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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052489 ID=TCONS_00052489|Name=TCONS_00052489|organism=Clytia hemisphaerica|type=transcript|length=1590bp
tgttttaaagGACGATTATATATGAGTAATAATGAACAGGTAAttggtaa
atatttttttatgtttttcagaTGTCAGAACAAATAAGAAAATTCGGCTT
TTGTGAAAGAGCCAATGCCgaccgaaaaaaaatatacaatatagTATGTC
CAACATTGTTGAAAACCAAATGTCAAATTGATACTCATCTACTTAGTCAA
GCTGTCTACAAAGTCATCAAATCTCAGCCCAACATCAACGCTGTTTTAAG
GTTCGAGGGAGAAGAAATTTACTTCAAACCTTTAAAAGAGATAGAACAGT
ATTTTGAAGTGTTGCCAAACATTGCTAATTGGAAAGACGTTTGTATAGAA
TACAATAATAAACATTTGAGAACAGATTTTGAAACTTATCCACCTTTTAA
ATTAATGTTGATTCAACCTTGTAAGGAAGAAGCTGTGGTCATCGCTGTTG
CAAGTCATTACTGTATGGATGGGACCGGAATTACTGCTATGACTAGTCTT
ATTTTAGAGACTTATTCAGAGCTTCAAAAAGATGCTAACTACGAACCAAT
GAAATATCCAGCTCCAAAATCTTTTGAAGATTATCGACTGGAATTTTTTG
GTTCCGAAGAAAAGTTTCGTGAACAACAAAAGCGTTTTAAAGAGTTTCAT
TTGAACGTTATGGATTCTGCAAattgttattttgaatttgaagagaATGA
TCGAGTAGTGTTTACACCATATTCAAGCACTGAGATCGAATTTGAGAATT
TCAAGAAAGAATGTAAAGCAAAGGGAATTACTGTTGGAGCTGCTTTATGT
GGAGTTCAAGCATGTGCTATGGCTGCTTGCatgtttaaaaatcaaaaaac
tgtCCCTGATGTTGTCAACTTGCTGATTGAAATCCCTATAAATTTGCGTG
GTCGAATCACTAAAGAAGTTTCTTGGAAGTGCGCTAACTACATGCCGTCC
AATCCTTATATCACCGTCAAAGTGGGTAGAGGTTCGACATTCTGGGAAAC
AGCAAGGCAAGTCAAGGATACCTTCAACCATATCTTAAGTGACGAATCAA
TGATATACTTGTTCGATTTGTTTACAAAAGATGATTTGTTTGATGAGCCG
GAAGAGAAAGAACGACTGAATGTTGCAAAGAAGAAAATTGGAGGCTTGGA
AAGACATACATGTTTCTCAAATATGTTAAAGTTTCCAGCACCTTTGGAAC
ACAAAGATTTCACAGTAGAAGCTTCATATTGTTGTGGTGGGCAATGGATA
TTGCCAACAACTTCTGTGATGGAATTCTTCGTTTATTCCGCTAAGAAATT
GAATTTAACAATGGTACATCGAGATGGAGTACTTAATGTTGGTAGAGCAG
AAGAAGTTATGAAATATGTTcaatattttgttgaaaatgtcATCAAATTT
GGTGAAAAAGATATCATGGTTTCTGAACTAGCCAGCATGGACTAAAATAG
TGGAGTTTGTCGTATAATTATTTACAATATTAGTTgattaattttaattt
caaaatactACTGTATAAATATTAAACTAGAAAATATTTAAACAGTGATA
CGGTCATATATGGCTTATTATTCATACTGTTTAATCGCGA Run BLAST on NCBI transcript from alignment at scaffold_215:52528..54424- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052489 ID=TCONS_00052489|Name=TCONS_00052489|organism=Clytia hemisphaerica|type=transcript|length=1897bp|location=Sequence derived from alignment at scaffold_215:52528..54424- (Clytia hemisphaerica)
TGTTTTAAAGGACGATTATATATGAGTAATAATGAACAGGTAATTGGTAA
ATATTTTTTTATGTTTTTCAGATGTCAGAACAAATAAGAAAATTCGGCTT
TTGTGAAAGAGCCAATGCCGACCGAAAAAAAATATACAATATAGTATGTC
CAACATTGTTGAAAACCAAATGTCAAATTGATACTCATCTACTTAGTCAA
GCTGTCTACAAAGTCATCAAATCTCAGCCCAACATCAACGCTGTTTTAAG
GTTCGAGGGAGAAGAAATTTACTTCAAACCTTTAAAAGAGATAGAACAGT
ATTTTGAAGTGTTGCCAAACATTGCTAATTGGAAAGACGTTTGTATAGAA
TACAATAATAAACATTTGAGAACAGATTTTGAAACTTATCCACCTTTTAA
ATTAATGTTGATTCAACCTTGTAAGGAAGAAGCTGTGGTCATCGCTGTTG
CAAGTCATTACTGTATGGATGGGACCGGAATTACTGCTATGACTAGTCTT
ATTTTAGAGACTTATTCAGAGCTTCAAAAAGATGCTAACTACGAACCAAT
GAAATATCCAGCTCCAAAATCTTTTGAAGATTATCGACTGGAATTTTTTG
GTTCCGAAGAAAAGTTTCGTGAACAACAAAAGCGTTTTAAAGAGTTTCAT
TTGAACGTTATGGATTCTGCAAATTGTTATTTTGAATTTGAAGAGAATGA
TCGAGTAGTGTTTACACCATATTCAAGCACTGAGATCGAATTTGAGAATT
TCAAGAAAGAATGTAAAGCAAAGGGAATTACTGTTGGAGCTGCTTTATGT
GGAGTTCAAGCATGTGCTATGGCTGCTTGCATGTTTAAAAATCAAAAAAC
TGTCCCTGATGTTGTCAACTTGCTGATTGAAATCCCTATAAATTTGCGTG
GTCGAATCACTAAAGAAGTTTCTTGGAAGTGCGCTAACTACATGCCGTCC
AATCCTTATATCACCGTCAAAGTGGGTAGAGGTTCGACATTCTGGGAAAC
AGCAAGGCAAGTCAAGGATACCTTCAACCATATCTTAAGTGACGAATCAA
TGATATACTTGTTCGATTTGTTTACAAAAGATGATTTGTTTGATGAGCCG
GAAGAGAAAGAACGACTGAATGTTGCAAAGAAGAAAATTGGAGGCTTGGA
AAGACATACATGTTTCTCAAATATGTTAAAGTAAGTTAATCTATTGATAA
ATTATATTTTTATCACTTCAGTCAGAAAGAAAAGACACTTTTTTATTCTG
CTACTGGCAGTTTCATGCCACTTTTGTGACAATCTTCAGGCAACTTTTTA
TCACTTGACTCTTGTACGAGTTTTATATCGAAGAGTTACCAGGGTCGAAT
CTTTTTAAAAAGAAAAAGACCGTTTTGTTATCAGTCCTTTCATAAATGTG
AGATTTCTATATCACTGTGATTGTCTTGGTTCTGAATTGTATTCTTTAAA
CTTAAAACTTCAAGATCTTCACTTTCCATTCTCACAGGTTTCCAGCACCT
TTGGAACACAAAGATTTCACAGTAGAAGCTTCATATTGTTGTGGTGGGCA
ATGGATATTGCCAACAACTTCTGTGATGGAATTCTTCGTTTATTCCGCTA
AGAAATTGAATTTAACAATGGTACATCGAGATGGAGTACTTAATGTTGGT
AGAGCAGAAGAAGTTATGAAATATGTTCAATATTTTGTTGAAAATGTCAT
CAAATTTGGTGAAAAAGATATCATGGTTTCTGAACTAGCCAGCATGGACT
AAAATAGTGGAGTTTGTCGTATAATTATTTACAATATTAGTTGATTAATT
TTAATTTCAAAATACTACTGTATAAATATTAAACTAGAAAATATTTAAAC
AGTGATACGGTCATATATGGCTTATTATTCATACTGTTTAATCGCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052489-exon-scaffold_215-1575043694:53245..54424 | TCONS_00052489-exon-scaffold_215-1575043694:53245..54424 | Clytia hemisphaerica | exon |
| TCONS_00052489-exon-scaffold_215-1575043694:52528..52937 | TCONS_00052489-exon-scaffold_215-1575043694:52528..52937 | Clytia hemisphaerica | exon |
| TCONS_00052489-exon-scaffold_215-1510915933:53245..54424 | TCONS_00052489-exon-scaffold_215-1510915933:53245..54424 | Clytia hemisphaerica | exon |
| TCONS_00052489-exon-scaffold_215-1510915933:52528..52937 | TCONS_00052489-exon-scaffold_215-1510915933:52528..52937 | Clytia hemisphaerica | exon |
| TCONS_00052489-exon-scaffold_215-1491911889:53245..54424 | TCONS_00052489-exon-scaffold_215-1491911889:53245..54424 | Clytia hemisphaerica | exon |
| TCONS_00052489-exon-scaffold_215-1491911889:52528..52937 | TCONS_00052489-exon-scaffold_215-1491911889:52528..52937 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_215 | supercontig | scaffold_215:52528..54424 - |
Blast
The following BLAST results are available for this feature:
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