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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052531 ID=TCONS_00052531|Name=TCONS_00052531|organism=Clytia hemisphaerica|type=transcript|length=1022bp
CATAAGTCCTCCATGCCAgcaaaaaacaatgataaagatTCATGCCCAAG
AAAACGTTTTGTGAAACAAAGATGCTACTTTTCCCTTGGTTATCCTGTTT
GTATGTTCTTATCCTTACTGGCACGGCTTACGGACGGCAAAAACAAGGCG
AACTGACATTAACGGATGTTCGCCGAGACCAGAAGCTAGTCTCTAAACCA
ATTGCATCCATCCCTGTTAGCAAAAGGAGTCCAGTGTCCTGTTTAACACA
TTGTTTGGCGCGTGGTGGCAAAGCATTTAATGTTAATTTGGAAAAGGGTA
TTTGTGAGATTTTGGGAGAATCCAAAATGGACGATGATAGTTTAGACATG
AAAGAGGAAAAAGGTTGGACATACTATGGACCAAAAAAGCGAACTCCAAC
AGAGGACTATGAAGATTGTTACAAAGTGACGTCATTGATCAATCAAAAGG
AACATTGTTGTCCCAAAGGACGGAACGGAGACAGGTGCCAGTACCAAGCC
ACCTGCGCTCACAAATACTATGGTGCATGTCATGGCACAAACGATCTGGA
AATTTCAACTTCAAGGAAAAAGTTTTTAGGAAGTTTCTCATCAACTCACG
ACTGCTTTCAACAATGCAAAATCCACACCTCAAAAAGCCCTGATGGTGCA
GCATGCGAATCATTGGAGACTGTAAACGGCCACGATTGTTACGTCATTCC
AAGAGGAGCCAAATATGGAAAAGCGACTATAACACACGGAGCTTATTACG
CGAATTGTTGGGTATTCACTAAATGTGATGCAGGGAACAAAAGTAaattt
caatacaccttttcgaccgtaaccaccaattgccacgcgggcatttcttg
tccgctttatcccactaaaaccgtctcagtccttttttcgcacctataga
caatagaaaaatgtttcaaaaaaggattggatcgagtttagggggatgat
taaataattaagtggcacgcgcctgaccgcgcgactacggtcgaaaaggt
gtatacacTTTTCTCTAAATCC Run BLAST on NCBI transcript from alignment at scaffold_217:117243..123274- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052531 ID=TCONS_00052531|Name=TCONS_00052531|organism=Clytia hemisphaerica|type=transcript|length=6032bp|location=Sequence derived from alignment at scaffold_217:117243..123274- (Clytia hemisphaerica)
CATAAGTCCTCCATGCCAGCAAAAAACAATGATAAAGATTCATGCCCAAG
AAAACGTTTTGTGAAACAAAGATGCTACTTTTCCCTTGGTTATCCTGTTT
GTATGTTCTTATCCTTACTGGCACGGCTTACGGACGGCAAAAACAAGGCG
AACTGACATTAACGGATGTTCGCCGAGACCAGAAGCTAGTCTCTAAACCA
ATTGCATCCATCCCTGTTAGCAAAAGGAGTCCAGTGTCCTGTTTAACACA
TTGTTTGGCGCGTGGTGGCAAAGCATTTAATGTTAATTTGGAAAAGGGTA
TTTGTGAGATTTTGGGAGAATCCAAAATGGACGATGATAGTTTAGACATG
AAAGAGGAAAAAGGTTGGACATACTATGGACCAAAAAAGCGAACTCCAAC
AGAGGTTTGTACAGCAGATGAAAAAAAAATTTTGTTACTAACTTTGTTCT
ATTTGTCATATTTAAAATACTCTATGGCAATTCACTTAGTGATGAGTTTA
AAAATATCCGTTGACATTGGGTCTGTTTATATAACTACCCATCATAAAAT
GTTCAGCCCGGGTTAGTTTACTAAGCGAACTAACTAACATGAACTACAAA
AAAATTAGCCTAGGATCAACTTTTTTACGATAGCGCGATTAAGTATAACT
CGGAAGTTCCTCAAGAGGAGAATTTTCCGCGGGGATTTAATTTGGCGGAT
GGTTTCAGAAATTAAAATAAGCGGAAATTAAATTTGACGGATGAAGGATA
TTTTTGGTCAAAAAACGCTTTAATATAAGAAAAATACTGTTTTAAAGCCT
GAAATGACAAACAATTGGGGAATGAATAAATACTACAATTTAAATTTTGC
GTGAATTTAATTTTGCAGGCGATGTGAAAAATTAAATTTAGCGGGAACTT
TATTTGGCAGATTTTAATTAGCTAAATCAGCCAAATTTTCTTTCCGTCAA
AATTTCTTCCTTAAGTTTGCAAGAGTAGAAGAGCGTATCTCACGTATAAA
GTAACATATAGAACCTCCTACGGCAATGAATTTTGAACATTCCGAAGATA
TCGGGTCTGTGTACAGACCATCTCTTATCACATTTTTAAACTCTTTGAAA
CTCCATTAATTTTTTAAGATTTCGAATTTTGGTGATTTTCTTTCAAAATA
GTTGCCACAAGGTCTACTTAAATCAAAACTATCAGACAGGGAAGTTCATT
CTGAAGTAGATTTTCACTTTAAGTTAAAGATTTATTCTGCGCATTTCTAA
TTCTACACAGGACTATGAAGATTGTTACAAAGTGACGTCATTGATCAATC
AAAAGGAACATTGTTGTCCCAAAGGACGGAACGGAGACAGGTGCCAGTAC
CAAGGTATAGTATGACAAAATGGTAATCATGACATTCATGACGTAATGTA
TTCTACGGTTGTTGCCAGAGGTGGCAGGTTTTGAACAATTTTTCTCTAGT
TTAAATTTACCCCATTCTGGCAAAAAAAACGAGTTGCTTCCGTGAAAATC
GTTCTGAATATCACGAATTTAGCGGCCCTCACTTCAAACTCAACCCCCAG
TAATTAAACTACTACTTAATAGTGGTGCCAACAAAAGCTAAAACTCACAA
AGTAATATTTTGTTCATTTTTATGAATTACCTCGACTCGGGATTTCGACA
CAAGGGTTTTAGATTGCCCACGTACATTTGTTGAAGCCTACTAAGTAAGC
ATAAGAACAGGAATTCTAAAAAGTCATACAATTTAAAAACAACCTCCACG
TGTTGCCTTAAATATTCTATTCTGAATTCTGCAAAACATTGAAAAAAAAA
AAATCTTTCTTATTTCACAGCCACCTGCGCTCACAAATACTATGGTGCAT
GTCATGGCACAAACGATCTGGAAATTTCAACTTCAAGGAAAAAGTTTTTA
GGAAGTTTCTCATCAACTCACGACTGCTTTCAACAATGCAAAATGTAAGT
GTTTAAATTATTAATTCGAACACGGAAAAGTACTGCCGACCAAGGAACTT
TTAAGATTGTTGATGATAAACTTTGATTTTTACTCCAGGTAACTAATTTT
CGCGGCAACTAATCTTCGCATTTTTGAGTGTCTACCACAAAAATTAGTTC
CGCGAAATGTATTTTTGCTAAAAATTCTCAAAAACCCCTGAATAGGAATA
TGAAAGAATTTCAGCAAAAAGTAAGTGTCGATCGCGAAAATTAGTTGCAC
TAAATGGGCCAATTTAGTACCCTCGCACCGGGAAAATCAGTCCCCTTAAA
GTATTAAAGAGGGCTAAGTTAAAACATGTTTTATTGAAATCTTCAACCTC
AGAANAAAGTATTAAAGAGGGCTAAGTTAAAACATGTTTTATTCAAATCT
TCAACCTCAGAATTGCATTGTCTTTAGTTTTCAAGCATCCTGGAATCTCA
TTACATACTGTCAAGTCCGGCAAAGAAATACACCAGCAATAACTGTATCT
AAACATATGTCCCTTTTTTTACATTTTTTAAAAACTTTCCGTAGTATCTA
TACACGAACATAAGGCTTCGTTGGCCAAAATACTAAGAACAAGTTAAGAA
CATGTTAAAAAACTTTTAGGCTGAAAAAGTTAACAACATCCGAAAGCTTC
AAAATTTTTGGATGTTCTTATAAAAAAACACGTAATCATTTCTACAAATT
TATTATCTTCTTTCTAAACCTTGCAGCCCGGAAGAGGGGTGGGGCTGTTG
GTTTGTAGACCGACGTAATAATGTGGCCAAAAAATCGGCGCTTTGAAAAC
GACCCTTAAAGGCTTTCAATGCAGTGACTTTCCCTTAAATGGATAAATTT
TTTGCAAGCAAAATATTTTCGCGACACAAACTTTTTTTTAAATAATATAA
TTTTCGTGGGCCTCTTTTTCAACTAATATTTTGTCTCATTTTCCTAGGGG
TTTTTGAAAAATTTCGGAAAAACTCGCGAAACTTACGAAATCATTGCATA
AATTAATCCACTTGGTTACATAGTCAAATTATTCATTTTGCCTGACCACT
CCATAGGCTTTTTAGTCACGTGATTTCTAACTTGAAAAAGAGGCTCCTCC
GAAACTATTAACAGGTTTTTGGATTAGTATATGTAATCACATGATAACGA
GTGCAATTCGAGAATAATTGCACGAGTGACTTTTTTGTTATTAATTTTCC
GAGTCCGAAAGGACGAGGTAAATTCGAAACAAAAAAATCACGAGTGCAAT
TTTCGAATTGTACGANACGAGGAAAATTTGAAACAAAAAAATCACGAGTG
CAATTTTCGAATTGTACGAGTTATTATGTGATTACGAGCTAATCGCACAA
TTTTTTCACTACTTTTACCCCGTCAGGAAAGTAAATTACACTGAAAGTTT
TACATTTTTCTCTTATCTTTATGTTTTTTTTTTATTGTTTGCTTAAAGAT
TTTCTTTCTCAAAAAATGAATTTCGAATGCAATTTTAAAAGATTCGATAA
AAACATGTAAGAAAAAACATTAAAGTCAATTTTGTAAACATTGGCGCCTC
ATTGAAGAGTGTGATTAACGATTAATTGCTCTCTACAGAATGCAATTAAC
GATTAATTGCTCTCTTTGAAGGCGCGCCAAAGAAGAAAAAATAACTCATC
GTGCGATTACTGCTATAAATTTATTCATTCTTTGCCACGGAAAGTCATGT
GATATGCTTTTCAACCAATAGGATTTAATTACTGCGAGGGGAAAACAAAC
AAACACTATAAATTTATTCATAGGGTTGCTAGGCTTTTTGTATCCTGATT
TCCCCCAATTCAAGTTTTATTTTAAATTATATATGACTTATGATATATTT
ATGACGTTAGCATGTAGTGTTTTATGACAGAAAAGATGTTCACTTTCTTC
TTTTCTCTCATCAATGTCAATATGTAACAAAAACTTTGACCATGTGACAG
CTTCAGTATAAACAAGATAAAACTTAATCCGAAAAATTGATTTTGTCATG
GATCTATGTGTCAAGTCGGATCACAGGCAACAAAATTTTCATTTTTTGAA
AAACTTATTCACTCCTTTTTTTATAAGCACAACGTTTATAAGCTGTAAGC
ATACTTCGATTAGAAAGCATACATCCAACCTGAAATTCAAAAAAATTCGT
GCAGCTATTTTAAAACGCTGACCTTTTTAGGGTTATTTTTAAAGCTGTTT
GAGCTTTCTTAGGCCAAAGATTTTCGCCTGCGGAGCCAAATTACAAAGAA
AACTTTCATTCTTCGAGCCGAATCAATGTTCCGACTTAAAAATTCGAATT
TTTCATGAACCCAAAGAAAATCAACAAATCTAAACATATCAATAAACATA
AATGAAGAGTGAAAATATACCAAAATTGTAGTCTATACCCATAAAGACAC
TACATTCAGATAAATGGTGTGTATGTGTGATGTTTTTACATGCTTTTTTT
ATAAGAACATCCAAAACTTTCGAGGCCTTGGGATGTTCTTATCTTTGTGA
GATTTAAGCCTGAAACTTTCAAAGCCTTATGTTCTTAACTTGTTCCTTAT
ATAGCATGTATAGAACTTTAGAATCATAGTCCGTATAAAAAGCCCTGGTA
TGGAAGCCTATTGTTGTAGCTTTTTGTTAACTTTTTTCTTTGTTAATAAC
GATTATAAAAATCGATCTGCTCAGTTTTCGATCACGTTACCAAGTACTCC
TCTTGGGATTGGTTTAAGATTTAATCACATGATTAACAAGTGATACTTTT
ATGGACCTACCTGGTTATGCATTTAACACATATATAATTGATATCTACAT
GAGCGTGACCATTAAACAATCATTCAGAACACAAATAGTGACAATCTATT
AAAATTAGTCGTTTGTTTCTTATAAAAAAACGTTTCGAAACCAAAATTTC
ATGCTCTTGAAATATTTTTTCATATTCAAGACTTCGAGAGCAAGTATCTC
ATCAAAAAATTCAGTAATTTCAAGAACATTGATGTATGCTTATTAATAGT
GATTCTTATAGATAAAGATGCGTCTTTTGAGCTGAAAAATTCTTTTTTTA
CAAAGATCTGCTTGAGCCATCTTTTACCTACTTTTCATGCAAAAAGTCAG
AAAAAAACAATGATCCAATATTTCACAAAATCCAAAAAGACCTTTTTTAG
CCGTTTTTTAGCTGAAATTTACCCCCAAATTTTTTTTCCAAAAATCGAGT
TCCGCCACATTCGATGGTTTATAGTTATGCATCTTTGTGCAAAAAATCAT
AAAGAATAAAAGAGCCAATCTCGAGAAAAGCTAATACCTAAGTAATTGAT
AATGTGCCATCTTTTACCTATGATGGTACCCTACTTTCATGCAAAAAATC
AGAACAAATTAATGATCTAATTTTTCACAAAGTCCAAAAAGCCCGTTTTT
TAGCCGTTTTTTGGCCCAAATTTGCCCATTTTTTTTTTCGAAAATCGGGC
TCCGTCACATTCGAGGGTTTATAGTTATGCATCTTTGTACAAAAAATCAG
CAAAAACTAATGAGCCAATCATGAGGAAAGCTAATAACGAACGAACGGAC
AAAGGTTAATTTATAGGACCTCCACCGGGGTAGGTCCAAAAAGTGGGCAA
AACAAGATAATTTCTCTTATCGTTTCTTAAACGGACTATGATAGAACATG
AAAGATTTTTAATTTATCTTCATATTTCACAGCCACACCTCAAAAAGCCC
TGATGGTGCAGCATGCGAATCATTGGAGACTGTAAACGGCCACGATTGTT
ACGTCATTCCAAGAGGAGCCAAATATGGAAAAGCGACTATAACACACGGA
GCTTATTACGCGAATTGTTGGGTATTCACTAAATGTGATGCAGGGAACAA
AAGTAAATTTCAATACACCTTTTCGACCGTAACCACCAATTGCCACGCGG
GCATTTCTTGTCCGCTTTATCCCACTAAAACCGTCTCAGTCCTTTTTTCG
CACCTATAGACAATAGAAAAATGTTTCAAAAAAGGATTGGATCGAGTTTA
GGGGGATGATTAAATAATTAAGTGGCACGCGCCTGACCGCGCGACTACGG
TCGAAAAGGTGTATACACTTTTCTCTAAATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052531-exon-scaffold_217-1575043694:122871..123274 | TCONS_00052531-exon-scaffold_217-1575043694:122871..123274 | Clytia hemisphaerica | exon |
| TCONS_00052531-exon-scaffold_217-1575043694:121921..122014 | TCONS_00052531-exon-scaffold_217-1575043694:121921..122014 | Clytia hemisphaerica | exon |
| TCONS_00052531-exon-scaffold_217-1575043694:121331..121454 | TCONS_00052531-exon-scaffold_217-1575043694:121331..121454 | Clytia hemisphaerica | exon |
| TCONS_00052531-exon-scaffold_217-1575043694:117243..117642 | TCONS_00052531-exon-scaffold_217-1575043694:117243..117642 | Clytia hemisphaerica | exon |
| TCONS_00052531-exon-scaffold_217-1510915933:122871..123274 | TCONS_00052531-exon-scaffold_217-1510915933:122871..123274 | Clytia hemisphaerica | exon |
| TCONS_00052531-exon-scaffold_217-1510915933:121921..122014 | TCONS_00052531-exon-scaffold_217-1510915933:121921..122014 | Clytia hemisphaerica | exon |
| TCONS_00052531-exon-scaffold_217-1510915933:121331..121454 | TCONS_00052531-exon-scaffold_217-1510915933:121331..121454 | Clytia hemisphaerica | exon |
| TCONS_00052531-exon-scaffold_217-1510915933:117243..117642 | TCONS_00052531-exon-scaffold_217-1510915933:117243..117642 | Clytia hemisphaerica | exon |
| TCONS_00052531-exon-scaffold_217-1491911889:122871..123274 | TCONS_00052531-exon-scaffold_217-1491911889:122871..123274 | Clytia hemisphaerica | exon |
| TCONS_00052531-exon-scaffold_217-1491911889:121921..122014 | TCONS_00052531-exon-scaffold_217-1491911889:121921..122014 | Clytia hemisphaerica | exon |
| TCONS_00052531-exon-scaffold_217-1491911889:121331..121454 | TCONS_00052531-exon-scaffold_217-1491911889:121331..121454 | Clytia hemisphaerica | exon |
| TCONS_00052531-exon-scaffold_217-1491911889:117243..117642 | TCONS_00052531-exon-scaffold_217-1491911889:117243..117642 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_217 | supercontig | scaffold_217:117243..123274 - |
Blast
The following BLAST results are available for this feature:
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