TCONS_00052476 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052476
Unique NameTCONS_00052476
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length453

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052476 ID=TCONS_00052476|Name=TCONS_00052476|organism=Clytia hemisphaerica|type=transcript|length=453bp
AGATGAATACAATAATaacaaaatgagcttttaatttgaaaatggtCCCT
GACTTCTTACTGTGATTTACTTTATAAATAAAGTATAACAAAATGTTATA
ATTTAACAATATAATGCAAAAAGTAAGTAAAACACAAATCATAactataa
aaatgaaaagactCTTTTTAGTGAGGTCTGTAGGNTTCCTCAACAcgttc
aattttcttcttttgaccGCTTTGTTTGGTGATGTCTGTGATTgcttcct
tcttcttttcaagctTTTTGGTATTCTTCTCCACCTCACTGGTCAGCTTT
TTGTACTGCTCAGTACGGTAAATGAGCAGGTAAGTTAATCCCTCACTGAA
CAATGCAGTGGCAAGTGCGATAAACACAATCAAAATGGTATCTTCTAGCA
TGATGAATATATTTATCTAACTTTCTTTACagactttaaaaagaaaacaa
aag
Run BLAST on NCBI

transcript from alignment at scaffold_214:66733..67185

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052476 ID=TCONS_00052476|Name=TCONS_00052476|organism=Clytia hemisphaerica|type=transcript|length=453bp|location=Sequence derived from alignment at scaffold_214:66733..67185 (Clytia hemisphaerica)
cttttgttttctttttaaagtctGTAAAGAAAGTTAGATAAATATATTCA TCATGCTAGAAGATACCATTTTGATTGTGTTTATCGCACTTGCCACTGCA TTGTTCAGTGAGGGATTAACTTACCTGCTCATTTACCGTACTGAGCAGTA CAAAAAGCTGACCAGTGAGGTGGAGAAGAATACCAAAAagcttgaaaaga agaaggaagcAATCACAGACATCACCAAACAAAGCggtcaaaagaagaaa attgaacgTGTTGAGGAANCCTACAGACCTCACTAAAAAGagtcttttca tttttatagtTATGATTTGTGTTTTACTTACTTTTTGCATTATATTGTTA AATTATAACATTTTGTTATACTTTATTTATAAAGTAAATCACAGTAAGAA GTCAGGGaccattttcaaattaaaagctcattttgttATTATTGTATTCA TCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033180XLOC_033180Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052476-exon-scaffold_214-1491911889:66733..67185TCONS_00052476-exon-scaffold_214-1491911889:66733..67185Clytia hemisphaericaexon
TCONS_00052476-exon-scaffold_214-1510915933:66733..67185TCONS_00052476-exon-scaffold_214-1510915933:66733..67185Clytia hemisphaericaexon
TCONS_00052476-exon-scaffold_214-1575043694:66733..67185TCONS_00052476-exon-scaffold_214-1575043694:66733..67185Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_214supercontigscaffold_214:66733..67185 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
143.074 144.766 86.9246 76.0226 52.5497 35.1727 62.6234 66.5025 98.8787 82.8656 71.5928 78.3403 49.221 55.9369 67.3716 79.9199 90.705 83.2364 38.7956 47.8751 51.0311 45.4624 96.8605 81.6945 19.5138 21.874 54.4288 41.0658 65.1989 67.085
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052476 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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