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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052534 ID=TCONS_00052534|Name=TCONS_00052534|organism=Clytia hemisphaerica|type=transcript|length=3048bp
AGAAAACGCGGAAATTATTGTCATTTGGTATTTTGAAACATGTATAATTC
TAAATCGAATCTATATCTTGGAGTCATTCCACTTGTTTATTCGTATTAGA
TAGGCTGGTCATTTAAAAGCAACGCAGAAGGAGGAGGCTAGACCTCTGAA
GCATTGTTGAAGCTAAAATTCGGATGACTTTTgatatggaaatttcaaaa
cctTATTTATatgttttgatcattttgtttGGTGGAATAGCAAGCTTTGC
AGAGGGTTTTGATTctttccaaatttcaagaataccAACAAATCAAGAAA
TCAACACACAATCAGCAAGTTATCCAAATGGCACTGACAACCATAATCTG
AATCATACAACCACCTTTAAGAACACAACTAATAGAAGCAATCTCTCTGC
TAGTTCATCTTTAGTTGGCAACGTCTCATTTTCctcaaatcaaaattcaa
catCTGTAATCGACAGCAATTCAACCTACATCATTCTAATTCTCCAAAAC
TCCACAGAATTGAACATAACTGATCCAGACACAACCCAGAGAGAATCTAC
CATCgtaatcaaaaaaaatatcacgacATTCCCAGTTGTGCTGAATATTA
CCTTACCAATCATCATCTCTGGCAACTTATCCGTGCTTACCAATGAAAGC
ATATCCATCAACTCTCCCCTGAGGAATGACACCAATTCAACATCCACAGT
GACCACTAAAACCTTTCAACCTGGACCAACACTTTACAATCGAAACACTA
CCAGGTCAAATACGCCCGCAAATACGTCACAACGTCTAAAATCAATCATT
GCAAAGCCTCCAAGGATCGTTATCAAACTAGGTCAATCCTCCTTATCAGA
TGTTTGCTTGCAACTAAATATTCCAAAAGAACGCTGCAAATGTCCTGATT
TGGGACAGCTCTGTCTCTTTTTCAAAGACGACAAACGCGTAGAGAAAATC
CTAGTCTGTTCAAAAGCACATAAAGTTAAAACCTACAGCATTATCGTCAT
ATGTTCaattggtatcattggaaatcTATTATGCCTATTCGTGACAATGG
TTAATGAGAAAAATACAATCTGTCGTAAGGTTATAGGCATGTTGGCATTT
GCTGATTTGGTTTTCTCTTGCTTGCAGCTTACAGTTGTTGTTCCAGGCAT
CTGGTCATGCCAGTGAGAATATAACGACCATGTCTGCAAGTTTTTATATT
CGATCATTAACTCAACAGCAATCATGGCTTTAGGCTTCATCTTGATCATA
TCAATGGAACGTTTTAATGGGATCGtaaaacctttcatgaatcAAAGTTC
CAACGCTAAAATCACTATTATGTCGGTCGTCAATGTTTCCCTTGCGCTCT
TATTCGTCGTACCAACTATCATTGTATCGAAAGTCGAACATATTGATAAT
GCAGCACTTTGCAAAGAACAATGGCCCGACAAGAGGTATTCCTTATATTA
TTCCTGGTTCTTAATGATCGTAACTTTCATCATCCCGATCGTTGCTATCA
CATTCTTATACATGGGGATCGTAAAGAGTCTtcgaaaatcacaaaatcac
acGCGTAAAACGTTCAGTCTTAAAGAGCAATCCCGACGTCGTAAAGAAGA
TGGTAAAATCACAATGATCATATCGTATCTTTTGATCAGCTTTGCAGTCC
TCGTATCACCGAATCGTATTGTATGGGTACTTTACGATcatgatattttt
aaaagtgtATCTGCCGATACACTAGCCTATATCCGTATGGCAGCCCTTGT
TCCGTACACCATTCACGCCTGTATCAACCCCATAATTTACAGTCTAGTCG
ATAAGAAATTCCGTGGAAATCtgaaatatattttcttaaGAGTTACATGT
CAAAAGAGATCAGCAGTCCATGTTAAGAATAAGCATAAAGGTTCATTTAA
CCATTCAGAGAGAGATACAAGTCTTTCAAAAATCACCAAATCAACCATTC
GCAAAACATCCGCCAGCCTCCCACCACCACCACCCTATGAATCCGCCAAT
ACGTCAGCTATCAAACTTGACAGTAATACTCAGTAATATAATAGTAATAC
TCAACACATTGACAAACTAAATTAATTAATACAACGAATTGATATCAATT
TTGCTGTAGTTTGATACTGGTTAATTAGAGTTCAATCCTCTTTTCAGCAG
TATCTGGAAGGAAGTAAATGGTAGATGATTTTCTAACCCTGAATCATCCT
TATTGACCAATGAAATGTGTGCTATATAAGATCTATAATACTCGATGACT
CAAAGGGCTTACAACCATAAAAGGCCCTTATATTTTGATAATAACTAATA
ATAACATGTATACGAAGTCTTTCGTGGTTTGGTTATTGAGATATTTAAGT
CAGATATTGATAATattgacgatttttttctgtTCGGAGTTTGTActgaa
acaaaactttttaaagataCTAACCAATGAAGAACTAGCATATTTGTGTG
GCCTTACGTTTTATTACAGTTGTTAAGATTATAATTGATATGAGTATTAC
TTTCTCTTTTCGAACTGAGAACACACCCTTGTGTACAGACCCGCTGGaag
cccagccccactggaaaatctggcaaaaatttcgtccctggtaagaaaat
accctggaatttcagccccactgggaaattgtcTTAGATTTCATATCCAA
TCCAatcgaaattaaatgtttaaaaattgcactccaaaatcatccccacg
ataaaatttctattcccatttGGATTTCAATATGATTTTTTATTCCCGCT
GAGGAGAagagttccaccggggctgtgagacaggggtgtgagaACTGTCG
AACACTACATGATATTGTTTGGTATGTTGGGCTTTATAATATTTTGAACA
TATAAGAGGGTGACGCACCCATCTGAGAGGTTAGCTATTCAAAATAACAA
TTTATTATTTGAAATATATCATTTGTTATACAAGCAATTTAGAAAAAAGC
ACAATAGAATTAATATAATTAAAAATATCCATGATTTAAATCTAGTTtta
tgataaaatttctattaaaaCTCAATTATGTTTACCTTGGGAATACAG Run BLAST on NCBI protein sequence of TCONS_00052534-protein >TCONS_00052534-protein ID=TCONS_00052534-protein|Name=TCONS_00052534-protein|organism=Clytia hemisphaerica|type=polypeptide|length=330bp
MTFDMEISKPYLYVLIILFGGIASFAEGFDSFQISRIPTNQEINTQSASY
PNGTDNHNLNHTTTFKNTTNRSNLSASSSLVGNVSFSSNQNSTSVIDSNS
TYIILILQNSTELNITDPDTTQRESTIVIKKNITTFPVVLNITLPIIISG
NLSVLTNESISINSPLRNDTNSTSTVTTKTFQPGPTLYNRNTTRSNTPAN
TSQRLKSIIAKPPRIVIKLGQSSLSDVCLQLNIPKERCKCPDLGQLCLFF
KDDKRVEKILVCSKAHKVKTYSIIVICSIGIIGNLLCLFVTMVNEKNTIC
RKVIGMLAFADLVFSCLQLTVVVPGIWSCQ Run BLAST on NCBI transcript from alignment at scaffold_217:168050..171631- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052534 ID=TCONS_00052534|Name=TCONS_00052534|organism=Clytia hemisphaerica|type=transcript|length=3582bp|location=Sequence derived from alignment at scaffold_217:168050..171631- (Clytia hemisphaerica)
AGAAAACGCGGAAATTATTGTCATTTGGTATTTTGAAACATGTATAATTC
TAAATCGAATCTATATCTTGGAGTCATTCCACTTGTTTATTCGTATTAGA
TAGGCTGGTCATTTAAAAGCAACGCAGAAGGAGGAGGCTAGACCTCTGAA
GCATTGTTGAAGCTAAAATTCGGATGACTTTTGATATGGAAATTTCAAAA
CCTTATTTATATGTTTTGATCATTTTGTTTGGTGGAATAGCAAGCTTTGC
AGAGGTTTTTGATTCTTTCCAANATCATTTTGTTTGGTGGAATAGCAAGC
TTTGCAGAGGGTTTTGATTCTTTCCAAATTTCAAGAATACCAACAAATCA
AGAAATCAACACACAATCAGCAAGTTATCCAAATGGCACTGACAACCATA
ATCTGAATCATACAACCACCTTTAAGAACACAACTAATAGAAGCAATCTC
TCTGCTAGTTCATCTTTAGTTGGCAACGTCTCATTTTCCTCAAATCAAAA
TTCAACATCTGTAATCGACAGCAATTCAACCTACATCATTCTAATTCTCC
AAAACTCCACAGAATTGAACATAACTGATCCAGACACAACCCAGAGAGAA
TCTACCATCGTAATCAAAAAAAATATCACGACATTCCCAGTTGTGCTGAA
TATTACCTTACCAATCATCATCTCTGGCAACTTATCCGTGCTTACCAATG
AAAGCATATCCATCAACTCTCCCCTGAGGAATGACACCAATTCAACATCC
ACAGTGACCACTAAAACCTTTCAACCTGGACCAACACTTTACAATCGAAA
CACTACCAGGTCAAATACGCCCGCAAATACGTCACAACGTCTAAAATCAA
TCATTGCAAAGCCTCCAAGGATCGTTATCAAACTAGGTCAATCCTCCTTA
TCAGATGTTTGCTTGCAACTAAATATTCCAAAAGAACGCTGCAAATGTCC
TGATTTGGGACAGCTCTGTCTCTTTTTCAAAGACGACAAACGCGTAGAGA
AAATCCTAGTCTGTTCAAAAGCACATAAAGTTAAAACCTACAGCATTATC
GTCATATGTTCAATTGGTATCATTGGAAATCTATTATGCCTATTCGTGAC
AATGGTTAATGAGAAAAATACAATCTGTCGTAAGGTTATAGGCATGTTGG
CATTTGCTGATTTGGTTTTCTCTTGCTTGCAGCTTACAGTTGTTGTTCCA
GGCATCTGGTCTTGCCNTCGTAAGGTTATAGGCATGTTGGCATTTGCTGA
TTTGGTTTTCTCTTGCTTGCAGCTTACAGTTGTTGTTCCAGGCATCTGGT
CATGCCAGTGAGAATATAACGACCATGTCTGCAAGTTTTTATATTCGATC
ATTAACTCAACAGCAATCATGGCTTTAGGCTTCATCTTGATCATATCAAT
GGAACGTTTTAATGGGATCGTAAAACCTTTCATGAATCAAAGTTCCAACG
CTAAAATCACTATTATGTCGGTCGTCAATGTTTCCCTTGCGCTCTTATTC
GTCGTACCAACTATCATTGTATCGAAAGTCGAACATATTGATAATGCAGC
ACTTTGCAAAGAACAATGGCCCGACAAGAGGTAAGTGATCTTACTTTGGT
CAAGACTGTGCTTTAGAAAAGTCTATGCTAAAGACAAGGCTAGATTGTAT
TTCAGATAAGACTTTGGTGTATGCTATGCTATGCAGCAATCTCGTTCTCA
GAGGGTTCTCGCGGGTTCAACCCCCGGCCAGACCGAAGCAAAGACTTTGT
ACGGAGCACAAAAAAGGTGATTGATATTTTTCTGTTTAATGCTCAGCAAT
TGAGAGAAGAATCAAGGGTAGGTGGAGCAATTCTGGAAGAAAGAGTGGCG
CCCTTTAAGCAGATAGCTATCGAAAGGGAGCCTTCTGGTCGTTTCCACCT
GTCGTTACAGACTTACTTAAAAAGAGTCATTCTTAACCATAAACTCTTTA
TTCATTCTATTTCTTTTAGGTATTCCTTATATTATTCCTGGTTCTTAATG
ATCGTAACTTTCATCATCCCGATCGTTGCTATCACATTCTTATACATGGG
GATCGTAAAGAGTCTTCGAAAATCACAAAATCACACGCGTAAAACGTTCA
GTCTTAAAGAGCAATCCCGACGTCGTAAAGAAGATGGTAAAATCACAATG
ATCATATCGTATCTTTTGATCAGCTTTGCAGTCCTCGTATCACCGAATCG
TATTGTATGGGTACTTTACGATCATGATATTTTTAAAAGTGTATCTGCCG
ATACACTAGCCTATATCCGTATGGCAGCCCTTGTTCCGTACACCATTCAC
GCCTGTATCAACCCCATAATTTACAGTCTAGTCGATAAGAAATTCCGTGG
AAATCTGAAATATATTTTCTTAAGAGTTACATGTCAAAAGAGATCAGCAG
TCCATGTTAAGAATAAGCATAAAGGTTCATTTAACCATTCAGAGAGAGAT
ACAAGTCTTTCAAAAATCACCAAATCAACCATTCGCAAAACATCCGCCAG
CCTCCCACCACCACCACCCTATGAATCCGCCAATACGTCAGCTATCAAAC
TTGACAGTAATACTCAGTAATATAATAGTAATACTCAACACATTGACAAA
CTAAATTAATTAATACAACGAATTGATATCAATTTTGCTGTAGTTTGATA
CTGGTTAATTAGAGTTCAATCCTCTTTTCAGCAGTATCTGGAAGGAAGTA
AATGGTAGATGATTTTCTAACCCTGAATCATCCTTATTGACCAATGAAAT
GTGTGCTATATAAGATCTATAATACTCGATGACTCAAAGGGCTTACAACC
ATAAAAGGCCCTTATATTTTGATAATAACTAATAATAACATGTATACGAA
GTCTTTCGTGGTTTGGTTATTGAGATATTTAAGTCAGATATTGATAATAT
TGACGATTTTTTTCTGTTCGGAGTTTGTACTGAAACAAAACTTTTTAAAG
ATACTAACCAATGAAGAACTAGCATATTTGTGTGGCCTTACGTTTTATTA
CAGTTGTTAAGATTATAATTGATATGAGTATTACTTTCTCTTTTCGAACT
GAGAACACACCCTTGTGTACAGACCCGCTGGAAGCCCAGCCCCACTGGAA
AATCTGGCAAAAATTTCGTCCCTGGTAAGAAAATACCCTGGAATTTCAGC
CCCACTGGGAAATTGTCTTAGATTTCATATCCAATCCAATCGAAATTAAA
TGTTTAAAAATTGCACTCCAAAATCATCCCCACGATAAAATTTCTATTCC
CATTTGGATTTCAATATGATTTTTTATTCCCGCTGAGGAGAAGAGTTCCA
CCGGGGCTGTGAGACAGGGGTGTGAGAACTGTCGAACACTACATGATATT
GTTTGGTATGTTGGGCTTTATAATATTTTGAACATATAAGAGGGTGACGC
ACCCATCTGAGAGGTTAGCTATTCAAAATAACAATTTATTATTTGAAATA
TATCATTTGTTATACAAGCAATTTAGAAAAAAGCACAATAGAATTAATAT
AATTAAAAATATCCATGATTTAAATCTAGTTTTATGATAAAATTTCTATT
AAAACTCAATTATGTTTACCTTGGGAATACAG Coding sequence (CDS) from alignment at scaffold_217:168050..171631- >TCONS_00052534 ID=TCONS_00052534|Name=TCONS_00052534|organism=Clytia hemisphaerica|type=CDS|length=2979bp|location=Sequence derived from alignment at scaffold_217:168050..171631- (Clytia hemisphaerica)
GCATCTGGTCATGCCAGTGAGGTTTTGATTCTTTCCAAATTTCAAGAATA
CCAACAAATCAAGAAATCAACACACAATCAGCAAGTTATCCAAATGGCAC
TGACAACCATAATCTGAATCATACAACCACCTTTAAGAACACAACTAATA
GAAGCAATCTCTCTGCTAGTTCATCTTTAGTTGGCAACGTCTCATTTTCC
TCAAATCAAAATTCAACATCTGTAATCGACAGCAATTCAACCTACATCAT
TCTAATTCTCCAAAACTCCACAGAATTGAACATAACTGATCCAGACACAA
CCCAGAGAGAATCTACCATCGTAATCAAAAAAAATATCACGACATTCCCA
GTTGTGCTGAATATTACCTTACCAATCATCATCTCTGGCAACTTATCCGT
GCTTACCAATGAAAGCATATCCATCAACTCTCCCCTGAGGAATGACACCA
ATTCAACATCCACAGTGACCACTAAAACCTTTCAACCTGGACCAACACTT
TACAATCGAAACACTACCAGGTCAAATACGCCCGCAAATACGTCACAACG
TCTAAAATCAATCATTGCAAAGCCTCCAAGGATCGTTATCAAACTAGGTC
AATCCTCCTTATCAGATGTTTGCTTGCAACTAAATATTCCAAAAGAACGC
TGCAAATGTCCTGATTTGGGACAGCTCTGTCTCTTTTTCAAAGACGACAA
ACGCGTAGAGAAAATCCTAGTCTGTTCAAAAGCACATAAAGTTAAAACCT
ACAGCATTATCGTCATATGTTCAATTGGTATCATTGGAAATCTATTATGC
CTATTCGTGACAATGGTTAATGAGAAAAATACAATCTGTCGTAAGGTTAT
AGGCATGTTGGCATTTGCTGATTTGGTTTTCTCTTGCTTGCAGCTTACAG
TTGTTGTTCCAGATGACTTTTGATATGGAAATTTCAAAACCTTATTTATA
TGTTTTGATCATTTTGTTTGGTGGAATAGCAAGCTTTGCAGAGGCATCTG
GTCATGCCAGTGAGGTTTTGATTCTTTCCAAATTTCAAGAATACCAACAA
ATCAAGAAATCAACACACAATCAGCAAGTTATCCAAATGGCACTGACAAC
CATAATCTGAATCATACAACCACCTTTAAGAACACAACTAATAGAAGCAA
TCTCTCTGCTAGTTCATCTTTAGTTGGCAACGTCTCATTTTCCTCAAATC
AAAATTCAACATCTGTAATCGACAGCAATTCAACCTACATCATTCTAATT
CTCCAAAACTCCACAGAATTGAACATAACTGATCCAGACACAACCCAGAG
AGAATCTACCATCGTAATCAAAAAAAATATCACGACATTCCCAGTTGTGC
TGAATATTACCTTACCAATCATCATCTCTGGCAACTTATCCGTGCTTACC
AATGAAAGCATATCCATCAACTCTCCCCTGAGGAATGACACCAATTCAAC
ATCCACAGTGACCACTAAAACCTTTCAACCTGGACCAACACTTTACAATC
GAAACACTACCAGGTCAAATACGCCCGCAAATACGTCACAACGTCTAAAA
TCAATCATTGCAAAGCCTCCAAGGATCGTTATCAAACTAGGTCAATCCTC
CTTATCAGATGTTTGCTTGCAACTAAATATTCCAAAAGAACGCTGCAAAT
GTCCTGATTTGGGACAGCTCTGTCTCTTTTTCAAAGACGACAAACGCGTA
GAGAAAATCCTAGTCTGTTCAAAAGCACATAAAGTTAAAACCTACAGCAT
TATCGTCATATGTTCAATTGGTATCATTGGAAATCTATTATGCCTATTCG
TGACAATGGTTAATGAGAAAAATACAATCTGTCGTAAGGTTATAGGCATG
TTGGCATTTGCTGATTTGGTTTTCTCTTGCTTGCAGCTTACAGTTGTTGT
TCCAGATGACTTTTGATATGGAAATTTCAAAACCTTATTTATATGTTTTG
ATCATTTTGTTTGGTGGAATAGCAAGCTTTGCAGAGGCATCTGGTCATGC
CAGTGAGGTTTTGATTCTTTCCAAATTTCAAGAATACCAACAAATCAAGA
AATCAACACACAATCAGCAAGTTATCCAAATGGCACTGACAACCATAATC
TGAATCATACAACCACCTTTAAGAACACAACTAATAGAAGCAATCTCTCT
GCTAGTTCATCTTTAGTTGGCAACGTCTCATTTTCCTCAAATCAAAATTC
AACATCTGTAATCGACAGCAATTCAACCTACATCATTCTAATTCTCCAAA
ACTCCACAGAATTGAACATAACTGATCCAGACACAACCCAGAGAGAATCT
ACCATCGTAATCAAAAAAAATATCACGACATTCCCAGTTGTGCTGAATAT
TACCTTACCAATCATCATCTCTGGCAACTTATCCGTGCTTACCAATGAAA
GCATATCCATCAACTCTCCCCTGAGGAATGACACCAATTCAACATCCACA
GTGACCACTAAAACCTTTCAACCTGGACCAACACTTTACAATCGAAACAC
TACCAGGTCAAATACGCCCGCAAATACGTCACAACGTCTAAAATCAATCA
TTGCAAAGCCTCCAAGGATCGTTATCAAACTAGGTCAATCCTCCTTATCA
GATGTTTGCTTGCAACTAAATATTCCAAAAGAACGCTGCAAATGTCCTGA
TTTGGGACAGCTCTGTCTCTTTTTCAAAGACGACAAACGCGTAGAGAAAA
TCCTAGTCTGTTCAAAAGCACATAAAGTTAAAACCTACAGCATTATCGTC
ATATGTTCAATTGGTATCATTGGAAATCTATTATGCCTATTCGTGACAAT
GGTTAATGAGAAAAATACAATCTGTCGTAAGGTTATAGGCATGTTGGCAT
TTGCTGATTTGGTTTTCTCTTGCTTGCAGCTTACAGTTGTTGTTCCAGAT
GACTTTTGATATGGAAATTTCAAAACCTTATTTATATGTTTTGATCATTT
TGTTTGGTGGAATAGCAAGCTTTGCAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00052534-exon-scaffold_217-1575043694:171378..171631 | TCONS_00052534-exon-scaffold_217-1575043694:171378..171631 | Clytia hemisphaerica | exon |
| TCONS_00052534-exon-scaffold_217-1575043694:170431..171322 | TCONS_00052534-exon-scaffold_217-1575043694:170431..171322 | Clytia hemisphaerica | exon |
| TCONS_00052534-exon-scaffold_217-1575043694:170052..170340 | TCONS_00052534-exon-scaffold_217-1575043694:170052..170340 | Clytia hemisphaerica | exon |
| TCONS_00052534-exon-scaffold_217-1575043694:168050..169662 | TCONS_00052534-exon-scaffold_217-1575043694:168050..169662 | Clytia hemisphaerica | exon |
| TCONS_00052534-exon-scaffold_217-1510915933:171378..171631 | TCONS_00052534-exon-scaffold_217-1510915933:171378..171631 | Clytia hemisphaerica | exon |
| TCONS_00052534-exon-scaffold_217-1510915933:170431..171322 | TCONS_00052534-exon-scaffold_217-1510915933:170431..171322 | Clytia hemisphaerica | exon |
| TCONS_00052534-exon-scaffold_217-1510915933:170052..170340 | TCONS_00052534-exon-scaffold_217-1510915933:170052..170340 | Clytia hemisphaerica | exon |
| TCONS_00052534-exon-scaffold_217-1510915933:168050..169662 | TCONS_00052534-exon-scaffold_217-1510915933:168050..169662 | Clytia hemisphaerica | exon |
| TCONS_00052534-exon-scaffold_217-1491911889:171378..171631 | TCONS_00052534-exon-scaffold_217-1491911889:171378..171631 | Clytia hemisphaerica | exon |
| TCONS_00052534-exon-scaffold_217-1491911889:170431..171322 | TCONS_00052534-exon-scaffold_217-1491911889:170431..171322 | Clytia hemisphaerica | exon |
| TCONS_00052534-exon-scaffold_217-1491911889:170052..170340 | TCONS_00052534-exon-scaffold_217-1491911889:170052..170340 | Clytia hemisphaerica | exon |
| TCONS_00052534-exon-scaffold_217-1491911889:168050..169662 | TCONS_00052534-exon-scaffold_217-1491911889:168050..169662 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_217 | supercontig | scaffold_217:168050..171631 - |
Blast
The following BLAST results are available for this feature:
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