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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052498 ID=TCONS_00052498|Name=TCONS_00052498|organism=Clytia hemisphaerica|type=transcript|length=2812bpRun BLAST on NCBI protein sequence of TCONS_00052498-protein >TCONS_00052498-protein ID=TCONS_00052498-protein|Name=TCONS_00052498-protein|organism=Clytia hemisphaerica|type=polypeptide|length=691bp QKLKGLNMCGIFAYLNYGVPRSRKFILDTLVNGLQRLEYRGYDSAGVAFDRun BLAST on NCBI transcript from alignment at scaffold_216:1..10332+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00052498 ID=TCONS_00052498|Name=TCONS_00052498|organism=Clytia hemisphaerica|type=transcript|length=10332bp|location=Sequence derived from alignment at scaffold_216:1..10332+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_216:1..10332+ >TCONS_00052498 ID=TCONS_00052498|Name=TCONS_00052498|organism=Clytia hemisphaerica|type=CDS|length=39444bp|location=Sequence derived from alignment at scaffold_216:1..10332+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00052498 vs. Swiss-Prot (Human)
Match: GFPT2 (Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2 OS=Homo sapiens GN=GFPT2 PE=1 SV=3) HSP 1 Score: 931.784 bits (2407), Expect = 0.000e+0 Identity = 452/689 (65.60%), Postives = 546/689 (79.25%), Query Frame = 3
Query: 24 MCGIFAYLNYGVPRSRKFILDTLVNGLQRLEYRGYDSAGVAFDSNEQFNETEGKTTSIVKNKGKVKCLSDKIL-EDTKCFDQEFSYHLGISHTRWATHGEPSPTNAHPHRSDETNEFVVVHNGIITNYKDIKQLLAKKGYMTESDTDTEVIVKLLKLIYDRDQQSGNEKKLSFPELVEQVILQLEGAFALVFKSSHFPNQCVATRRGSPLLVGVKSDKPITIDQIPVLVSQKSTEMSKDERPTL--EFDSQSTNFCTADGNGMEYFFASDASAIIEHTKRVIFLEDGDVALVRDGNLQIAGMNDSTP--LTRDVQHLQLEIQQIMKGNYSTFMQKEIMEQPESIYNTMRGRVNFEENRVILGGLVSHMDYIKRCRRLIFIACGTSYHSAVATRQLLEELTELPVMVELASDFLDRQTPIFRDDVCFFISQSGETADTLMALRYCKSRGALLVGITNTVGSSISRETMCGVHINAGPEIGVASTKAYTSQFLSLVMFGVMMAEDRISKQDRVNEIITCLKTFPEKISEVLKLDKEIHEIALKIHNQKSLLMMGRGYQFATCLEGALKVKEITYMHSEGILAGELKHGPLALVDKDMPVLMIALRDKTYDKCMNACQQVLARQGQPIVICTKGDEETKKIADYSLEIPQVPDCLSGVLTVIPLQLLSFHLAVLRGYDVDFPRNLAKSVTVE 2075
MCGIFAY+NY VPR+RK I +TL+ GLQRLEYRGYDSAGVA D N +E + + +VK +GKVK L +++ +D+ EF H GI+HTRWATHG PS N+HP RSD+ NEFVV+HNGIITNYKD+++ L KGY ES+TDTE I KL+K ++D + + ++F LVE+VI QLEGAFALVFKS H+P + VATRRGSPLL+GV+S ++ +QIP+L + E K+ T DS + D +E+FFASDASAIIEHT RVIFLED D+A V DG L I + S +R +Q LQ+E+QQIMKGN+S FMQKEI EQPES++NTMRGRVNFE N V+LGGL H+ I+RCRRLI I CGTSYH+AVATRQ+LEELTELPVMVELASDFLDR TP+FRDDVCFFISQSGETADTL+ALRYCK RGAL VG+TNTVGSSISRET CGVHINAGPEIGVASTKAYTSQF+SLVMFG+MM+EDRIS Q+R EII L++ PE I EVL L+++IH++AL+++ Q+SLL+MGRGY +ATCLEGALK+KEITYMHSEGILAGELKHGPLAL+DK MPV+M+ ++D + KC NA QQV ARQG+PI++C+K D E+ K A ++E+P DCL G+L+VIPLQLLSFHLAVLRGYDVDFPRNLAKSVTVE
Sbjct: 1 MCGIFAYMNYRVPRTRKEIFETLIKGLQRLEYRGYDSAGVAIDGNN--HEVKERHIQLVKKRGKVKALDEELYKQDSMDLKVEFETHFGIAHTRWATHGVPSAVNSHPQRSDKGNEFVVIHNGIITNYKDLRKFLESKGYEFESETDTETIAKLIKYVFDNRET----EDITFSTLVERVIQQLEGAFALVFKSVHYPGEAVATRRGSPLLIGVRSKYKLSTEQIPILYRTCTLENVKNICKTRMKRLDSSACLHAVGD-KAVEFFFASDASAIIEHTNRVIFLEDDDIAAVADGKLSIHRVKRSASDDPSRAIQTLQMELQQIMKGNFSAFMQKEIFEQPESVFNTMRGRVNFETNTVLLGGLKDHLKEIRRCRRLIVIGCGTSYHAAVATRQVLEELTELPVMVELASDFLDRNTPVFRDDVCFFISQSGETADTLLALRYCKDRGALTVGVTNTVGSSISRETDCGVHINAGPEIGVASTKAYTSQFISLVMFGLMMSEDRISLQNRRQEIIRGLRSLPELIKEVLSLEEKIHDLALELYTQRSLLVMGRGYNYATCLEGALKIKEITYMHSEGILAGELKHGPLALIDKQMPVIMVIMKDPCFAKCQNALQQVTARQGRPIILCSKDDTESSKFAYKTIELPHTVDCLQGILSVIPLQLLSFHLAVLRGYDVDFPRNLAKSVTVE 682 The following BLAST results are available for this feature:
BLAST of TCONS_00052498 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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