TCONS_00052505 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052505
Unique NameTCONS_00052505
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length939

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052505 ID=TCONS_00052505|Name=TCONS_00052505|organism=Clytia hemisphaerica|type=transcript|length=939bp
TTTGAGCAAATTTATAGTGGTAACTAAAGCTTGTGCTACAATATTCAAAA
TTaatTTTAGATGGGAGGCAATAACTGCATTTTAAATCTACGTAATTCGA
TAATACAGGTTCATTCTTCGagtgaaaatttaatttataaaaattatgaG
CGTGATAAAATAAGTACAAAAGATTAGATTAACTAACTTCATGTAGATGA
AATGGAAATCGAATCTTGTCTATCCAAAATCAATGCAATGTTATGTAAAT
CCAATGAGTCTAGATGAATGCCATTCATTTGCAAGATTTTAAAAGCTGTC
CTGAAGACAATCTCGATCAACAATTCTTTATTTTCCATAATTTGTTTAAA
TGTCATTTTCATCGCTTGTCCTACTAGACAATCTCCTATAACTCGAGTTA
CACAAAGTGCTGATTCAGCAGTATTTGTATCTGTCATATCCTCTCTGCTA
CACTTTAACTTTGCTTTTGTCATTTCGGTTTTTAAAGATCTGTTCACAAA
TTTGTAAGCTTTTAAAGTGTCATTCCCCGTATCTTGGTCCACATTGTAAC
TTATTTTGCATTCAAGTGCAGAAGATCTCCCATCAGATGTTACAATCTCA
CTGAACAAAGATGTGAATCTAAATTTTGACACGTTAAATCGTTTGAATTC
TGAACAGCAAGGTACTGGAGTCAGTAGAAATGATTTTGATACAAACAAAG
GTTGATCAAAAACTTCTAGAATAACAACTTCCcctttttcagcttttcca
acAACTTGACCCATCTGCGTCTGTTTTGTCTATTTGTCTGAAATTAGAAC
ATCTTGAATTGTATTGAGCTGACACAATAAAAGAAACGAAACTAAATATT
AAATACAACAACGATAAAAGAAAGAACTAATATATTAAGTGGGGAGACAG
TGACTCGGCTGCATAAAAGCTGAGTTACTCCCAAGCCAG
Run BLAST on NCBI

transcript from alignment at scaffold_216:76332..78188-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052505 ID=TCONS_00052505|Name=TCONS_00052505|organism=Clytia hemisphaerica|type=transcript|length=1857bp|location=Sequence derived from alignment at scaffold_216:76332..78188- (Clytia hemisphaerica)
TTTGAGCAAATTTATAGTGGTAACTAAAGCTTGTGCTACAATATTCAAAA
TTAATATTAAAGTCTGTCCACATATAATTGGCAGTGGAAACAAAAAAGGC
TGCAACTTTTGATACCTTTCGAATCAGATAGCGTTTTTGTGCTCGTNAAG
TAAGTGAGATTCCCTTTTCTGATAACCTTACCTAGTGCATTATAGGGATT
AGGGGGGGGGGGTTGTTAGTCTAAGGAGTATTTATAACGATCTAACAGAG
CTTGCATCAAAAATAACCGTCAAAATTTCATTGGGTTTTAAGACTTGAGG
ACACAAAAAGTTTTTTCACGTTGGTACAATGCAACATGCTCCATCCCACC
AACCTGAGGCGTCTCTGCCCCATTTTTCTTTCTACCAATAAAAATATCCC
TGGGACAATGTCTCAGGGACAAAATCAGTGTGTCTGTTGGGTATTTCCCT
TGCGTTGGTGGGATGAAGCATGTTGCATTGCACCAATAAACTTTTTGTGT
CCCCAAGCTTTAGGGTCAAATTGGTACTTTTGTAGATAGAGACNTATTGT
GAAAAAAATTTTCAAAAATATTTATTCCGTCAAAAGTTATTGACTTAAGT
GTGCAGCCCATTGACCTCAAAAAAGGGTACTTTTTGCTGCTTTTTGCAGT
TTTTTGGCCCCAATCAGGCCAAGACTTTGATCCATAACTTTGGACGGAAT
AAATATTTTTGAAAATTTTTTTCACAATGAAGATAAGCTAAGATTAAATT
TCCATTATTGTGAAATTGGTAATTATAGCTCAAATAGGGAAGAAGTTGAT
TTTTTTCTTCTTCATTTTTCATCTTCGTTTTTCAAAATAAAATCAGGTTT
TTTTATTTGAAATTATTCCACTCGTGATTATCTTTTCAACGAGTGCAAAA
ACGCTATCTGATTCGAAAGGTATCAAAAGTTGCAGCCTTTTTTGTTTCCA
CTGCCAATTATATGTGGACAGACTTTAGATGGGAGGCAATAACTGCATTT
TAAATCTACGTAATTCGATAATACAGGTTCATTCTTCGAGTGAAAATTTA
ATTTATAAAAATTATGAGCGTGATAAAATAAGTACAAAAGATTAGATTAA
CTAACTTCATGTAGATGAAATGGAAATCGAATCTTGTCTATCCAAAATCA
ATGCAATGTTATGTAAATCCAATGAGTCTAGATGAATGCCATTCATTTGC
AAGATTTTAAAAGCTGTCCTGAAGACAATCTCGATCAACAATTCTTTATT
TTCCATAATTTGTTTAAATGTCATTTTCATCGCTTGTCCTACTAGACAAT
CTCCTATAACTCGAGTTACACAAAGTGCTGATTCAGCAGTATTTGTATCT
GTCATATCCTCTCTGCTACACTTTAACTTTGCTTTTGTCATTTCGGTTTT
TAAAGATCTGTTCACAAATTTGTAAGCTTTTAAAGTGTCATTCCCCGTAT
CTTGGTCCACATTGTAACTTATTTTGCATTCAAGTGCAGAAGATCTCCCA
TCAGATGTTACAATCTCACTGAACAAAGATGTGAATCTAAATTTTGACAC
GTTAAATCGTTTGAATTCTGAACAGCAAGGTACTGGAGTCAGTAGAAATG
ATTTTGATACAAACAAAGGTTGATCAAAAACTTCTAGAATAACAACTTCC
CCTTTTTCAGCTTTTCCAACAACTTGACCCATCTGCGTCTGTTTTGTCTA
TTTGTCTGAAATTAGAACATCTTGAATTGTATTGAGCTGACACAATAAAA
GAAACGAAACTAAATATTAAATACAACAACGATAAAAGAAAGAACTAATA
TATTAAGTGGGGAGACAGTGACTCGGCTGCATAAAAGCTGAGTTACTCCC
AAGCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033202XLOC_033202Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052505-exon-scaffold_216-1575043694:78134..78188TCONS_00052505-exon-scaffold_216-1575043694:78134..78188Clytia hemisphaericaexon
TCONS_00052505-exon-scaffold_216-1575043694:76332..77215TCONS_00052505-exon-scaffold_216-1575043694:76332..77215Clytia hemisphaericaexon
TCONS_00052505-exon-scaffold_216-1510915933:78134..78188TCONS_00052505-exon-scaffold_216-1510915933:78134..78188Clytia hemisphaericaexon
TCONS_00052505-exon-scaffold_216-1510915933:76332..77215TCONS_00052505-exon-scaffold_216-1510915933:76332..77215Clytia hemisphaericaexon
TCONS_00052505-exon-scaffold_216-1491911889:78134..78188TCONS_00052505-exon-scaffold_216-1491911889:78134..78188Clytia hemisphaericaexon
TCONS_00052505-exon-scaffold_216-1491911889:76332..77215TCONS_00052505-exon-scaffold_216-1491911889:76332..77215Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_216supercontigscaffold_216:76332..78188 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.777594	0.379138	0.275135	0.161506	4.65329	2.64129	9.37238	7.66289	2.49819	3.19587	1.92028	1.58599	1.907	1.30911	1.62819	1.53999	0.766155	0.860073	2.99643	2.10838	1.36268	0.550069	1.72743	2.17841	1.46102	1.11765	1.79927	1.4224	0.323651	0.219833
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052505 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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