT
ATGTCAATAGCTAAACGTTTCACTTAAAACACTCCTATAATCGAACGTTC
GAATGTTTTTCTTTCTTAATGATTTCCTTAATTACTTTAAGTCATAAAAT
TTGTTTATGAAATTGACAATAAATTTATTTTAATGAATTTCTTTGATAAC
AACCAAAGCAACAAAAAACTCAAAATTTGAAAACAAAATTCTACCGTGGT
ATAATAGCCATGGTATATCAGGAATTATTCAATGGCTGTTTTTGCCTACA
GATATATAATAATATATTTTAATACGTACATATGAATTTGAATAAGTATT
TCCGAATAAGAGAAGGTCATTAATGAGTAAAATTTGCGGAAATGGTGACA
CATGTACGTTGAAAGGCTCAAAGTTCCAGAAAATAGTTATACTAATACTC
TTTTGTTTTTGATGATTTGTGATTCTGACTTTGGAGGTCACCAAGGTGTT
GATGCTTCATCTTCTTTCGAACTCAAGAGTAAACCATAGAATTTCGAATT
GACATTTCTGTTGGGCTGACGCTATTGTTTCTTTTGAATAAGGATTTACG
AATTTTGGTGAAACTGAACATGTAGATGATTGGGTTTGATATTGTATGAA
CGGCATTCAAATAAATGTTTATTTTGCTGAATAACTCTTCTTGATCGCCT
ACTTTGAGTGGTATTAGGGAAGATACTATACATATGGGTGATAAACAGAC
ACAAGTCCAAAAATTCAAGTGTAAAACATCTTTTATGCTTCTCTTCAACC
CTTTCCAAAAATAAAGTTTTTCTGCTTCGATTCCGTTTGACTTCATGGAC
TCTCGGAGTGCATTTTCACTTTTGTTACGCTCTTTTAAAGTGATTTTTCC
CAAAATGAAAATGTTAATACACGTAGCGATACGTATGATATTACTAGTAA
TAATAAGATCATAGCTTGAATGATTCAATTTGTTCACTGTCGCATCACTG
AAGAATTGGATACAACAAAACCCACTAGCCGTGATTACACCAAATGTGAA
TAAGACCAAATGAATTTTGTTGCGCGTTACAAGTCTGTAGTATGACAAAC
AATAGACGACGGCTAGGTAACGGTCTATAACCACCAAATTAGTGACGTAT
AGGGACATAGTGTGTGTAAGCATCCCACCTGCTGATAATAATTTGAACAC
TAATACGTTCTCCACATCCATGATCATCAGGGAGGCGAATACCACTACTT
TGACAGTGAATATAGCATCAAATAGTGATAACAATTTGATTAAATGATAT
TGATTGTCTTGGAGTTTGGCACGGTAAATGACTAGCTGGAGAATTATATG
CATGACCATAATGGCGCACTGTGACGCCAAAAGAATATCCCATCTTGGTG
TTTGTTCGCCATAAGTTGGCGTTCTTGTTGTTGAATTCATTTACTTGGTT
TTCTTCTTATTTTCTTCTTATTCTGTTAGCCATATATTCTGTAAGGAAAA
AAAATAACTTGTGTCATTATAATCACTGTAGTTTGAATGGAATTCTGTTC
TGACATTAAAAACTATCCATTTCAATTGTATTTGAAACTAATCAGATCTA
TATTATAATCAATAAGTCGGTTGTTATTCTCTTTGTAAACAGAGAAAGAA
ATCATATTAGATTATTGTATCTCTCAAGTTGGGAATATCTCTGTGTACGA
GCTCATTCGAAATTGAAACTAGACAATTTGGAAGACTAGCTCCCAGTGGT
TTGCTAGGAGAGTAATCACCTCCAAAATAAACTAACAATTTTACTAAAAT
TTAAGTTAACTATAGTTAAAGAAATTAAAACTATCAAATTGTTTGCAAGA
CGAATAAAAGCTGAAACATTCGAAAACTCAACTTGTATACTTTTTCAACA
GCCACTGAAAGCCATCATCGACGCCTTATGGTCACAATTCCAACTGTTTT
AGAAACCTTCACCACAGAGCTTGTATTTTTAGTTTAAATCAGAAAGTAGG
TGTACTGATTATCGTTTCAGCCAGTTTCAGAAAAGGGCGAATGTCAATGT
TGTNAAATCAGAAAATAGGTGTACCGATTATCGTTTCAGCCAGTTTCAGA
CGAGGGCGAATGTCAATGTTTAAAAATATTATTTTTATAATAGTTACACC
TACCTTTGTGGACTCTAACTTTTTAATGTTCCAGTGCTCAGATTGTTAAC
TGTTCCTCACTACAAGATGTTTCAACTGCCAATTAAGTTGTAATTATACG
GCTTAATTACTCTTATTGTCCCTTAGGGGATTACCATAATTCTGCACTAA
TAAGCTCGGCTTTATGACAATCAAACCGTTTGCCTTCCGAATTTTTGTCG
ATTCCACATTACATAAATCTGCTGGGTGGCCGAACTCTCTTTATCAAGAA
TTTAATTGAAAGGGTCGCTATGGCTTCACATGAGAACTGAGAAGGTTGTT
TTCACAGAGTGAAAAAAAATTATGGTGAACATGGCCTACCACTTCTTAAT
TGTAAGAGTGAAGATATATGTTTAACCCCATCCCCCATTAATTAATGCTG
GACACTAATGTAAATTCGTTAATTAACCTCTCGACATGGTTGCCAGCTAC
TAAATGCAACTAAAACTGAAGTATTGTTCCGTAATTCCTACTTATTGTTA
AGTAGGAATATTACACATGCTTTTAAACTTTTTAAAAATCGATTATCATG
GCCTGACTTTCTCTTCCCATGTTAAATATTTGGGAGTTCTTCTCGGTGAT
TTTCTTTCGTGGAATTACTATTTTGAACTACTGGCATCTAAGTTAAGTAG
AGCAAATGGTATACTAGCAAAACTAAGACACTTTATATCATTTAGGGGCG
GTCCAAACCTAGGGGGGGGGGCTTTTCCTGTACCACCCCTTAACTTTTGA
TCTAGTGGTTCTTTTTGGATGAAATTGCCCAAAGTGAGCAAAAACCGAAA
ATTTCCTTTGTTCTTATAAATAGCTATTCTATTCTAACAAAGGCTTTAGA
AAAAAGTTGCCTGAGTTTAATCTTCAATATAAAAAAGAACAAAGAAATTT
TACGTTACAATAGCTTCTTTTAATTGAAAATAAAGAAAAATTACACTGCA
ATGTTTTCTTTTTAAACAAAAGAAAAGAAGGAGGTTTTTCGAATGTTTAC
AAAAATATAAAAGTTAGAAAAAGATTCTTTTTCAAAACTATGATTTACTA
ATGATTATTTACTGACGATTACCTCGGAATCGTATGTTTTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCACTCGTAACAAAGGAGAAAATACCGTAATTACTATTTTCTCCTT
TGTTACTCGTGATTAATCGTTAATTGCACTCCAAACCATACGATTACTAG
TACAAATAGAAACCTGAAACTCTTGGCTTGGTCTAAAAAGCAGGGTAGCC
ATTAGGCTACGTCATATCTTCCTTCGTTTCGAGCGTAAAACTCCTACTCT
TCAAGAGTACGGCCTAAAAGCCTGGATCTGTCTATTGTGTAGACTAGGTA
GCCATGTATTTCACGGACCAGAGCAAATACAATAAAAACTTTTAAAATGA
TAATCCTCATTGAAGCCAGGGGGTAAAAATTTAAAAAATATTTTAATTAT
TTAATTATGATGCAGAAGATATTGAAAGATTTAATTCAACTCAGAGCTTA
TTTTCTTCACTATTTGAACTCAGACCTTCTCATTACATTTTTGATTACCA
AATGTAATTTCTTTTACAGGGTACCGGCTAGTTTTCTTTACTTTATTCCC
ATGTTCTATGTTTTTGTATCCTTTCCTTAATGCAGGCGAATAAACTTCTT
TCAATTCAACCCCCCCTCCCAAACCTTATCTGGTAATTTTTCGATCACAA
AAAAAAAGGGTTTGGACTCTACTGCACGTTTAAAGCGTGCGAAAGAAGAG
ATTTGAAAGATCAATACATGCGAGATAAACCTGCCTCCCTCTCTTACCAG
ATGTCTTTTAATGGTGCTCAATTGAAACTAATTAAACAGTCAAAGCATAT
CCCTATTTCAAAATACTGCTTTTTGAATCTTTCAGTTATCAGAGCTAAAA
CCTTGTACCCTTTACTTTGGAAAGTCTTAAAAATGCTTCGAATTTTCTCG
TGTCAAGCTAGATATTATAACCTCCAACCTGTGGCAAAATCTTTACAAGT
TTGTTTGAGGCCAAGCCATTGGGCTCTTCCAGAAAAAAATCCGTTCATAG
GGGATGGAGGATGAATTGTCCAGGGGTCCCAAAAAAAAGTCTTAAAAATT
GCATTGTCCAGGGGGTAAATCTGCGATGTCCAGGGGTAAATTTTGGTGTT
CAAGGGGTAAAAAATTAAAATGTCCTGAGAGGTAATTCATTGAAAAAATA
AGATATCCTCCACACCCAATGAACGCATTTTTTCTGGAAGAGCCCAATGT
AAATTTATTTCTAAAATAACGCTTAGCTTAGAACCTTGGTTGCTTCAAAT
TCTAAAAATAAAACAATTGGCCTTTTAAAGGTCTAAAGTCAGTTACACTC
AATGATGCGCCTTGAAGACCACCTCTGTTGAAATGAAAGTGAAGAAGAAT
GAAGAGGAAGAAATTTTTTCTTCCTATGTTCAAGTATTCCTGTTTGTTTT
CTATTGGAATGAGTTGCAATAAAATAATCCACCTAGGAGTAAAAAAACTC
CCAACAAGAAATTACGTTTATTTTGAACTTAATATAACTGATAACAGACA
TGGTTTTATTTAAGGCTCTTTAATACCCTACTGCGATTTCTTTCGTAACA
CAGGTCCTTATCTTTTGATATAGTTTAAATGGAAACCTCGAAAACTGGTG
CGTTCACTTGAGATAAGGGAAGGCCGGAAATATTCGGGCTATTCCAGAAA
ACATTTTGCCCCCTTTTATCGAGGTAGTCGATTTTTTGGAAGGTTAACCC
TCTGATTTTCGGCTAACTTTCGAGGTTCATTTCTTGGATTTTAGTAGATC
TTTGTCTATTTTGAAGAGAACCTCTCCGCTGGTTTTCTCTTTTTCTGATG
CTCTTAAAATATTGCTTACTGAAAAAAAATTATTACACAGAGCTGTTCTA
TTGCAGCAGCTACAGCCACTTAATTAAGTGGATAGATTTTACCGGGAATT
AAATTTGGCGAATTCGTCAAAAATCGCCAAATTAAATCCCTGCCAAAATT
TCAAAACTCGGCCATAATCCACTAAAGGTATTTAAAAAGCCAAAACTTCA
GTAAAATTTCACCCAGATTTACCGGTAAAGTGTCCGTGCAACTTAACAAT
TTCACTGTGTGGTGTTTTTTCCACTTAAAAGTCTAAGAAAAAACAGATTG
TCCATGGTATTCAACTAGAATTCTTTTCTTTTTTGCGATTTCAGGGAAAC
TTCTTGAACGTGGTGAAAAGCTAGATGTGTTGGTTGACAAGACAGAAGAT
CTATCGAAATCGGTACGTCTCTTCTTAATTTCACCGGCGGCTCTGGACAA
TATTTCTTTCCTCTCCTGATTGTTACTTACGAAATGGATAACTCGTTTGT
GTCAAATCAATACCTCGGACTGCTTGTGTTACTGCTTGTATTAATCAACC
ACAACTTTTTCCCCTACCTTATTCTTTTAAGTTTTTCAAAAATGGTTAAG
ACGAAATGGAATTTTCTACACTGTTATTTTAGCCCCGCACTACTTACTGC
GAACAACAGGTGGGTAGAAATGAGTGAAATGGAGTGCACTCTGAGCAGTA
TAGGGAAATATCATTTACGAGTTTCTTTCTGTCTTTCTTCAGTCGGAGTC
GTTCGCTCGTTCAGCAAAGAAAGTTCGGCGGAAGATGTGGTGGCAAAACA
AAAAGATGTGCTTGATCCTGTCCTGTGTTCTCTTTGTCATCCTCGCTATC
ATCACACTCGTCATTCTCTATGAAGTGGGCGTCTTCTCACCTTCTAATTC
ATCATCAAGTGGCGGAGGCGGTAAGACGACTTCTCCACCGACAACAACCA
CAACAACGATAACGACAAAAATAATGACGACCATTAAGACGACAATTCAA
ACAACTTTTAAAACGACTGCTTCTACACCAGTTAAAAACGGGACGACTAT
TCTACCACCGACAAACTCTACGACAACGCCATCAAAGATTTAAACGGACG
ACTGTTATTGATTTTGTTTTGACTTGTTTTCTTCTTTTTTGTTATCATTG
TTCAGGTGAGGTAGTCCCGATATGAAATGTTACATTGATTAATGTCATTG
GATAGGGGCCCGTTGTGAAGCTCTAACAAAATGAACTCAATGACTATTTT
CGTGTAGAGTTAAATTAAATTTTATGTTGCAATTTATATAGATGTTATAT
TATTTTTCTAAGTTTAATTTATTTAGCATTTTGCTTCATGTACCACACTG
CACTGAATTAAGATGGCAAAAACTTTGAAATGTTTTGAGTGAGGGAGGAG
CATAGAAAAATAGCCAGAACTAATTTCAAATTTTGATCAAATTGATGATG
CCAAATTTTAACTTAAACTTATCCTCTTTTTCCATGATACGGTAGTAGTC
TCCTACTTGAAGGATAAATATTTTAAGAATGAATCAAACATAATGAGCCA
AGATTGTGTGGATCAAAACACATTTTCTTTGAACGATACTTCGATCTTTA
CAGATCTCAAGTTTTCACTTCATTTGATAAAGACCTAAAGATCGAAATAT
CGTTCAAAGAAAATGTGTTTTATGTTTTGATTATTTTACGAATAAATATT
CGTTTCGATTCACTCTCATTCAGGGGATTCAGTACCTATTGTTTCTTCCC
GATGTCAAAAAGACTTTCACCAGATCGTTGATGCTCTAACAGAATGCATC
ATAGGACAGTTGTAAAAGTTTGGTAGATACTGGGTGTGCCTCATTTTCCA
TCAGACCCTTGCCATTCTAGAGAGTAACTTCTAAATACACAAAAGCTGTA
ATTTGTTAATTATTATAATTTTTGCCTTGTAAAAAATCGTTCAGAATTTT
ATATACCCTTTCAAAATAGAATTTATAAATTGTAAATCTTATGTTTTTTT
GATAGTAAGAAGATAAACCTTTTCCAAAATCTACATCATTCCTTCCAAGT
GAAACCTTTTCTCCTCTTTCATTGACAAGTCTTTTTCCTTGAAATTATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033176XLOC_033176Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052466-exon-scaffold_214-1575043694:108307..108507TCONS_00052466-exon-scaffold_214-1575043694:108307..108507Clytia hemisphaericaexon
TCONS_00052466-exon-scaffold_214-1575043694:107890..107986TCONS_00052466-exon-scaffold_214-1575043694:107890..107986Clytia hemisphaericaexon
TCONS_00052466-exon-scaffold_214-1575043694:107418..107519TCONS_00052466-exon-scaffold_214-1575043694:107418..107519Clytia hemisphaericaexon
TCONS_00052466-exon-scaffold_214-1575043694:106369..106465TCONS_00052466-exon-scaffold_214-1575043694:106369..106465Clytia hemisphaericaexon
TCONS_00052466-exon-scaffold_214-1575043694:100396..100463TCONS_00052466-exon-scaffold_214-1575043694:100396..100463Clytia hemisphaericaexon
TCONS_00052466-exon-scaffold_214-1575043694:99888..100065TCONS_00052466-exon-scaffold_214-1575043694:99888..100065Clytia hemisphaericaexon
TCONS_00052466-exon-scaffold_214-1575043694:98709..99652TCONS_00052466-exon-scaffold_214-1575043694:98709..99652Clytia hemisphaericaexon
TCONS_00052466-exon-scaffold_214-1510915933:108307..108507TCONS_00052466-exon-scaffold_214-1510915933:108307..108507Clytia hemisphaericaexon
TCONS_00052466-exon-scaffold_214-1510915933:107890..107986TCONS_00052466-exon-scaffold_214-1510915933:107890..107986Clytia hemisphaericaexon
TCONS_00052466-exon-scaffold_214-1510915933:107418..107519TCONS_00052466-exon-scaffold_214-1510915933:107418..107519Clytia hemisphaericaexon
TCONS_00052466-exon-scaffold_214-1510915933:106369..106465TCONS_00052466-exon-scaffold_214-1510915933:106369..106465Clytia hemisphaericaexon
TCONS_00052466-exon-scaffold_214-1510915933:100396..100463TCONS_00052466-exon-scaffold_214-1510915933:100396..100463Clytia hemisphaericaexon
TCONS_00052466-exon-scaffold_214-1510915933:99888..100065TCONS_00052466-exon-scaffold_214-1510915933:99888..100065Clytia hemisphaericaexon
TCONS_00052466-exon-scaffold_214-1510915933:98709..99652TCONS_00052466-exon-scaffold_214-1510915933:98709..99652Clytia hemisphaericaexon
TCONS_00052466-exon-scaffold_214-1491911889:108307..108507TCONS_00052466-exon-scaffold_214-1491911889:108307..108507Clytia hemisphaericaexon
TCONS_00052466-exon-scaffold_214-1491911889:107890..107986TCONS_00052466-exon-scaffold_214-1491911889:107890..107986Clytia hemisphaericaexon
TCONS_00052466-exon-scaffold_214-1491911889:107418..107519TCONS_00052466-exon-scaffold_214-1491911889:107418..107519Clytia hemisphaericaexon
TCONS_00052466-exon-scaffold_214-1491911889:106369..106465TCONS_00052466-exon-scaffold_214-1491911889:106369..106465Clytia hemisphaericaexon
TCONS_00052466-exon-scaffold_214-1491911889:100396..100463TCONS_00052466-exon-scaffold_214-1491911889:100396..100463Clytia hemisphaericaexon
TCONS_00052466-exon-scaffold_214-1491911889:99888..100065TCONS_00052466-exon-scaffold_214-1491911889:99888..100065Clytia hemisphaericaexon
TCONS_00052466-exon-scaffold_214-1491911889:98709..99652TCONS_00052466-exon-scaffold_214-1491911889:98709..99652Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_214supercontigscaffold_214:98709..108507 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.400292	0.926729	2.31912	1.79161	0.391506	1.59321	0.787266	1.06848	0.324382	1.47362	1.44448	0.67033	0.224046	1.48224	1.76657	1.79547	1.49061	1.91933	0.394435	1.18048	0.388618	0.50125	0.594755	0.344246
Blast
[Close]
BLAST of TCONS_00052466 vs. Swiss-Prot (Human)
Match: VAMP7 (Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3)

HSP 1 Score: 117.472 bits (293), Expect = 9.670e-30
Identity = 69/195 (35.38%), Postives = 112/195 (57.44%), Query Frame = 2 
Query:   53 MSIYYALVARGPIILVDFTEHHGNFEQITTKILQSIDTSQDSKCSYTSESYVFHVMISQGLVFLCMADESMGKTMPYGYLTEIKNKFMGGTLRERAFHCNAYELKHDFSPVLMQQMRRF--NKGDVETNSKVKNLQKDVDTVKSVMTENIGKLLERGEKLDVLVDKTEDLSKSSESFARSAKKVRRKMWWQNKKM 631
            M+I +A+VARG  IL       GNF ++T +IL  I  S+++K +Y+  +Y+FH +    +V+LC+ D+   ++  + +L EIK +F   T   RA     Y +  +FS VL  Q++    NKG      KV   Q  VD +K +M  NI  + +RGE+L++L+DKTE+L  SS +F  +++ + R M  +N K+
Sbjct:    1 MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKI-PSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQT-TYGSRAQTALPYAMNSEFSSVLAAQLKHHSENKGL----DKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKL 189
The following BLAST results are available for this feature:
BLAST of TCONS_00052466 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
VAMP79.670e-3035.38Vesicle-associated membrane protein 7 OS=Homo sapi... [more]
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