TCONS_00052536 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00052536
Unique Name	TCONS_00052536
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1532

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_217:201186..205559-
coding sequence from alignment at scaffold_217:201186..205559-

transcript sequence

>TCONS_00052536 ID=TCONS_00052536|Name=TCONS_00052536|organism=Clytia hemisphaerica|type=transcript|length=1532bp
TGCATGTTGATGTACGTGATGTATACATGAGAAGACTAAATGAAATAAAA
ATGGTACCCCAACCCCATAAGATTACACGAAAGCGTATTGCTATCATAGG
CTGTGGACCAAGTGGAATGTCTATGTTGATAACTTTAGtgaaagcaaaac
aaaatggtGATCAGATTCCTGATATTGTATGTTTTGAGAAGCAATCTATA
ATGGGTGGACAATGGGTGTATGAATGGCAGACGGGCGTTGATGAATTTGG
AACGCCCGTTTATAATTGTATGTACGAAGCTTTGAGATTGAATAATGCAA
AAGAAGCCCAAGAATACCAGGATTACACTTTTGAcgagcacttcaaaaaa
ccgaTATCATCCTACCCTCCAAGACATTTGATTCACGACTACATCCTTGG
TCGAGCTAGAAAATACGATATCAAACGATTcgtgaaattttcaacatttg
taaAGCAAgtggtcaaaaatgaaaatggtgTCGGATTTTCGATCACTTAT
GAACATTTACCTACTCGAACATCAAGTCAAGAGTATTTTGATTACGTCAT
CGTAGCAAGTGGTTTATACACTACAGCGTTCTTTCCTGCATACCCTGGGA
TCGAGACATTTCCTGGTCGAGTTATTCATTCTAAAGATTTCCGAAGAAAT
GAAGAATTGATTCAGGTTCAGAAACTTTTGATCGTTGGAACGAGTTTCAG
TGCAATGGATATTGCTCAGTTTCATCAAAAGTTGAACAGTACTGCACACA
CTTATCTATCCTACCACAAAGATGCGCCTTCAATCGTATATCCTGAATCG
CCAAAAGTGCATAACATACCATGCTTGCTCAAAGTCTCGGGAAAAACTTG
CTATTTCAAAGATGGAAACAGCTTCGAATTCGATATGATAATTTTTGCAA
CGGGTTATCAAATCAATTTCCCCTTCCTGGAGCCTGATTTGAAATTAACT
GCCAAAAAACAATCTTTGATTTACAACGATCTTTACAAAGGTGTTTTCTT
GCAATCAGAACCCGATTTGTTATTTATAGGAATACTAATTCCGTCTTTTT
CTTTCGGGTTATATGATGCACAAGCATGGTTGATAAAAGAATTCCTTCTC
GGTAGATTCGATATACCAAATAGAGCTCAGCGACAACAGGAGATTGATTT
CTTGTGGGATAAATATCAGACTCTTGCAAAGGTAATGAAAGGTGACCGAA
GATTTGCATACGTGTTTCTAAAGTTCTACTACGAAGAACTGTTAAAGGAG
ACTCCGGGTCATCCTCAGTTTATCAACGAACTGATGGTCGACATGCAAGC
AAACAACAATGAACGAAGAGCTACGAATGCAATCACTTTCCGTGAAGATC
AATACGTTTCGACGTTCACAAATACTAAAGCAGCTTCTAGCACTTCTGGA
TAGCCAACTAAATTTGGTTTTATTGTCTACGTTGTTTGTCAAATTTCTAA
CTTCCCTAGGATTTGTACATTTGACCATTGTAGTAGCACGAAACTCTGAG
AAGTGTACTTTTTACTTACTGTTGCGatgaaa

Run BLAST on NCBI

protein sequence of TCONS_00052536-protein

>TCONS_00052536-protein ID=TCONS_00052536-protein|Name=TCONS_00052536-protein|organism=Clytia hemisphaerica|type=polypeptide|length=466bp
HVDVRDVYMRRLNEIKMVPQPHKITRKRIAIIGCGPSGMSMLITLVKAKQ
NGDQIPDIVCFEKQSIMGGQWVYEWQTGVDEFGTPVYNCMYEALRLNNAK
EAQEYQDYTFDEHFKKPISSYPPRHLIHDYILGRARKYDIKRFVKFSTFV
KQVVKNENGVGFSITYEHLPTRTSSQEYFDYVIVASGLYTTAFFPAYPGI
ETFPGRVIHSKDFRRNEELIQVQKLLIVGTSFSAMDIAQFHQKLNSTAHT
YLSYHKDAPSIVYPESPKVHNIPCLLKVSGKTCYFKDGNSFEFDMIIFAT
GYQINFPFLEPDLKLTAKKQSLIYNDLYKGVFLQSEPDLLFIGILIPSFS
FGLYDAQAWLIKEFLLGRFDIPNRAQRQQEIDFLWDKYQTLAKVMKGDRR
FAYVFLKFYYEELLKETPGHPQFINELMVDMQANNNERRATNAITFREDQ
YVSTFTNTKAASSTSG

Run BLAST on NCBI

transcript from alignment at scaffold_217:201186..205559-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00052536 ID=TCONS_00052536|Name=TCONS_00052536|organism=Clytia hemisphaerica|type=transcript|length=4374bp|location=Sequence derived from alignment at scaffold_217:201186..205559- (Clytia hemisphaerica)
TGCATGTTGATGTACGTGATGTATACATGAGAAGACTAAATGAAATGTAT
GTTTTGAATTTAAACTGTCTTTTCATCTCTGGTGAAATGGTACACGTTTT
TTTTATTAGAACACCTTAATTTCAGCCTCATATGCGCTCTTATATTGACA
TTCTTATTTGAAACCAAATATTTTAAGAAAAAAATTACGTTGAGGATAGA
CGTGAGGATGATGAACTCATCGAAAGGGAGCTGAAAGCTCTATTCGAAAA
TGGGTGATTTAAGGGTGAAATTAGGTATTCACTTATTGGAAAATATAAAG
TCGGATTCTCAGATGGAGACGAGGACTCGAAGGACTCTCTCTTTTCCCAG
GCTGGACATGTTCTTAAGATGTTCTAATTTTTTTGCCGAATTTTAGCCTC
AATGTTCTTATAAACTGGATTCTAATAAAAAAATCGTGTACTACCATTTC
TAGGAGTGTGAAATTGTCTTAAAAATGATTTCAAAATTACGAGTAAATGC
TTTCCCCAAGAAGCTGATCTATCTATTCTTTACTGTCGTTTTTTATAAGT
TTCCCATTTCACACTAAGATTCCTTTATTCCTTTGTCACTTTTCTAGACC
TGGACCTCGGGTAGTTGAAAAACNTTTTTTATAAGTTTCCCATTTCACAC
TAAGATTCCTTTATTCCTTTGTCACTTTTCTAGACCCGGACCTCGGGTAG
TTGAAAAATAAGCTTCAGAAAGTTAGACAGTTTTGTATGGGTAAGCACAA
GATTTTCCGTACCCTTAGAAACAAATCTTTTCCAATCTCACGTCGGTTAG
CTCGGGAAATATACCGCAGAAATACTTCGAAAAAGTAACAAGCATCTTAT
AGTGTGGAAATGGGAAACTTATAAAAAACGACGGTATGATCAATTTTCAA
CGTCTTTCTTGAAGAAAAATTTGCATTTGCGCATTTTCCCCTTTAAATTA
AATATCAGATGCACAAATAACAAATGCACAAATCCTATGAAATAGGCTAA
TACGTTCATTTTAAAGTTTGTTTTGATAGATATCTTATATTTCAATCAAC
AGAAAAATGGTACCCCAACCCCATAAGATTACACGAAAGCGTATTGCTAT
CATAGGCTGTGGACCAAGTGGAATGTCTATGTTGATAACTTTAGTGAAAG
CAAAACAAAATGGTGATCAGATTCCTGATATTGTATGTTTTGAGAAGCAA
TCTATAATGGGTGGACAATGGGTGTATGAATGGCAGACGGGCGTTGATGA
ATTTGGAACGCCCGTTTATAATTGTATGTACGAAGCTTTGAGATTGAATA
ATGCAAAAGAAGCCCAAGAATACCAGGTATTCCGTTCAACATCCTATCCA
GTCCCTTAGTCCATAAGAAAAGCATGGCAGTTAGAAATAGTTTTCAATTG
ATCTGTAAAAACAACCAATGTCAATTGAATACGATTTCGGCTGCAAATTC
CGGTAACTGTCATTTTTAAATAGCGAACCATTATGTTAACATCTTTATCG
TGGTCGGTCTTTCTTAATAAATCTAACATAAAAATTAAAAGAGTATATCC
TAGTAAGTGCGAGCGCAAACGCAAACCAATTCAGGAAATCAAACCGGAAA
GATCGGGAAATCTAGCCCGACTATCGCGATTGATCGGATTTACGCACAAT
TACAAATGAAAAACACTGATTTTAAGAAACTTCTTAACCGGAGTTTAATA
ATCCCTAATTTATTATTTTCTCTTTTATTTTACATATTCAGGCTTACAAA
TGTTATATTTCTTATGTTATATTTCTGCAGGATTACACTTTTGACGAGCA
CTTCAAAAAACCGATATCATCCTACCCTCCAAGACATTTGATTCACGACT
ACATCCTTGGTCGAGCTAGAAAATACGATATCAAACGATTCGTGAAATTT
TCAACATTTGTAAAGCAAGTGGTCAAAAATGAAAATGGTGTCGGATTTTC
GATCACTTATGAACATTTACCTACTCGAACATCAAGTCAAGAGTATTTTG
ATTACGTCATCGTAGCAAGTGGTTTATACACTACAGCGTTCTTTCCTGCA
TACCCTGGGATCGAGACATTTCCTGGTCGAGTTATTCATTCTAAAGATTT
CCGAAGAAATGAAGAATTGATTCAGGTTCAGAAACTTTTGATCGTTGGAA
CGAGTTTCAGTGCAATGGATATTGCTCAGTTTCATCAAAAGTTGAACAGT
ACTGCACACACTTATCTATCCTACCACAAAGATGCGCCTTCAATCGTATA
TCCTGAATCGCCAAAAGTGCATAACATACCATGCTTGCTCAAAGTCTCGG
GAAAAACTTGCTATTTCAAAGATGGAAACAGCTTCGAATTCGATATGATA
ATTTTTGCAACGGGTTATCAAATCAATTTCCCCTTCCTGGAGCCTGATTT
GAAATTAACTGCCAAAAAACAATCTTTGATTTACAACGATCTTTACAAAG
GTGTTTTCTTGCAATCAGAACCCGATTTGTTATTTATAGGAATACTAATT
CCGTCTTTTTCTTTCGGGTTATATGATGCACAAGCATGGTTGATAAAAGA
ATTCCTTCTCGGTAGATTCGATATACCAAATAGAGCTCAGCGACAACAGG
AGATTGATTTCTTGTGGGATAAATATCAGACTCTTGCAAAGGTAATGAAA
GGTGACCGAAGATTTGCATACGTGTTTCTAAAGTTCTACTACGAAGAACT
GTTAAAGGTAAACTGTTGTCTCTTGATCTATTTTTCAGATTTCTGTAGGA
ATCTGTCAAAAATACCTCAATATGAAAATCACAGAAAGATTTGCAATACC
CCTTTTCATAGACCCACTGGGACTCTTTCCCACTGGAGATATTGGCCAAT
GTCTTCAGCGGAAAACTAAACACCAACTTTTGTCCCCGCTGAAAATAATC
AAATAAACAAATCCTTACGGCTGCAAAATATTGTGTTATTTTTTCCACCC
CCGCTGAATTTCCTGACTTGAAAACAATAGAGCTCGAATACCCAGCCATA
AAGAAAATGGAGAATGTCACTCCCCATCTAGTTTTAGTCCATTATTTTTT
ACCCTAACTAGCTGAAAGAAGCCTACCGGGTTTGTGAGAAGGGGTGCTTT
GCAACAAACTTTCAGTACACATACTTTAATAGTATAATGCAAACCCTTTG
CACTGATTACATCAGGTGGAGTCACCAAAAAACAAAACAAAACACAGTCA
AATTGCTCCCGATGAGAAAACACCCTCAAATTTTAACACATCAGGGAAAC
ACACCCAGCTACCATTTCCACTGGGAGAGTTTTACTGGATTTTTGAGTTG
TAAGCGATAAAGGGATAAAGTTAGAAATTCCGGGATGTTAAAAAGTAAAC
ATTTTATCCCCTTTGAAATTTAACATCATAAAAGAAAAACAGGGTATTGG
TATTATAAAGTCTATTCTAAAGACTCTTTGATCCGAGAAATTTCACCAAA
ATATTTATTCAATATAAAGTTATGATACAAAGTTAATAAGTGATTGACCC
CAAAAAACAGCAGAAAACAGCCTTTTTAGACGTCAATCAGCTTATAACTT
TGTTTGATATTTTTTGACTGGATGATTATTTTTGAGAATTTTTTTCACAG
TGATGACGTTCGATGAGCAAGGATTCATTTCAGTGAAAATAATAGTTATA
GCACTTTTCTACAAGATCTTCATTTTTTTCTTCTTCATTTTCATCTTTAT
TTTTGGATTTTTTTTAAAGATTTTTTTTATTTCAAATTGCTCCACTCACT
AATATCTTTTCAATGATACCAAATTTATAAAGATTGAAGAATTCCTTCGA
AAGTTATAGGTAAAAGAAAAAAAGAGTGCACACTGATCGTGAACAGACTT
TAGAGATATAATGACATATTCGGCTCTAAAAGGCCCTAAAACCTTTTTGA
GAATAATTCACGAATTTCGAAATCGTACGAAAATGACAAAAAAATACCTT
TTATTTTAATTTTGGTGCAATTTGGCGAGAATTAATTTTGGCGAATGGCC
TACAAATAAAATTGTTGGTGAATATTTGGCCGAATTAGCCGAAATTTTTT
TCCGCCAAAATATTTTCTTTAATTTATATCTTATTTTAGGAGACTCCGGG
TCATCCTCAGTTTATCAACGAACTGATGGTCGACATGCAAGCAAACAACA
ATGAACGAAGAGCTACGAATGCAATCACTTTCCGTGAAGATCAATACGTT
TCGACGTTCACAAATACTAAAGCAGCTTCTAGCACTTCTGGATAGCCAAC
TAAATTTGGTTTTATTGTCTACGTTGTTTGTCAAATTTCTAACTTCCCTA
GGATTTGTACATTTGACCATTGTAGTAGCACGAAACTCTGAGAAGTGTAC
TTTTTACTTACTGTTGCGATGAAA

Coding sequence (CDS) from alignment at scaffold_217:201186..205559-

>TCONS_00052536 ID=TCONS_00052536|Name=TCONS_00052536|organism=Clytia hemisphaerica|type=CDS|length=5604bp|location=Sequence derived from alignment at scaffold_217:201186..205559- (Clytia hemisphaerica)
GAGACTCCGGGTCATCCTCAGTTTATCAACGAACTGATGGTCGACATGCA
AGCAAACAACAATGAACGAAGAGCTACGAATGCAATCACTTTCCGTGAAG
ATCAATACGTTTCGACGTTCACAAATACTAAAGCAGCTTCTAGCACTTCT
GGATAGGATTACACTTTTGACGAGCACTTCAAAAAACCGATATCATCCTA
CCCTCCAAGACATTTGATTCACGACTACATCCTTGGTCGAGCTAGAAAAT
ACGATATCAAACGATTCGTGAAATTTTCAACATTTGTAAAGCAAGTGGTC
AAAAATGAAAATGGTGTCGGATTTTCGATCACTTATGAACATTTACCTAC
TCGAACATCAAGTCAAGAGTATTTTGATTACGTCATCGTAGCAAGTGGTT
TATACACTACAGCGTTCTTTCCTGCATACCCTGGGATCGAGACATTTCCT
GGTCGAGTTATTCATTCTAAAGATTTCCGAAGAAATGAAGAATTGATTCA
GGTTCAGAAACTTTTGATCGTTGGAACGAGTTTCAGTGCAATGGATATTG
CTCAGTTTCATCAAAAGTTGAACAGTACTGCACACACTTATCTATCCTAC
CACAAAGATGCGCCTTCAATCGTATATCCTGAATCGCCAAAAGTGCATAA
CATACCATGCTTGCTCAAAGTCTCGGGAAAAACTTGCTATTTCAAAGATG
GAAACAGCTTCGAATTCGATATGATAATTTTTGCAACGGGTTATCAAATC
AATTTCCCCTTCCTGGAGCCTGATTTGAAATTAACTGCCAAAAAACAATC
TTTGATTTACAACGATCTTTACAAAGGTGTTTTCTTGCAATCAGAACCCG
ATTTGTTATTTATAGGAATACTAATTCCGTCTTTTTCTTTCGGGTTATAT
GATGCACAAGCATGGTTGATAAAAGAATTCCTTCTCGGTAGATTCGATAT
ACCAAATAGAGCTCAGCGACAACAGGAGATTGATTTCTTGTGGGATAAAT
ATCAGACTCTTGCAAAGGTAATGAAAGGTGACCGAAGATTTGCATACGTG
TTTCTAAAGTTCTACTACGAAGAACTGTTAAAGAAAAATGGTACCCCAAC
CCCATAAGATTACACGAAAGCGTATTGCTATCATAGGCTGTGGACCAAGT
GGAATGTCTATGTTGATAACTTTAGTGAAAGCAAAACAAAATGGTGATCA
GATTCCTGATATTGTATGTTTTGAGAAGCAATCTATAATGGGTGGACAAT
GGGTGTATGAATGGCAGACGGGCGTTGATGAATTTGGAACGCCCGTTTAT
AATTGTATGTACGAAGCTTTGAGATTGAATAATGCAAAAGAAGCCCAAGA
ATACCAGCATGTTGATGTACGTGATGTATACATGAGAAGACTAAATGAAA
TGAGACTCCGGGTCATCCTCAGTTTATCAACGAACTGATGGTCGACATGC
AAGCAAACAACAATGAACGAAGAGCTACGAATGCAATCACTTTCCGTGAA
GATCAATACGTTTCGACGTTCACAAATACTAAAGCAGCTTCTAGCACTTC
TGGATAGGATTACACTTTTGACGAGCACTTCAAAAAACCGATATCATCCT
ACCCTCCAAGACATTTGATTCACGACTACATCCTTGGTCGAGCTAGAAAA
TACGATATCAAACGATTCGTGAAATTTTCAACATTTGTAAAGCAAGTGGT
CAAAAATGAAAATGGTGTCGGATTTTCGATCACTTATGAACATTTACCTA
CTCGAACATCAAGTCAAGAGTATTTTGATTACGTCATCGTAGCAAGTGGT
TTATACACTACAGCGTTCTTTCCTGCATACCCTGGGATCGAGACATTTCC
TGGTCGAGTTATTCATTCTAAAGATTTCCGAAGAAATGAAGAATTGATTC
AGGTTCAGAAACTTTTGATCGTTGGAACGAGTTTCAGTGCAATGGATATT
GCTCAGTTTCATCAAAAGTTGAACAGTACTGCACACACTTATCTATCCTA
CCACAAAGATGCGCCTTCAATCGTATATCCTGAATCGCCAAAAGTGCATA
ACATACCATGCTTGCTCAAAGTCTCGGGAAAAACTTGCTATTTCAAAGAT
GGAAACAGCTTCGAATTCGATATGATAATTTTTGCAACGGGTTATCAAAT
CAATTTCCCCTTCCTGGAGCCTGATTTGAAATTAACTGCCAAAAAACAAT
CTTTGATTTACAACGATCTTTACAAAGGTGTTTTCTTGCAATCAGAACCC
GATTTGTTATTTATAGGAATACTAATTCCGTCTTTTTCTTTCGGGTTATA
TGATGCACAAGCATGGTTGATAAAAGAATTCCTTCTCGGTAGATTCGATA
TACCAAATAGAGCTCAGCGACAACAGGAGATTGATTTCTTGTGGGATAAA
TATCAGACTCTTGCAAAGGTAATGAAAGGTGACCGAAGATTTGCATACGT
GTTTCTAAAGTTCTACTACGAAGAACTGTTAAAGAAAAATGGTACCCCAA
CCCCATAAGATTACACGAAAGCGTATTGCTATCATAGGCTGTGGACCAAG
TGGAATGTCTATGTTGATAACTTTAGTGAAAGCAAAACAAAATGGTGATC
AGATTCCTGATATTGTATGTTTTGAGAAGCAATCTATAATGGGTGGACAA
TGGGTGTATGAATGGCAGACGGGCGTTGATGAATTTGGAACGCCCGTTTA
TAATTGTATGTACGAAGCTTTGAGATTGAATAATGCAAAAGAAGCCCAAG
AATACCAGCATGTTGATGTACGTGATGTATACATGAGAAGACTAAATGAA
ATGAGACTCCGGGTCATCCTCAGTTTATCAACGAACTGATGGTCGACATG
CAAGCAAACAACAATGAACGAAGAGCTACGAATGCAATCACTTTCCGTGA
AGATCAATACGTTTCGACGTTCACAAATACTAAAGCAGCTTCTAGCACTT
CTGGATAGGATTACACTTTTGACGAGCACTTCAAAAAACCGATATCATCC
TACCCTCCAAGACATTTGATTCACGACTACATCCTTGGTCGAGCTAGAAA
ATACGATATCAAACGATTCGTGAAATTTTCAACATTTGTAAAGCAAGTGG
TCAAAAATGAAAATGGTGTCGGATTTTCGATCACTTATGAACATTTACCT
ACTCGAACATCAAGTCAAGAGTATTTTGATTACGTCATCGTAGCAAGTGG
TTTATACACTACAGCGTTCTTTCCTGCATACCCTGGGATCGAGACATTTC
CTGGTCGAGTTATTCATTCTAAAGATTTCCGAAGAAATGAAGAATTGATT
CAGGTTCAGAAACTTTTGATCGTTGGAACGAGTTTCAGTGCAATGGATAT
TGCTCAGTTTCATCAAAAGTTGAACAGTACTGCACACACTTATCTATCCT
ACCACAAAGATGCGCCTTCAATCGTATATCCTGAATCGCCAAAAGTGCAT
AACATACCATGCTTGCTCAAAGTCTCGGGAAAAACTTGCTATTTCAAAGA
TGGAAACAGCTTCGAATTCGATATGATAATTTTTGCAACGGGTTATCAAA
TCAATTTCCCCTTCCTGGAGCCTGATTTGAAATTAACTGCCAAAAAACAA
TCTTTGATTTACAACGATCTTTACAAAGGTGTTTTCTTGCAATCAGAACC
CGATTTGTTATTTATAGGAATACTAATTCCGTCTTTTTCTTTCGGGTTAT
ATGATGCACAAGCATGGTTGATAAAAGAATTCCTTCTCGGTAGATTCGAT
ATACCAAATAGAGCTCAGCGACAACAGGAGATTGATTTCTTGTGGGATAA
ATATCAGACTCTTGCAAAGGTAATGAAAGGTGACCGAAGATTTGCATACG
TGTTTCTAAAGTTCTACTACGAAGAACTGTTAAAGAAAAATGGTACCCCA
ACCCCATAAGATTACACGAAAGCGTATTGCTATCATAGGCTGTGGACCAA
GTGGAATGTCTATGTTGATAACTTTAGTGAAAGCAAAACAAAATGGTGAT
CAGATTCCTGATATTGTATGTTTTGAGAAGCAATCTATAATGGGTGGACA
ATGGGTGTATGAATGGCAGACGGGCGTTGATGAATTTGGAACGCCCGTTT
ATAATTGTATGTACGAAGCTTTGAGATTGAATAATGCAAAAGAAGCCCAA
GAATACCAGCATGTTGATGTACGTGATGTATACATGAGAAGACTAAATGA
AATGAGACTCCGGGTCATCCTCAGTTTATCAACGAACTGATGGTCGACAT
GCAAGCAAACAACAATGAACGAAGAGCTACGAATGCAATCACTTTCCGTG
AAGATCAATACGTTTCGACGTTCACAAATACTAAAGCAGCTTCTAGCACT
TCTGGATAGGATTACACTTTTGACGAGCACTTCAAAAAACCGATATCATC
CTACCCTCCAAGACATTTGATTCACGACTACATCCTTGGTCGAGCTAGAA
AATACGATATCAAACGATTCGTGAAATTTTCAACATTTGTAAAGCAAGTG
GTCAAAAATGAAAATGGTGTCGGATTTTCGATCACTTATGAACATTTACC
TACTCGAACATCAAGTCAAGAGTATTTTGATTACGTCATCGTAGCAAGTG
GTTTATACACTACAGCGTTCTTTCCTGCATACCCTGGGATCGAGACATTT
CCTGGTCGAGTTATTCATTCTAAAGATTTCCGAAGAAATGAAGAATTGAT
TCAGGTTCAGAAACTTTTGATCGTTGGAACGAGTTTCAGTGCAATGGATA
TTGCTCAGTTTCATCAAAAGTTGAACAGTACTGCACACACTTATCTATCC
TACCACAAAGATGCGCCTTCAATCGTATATCCTGAATCGCCAAAAGTGCA
TAACATACCATGCTTGCTCAAAGTCTCGGGAAAAACTTGCTATTTCAAAG
ATGGAAACAGCTTCGAATTCGATATGATAATTTTTGCAACGGGTTATCAA
ATCAATTTCCCCTTCCTGGAGCCTGATTTGAAATTAACTGCCAAAAAACA
ATCTTTGATTTACAACGATCTTTACAAAGGTGTTTTCTTGCAATCAGAAC
CCGATTTGTTATTTATAGGAATACTAATTCCGTCTTTTTCTTTCGGGTTA
TATGATGCACAAGCATGGTTGATAAAAGAATTCCTTCTCGGTAGATTCGA
TATACCAAATAGAGCTCAGCGACAACAGGAGATTGATTTCTTGTGGGATA
AATATCAGACTCTTGCAAAGGTAATGAAAGGTGACCGAAGATTTGCATAC
GTGTTTCTAAAGTTCTACTACGAAGAACTGTTAAAGAAAAATGGTACCCC
AACCCCATAAGATTACACGAAAGCGTATTGCTATCATAGGCTGTGGACCA
AGTGGAATGTCTATGTTGATAACTTTAGTGAAAGCAAAACAAAATGGTGA
TCAGATTCCTGATATTGTATGTTTTGAGAAGCAATCTATAATGGGTGGAC
AATGGGTGTATGAATGGCAGACGGGCGTTGATGAATTTGGAACGCCCGTT
TATAATTGTATGTACGAAGCTTTGAGATTGAATAATGCAAAAGAAGCCCA
AGAATACCAGCATGTTGATGTACGTGATGTATACATGAGAAGACTAAATG
AAAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_033221	XLOC_033221	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00052536-exon-scaffold_217-1575043694:205514..205559	TCONS_00052536-exon-scaffold_217-1575043694:205514..205559	Clytia hemisphaerica	exon
TCONS_00052536-exon-scaffold_217-1575043694:204234..204507	TCONS_00052536-exon-scaffold_217-1575043694:204234..204507	Clytia hemisphaerica	exon
TCONS_00052536-exon-scaffold_217-1575043694:202853..203779	TCONS_00052536-exon-scaffold_217-1575043694:202853..203779	Clytia hemisphaerica	exon
TCONS_00052536-exon-scaffold_217-1575043694:201186..201470	TCONS_00052536-exon-scaffold_217-1575043694:201186..201470	Clytia hemisphaerica	exon
TCONS_00052536-exon-scaffold_217-1510915933:205514..205559	TCONS_00052536-exon-scaffold_217-1510915933:205514..205559	Clytia hemisphaerica	exon
TCONS_00052536-exon-scaffold_217-1510915933:204234..204507	TCONS_00052536-exon-scaffold_217-1510915933:204234..204507	Clytia hemisphaerica	exon
TCONS_00052536-exon-scaffold_217-1510915933:202853..203779	TCONS_00052536-exon-scaffold_217-1510915933:202853..203779	Clytia hemisphaerica	exon
TCONS_00052536-exon-scaffold_217-1510915933:201186..201470	TCONS_00052536-exon-scaffold_217-1510915933:201186..201470	Clytia hemisphaerica	exon
TCONS_00052536-exon-scaffold_217-1491911889:205514..205559	TCONS_00052536-exon-scaffold_217-1491911889:205514..205559	Clytia hemisphaerica	exon
TCONS_00052536-exon-scaffold_217-1491911889:204234..204507	TCONS_00052536-exon-scaffold_217-1491911889:204234..204507	Clytia hemisphaerica	exon
TCONS_00052536-exon-scaffold_217-1491911889:202853..203779	TCONS_00052536-exon-scaffold_217-1491911889:202853..203779	Clytia hemisphaerica	exon
TCONS_00052536-exon-scaffold_217-1491911889:201186..201470	TCONS_00052536-exon-scaffold_217-1491911889:201186..201470	Clytia hemisphaerica	exon

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00052536-protein	TCONS_00052536-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_217	supercontig	scaffold_217:201186..205559 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.606309	0	0	0	0	0	2.89492	4.23359	1.18503	0.847809	0	0.535254	0.739482	0	0.670357	0	0	0	1.49376	2.54338	0	2.03598	0	0

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR023753	FAD/NAD-binding_dom
IPR020946	Flavin_mOase-like

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016491	oxidoreductase activity
GO:0004499	N,N-dimethylaniline monooxygenase activity
GO:0050661	NADP binding
GO:0050660	flavin adenine dinucleotide binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0050660	flavin adenine dinucleotide binding
molecular_function	GO:0050661	NADP binding
molecular_function	GO:0004499	N,N-dimethylaniline monooxygenase activity
molecular_function	GO:0016491	oxidoreductase activity

Blast

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BLAST of TCONS_00052536 vs. Swiss-Prot (Human)
Match: FMO1 (Dimethylaniline monooxygenase [N-oxide-forming] 1 OS=Homo sapiens GN=FMO1 PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 4.328e-16
Identity = 59/216 (27.31%), Postives = 107/216 (49.54%), Query Frame = 3

Query:   81 KRIAIIGCGPSGMSMLITLVKAKQNGDQIPDIVCFEKQSIMGGQWVYEWQTGVDEFGTPVYNCMYEALRLNNAKEAQEYQDYTFDEHFKKPISSYPPRHLIHDYILGRARKYDIKRFVKFSTFVKQVVKNENGVGFSITYEHLPTRTSSQE--YFDYVIVASGLYTTAFFP--AYPGIETFPGRVIHSKDFRRNEELIQVQKLLIVGTSFSAMDIA 716
            KR+AI+G G SG++ +      K   ++  +  CFE+   +GG W +     V+E        +Y+++  N+ KE   Y D+ F E +     +Y P     +Y+   A  +D+ + ++F T V  V K  +    S  +E +      QE   FD V+V +G  T  + P  ++PGI  F G+  HS+ + ++ ++ + +++L++G   S  DIA
Sbjct:    3 KRVAIVGAGVSGLASI------KCCLEEGLEPTCFERSDDLGGLWRF--TEHVEEGRA----SLYKSVVSNSCKEMSCYSDFPFPEDY----PNYVPNSQFLEYLKMYANHFDLLKHIQFKTKVCSVTKCSDS-AVSGQWEVVTMHEEKQESAIFDAVMVCTGFLTNPYLPLDSFPGINAFKGQYFHSRQY-KHPDIFKDKRVLVIGMGNSGTDIA 200

The following BLAST results are available for this feature:

BLAST of TCONS_00052536 vs. Swiss-Prot (Human)

BLAST of TCONS_00052536 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FMO1	4.328e-16	27.31	Dimethylaniline monooxygenase [N-oxide-forming] 1 ...	[more]

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TCONS_00052536 (transcript) - C. hemisphaerica