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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052537 ID=TCONS_00052537|Name=TCONS_00052537|organism=Clytia hemisphaerica|type=transcript|length=1481bp
GTTGCATGTTGATGTACGTGATGTATACATGAGAAGACTAAATGAAATGC
TGTGGACCAAGTGGAATGTCTATGTTGATAACTTTAGtgaaagcaaaaca
aaatggtGATCAGATTCCTGATATTGTATGTTTTGAGAAGCAATCTATAA
TGGGTGGACAATGGGTGTATGAATGGCAGACGGGCGTTGATGAATTTGGA
ACGCCCGTTTATAATTGTATGTACGAAGCTTTGAGATTGAATAATGCAAA
AGAAGCCCAAGAATACCAGGATTACACTTTTGAcgagcacttcaaaaaac
cgaTATCATCCTACCCTCCAAGACATTTGATTCACGACTACATCCTTGGT
CGAGCTAGAAAATACGATATCAAACGATTcgtgaaattttcaacatttgt
aaAGCAAgtggtcaaaaatgaaaatggtgTCGGATTTTCGATCACTTATG
AACATTTACCTACTCGAACATCAAGTCAAGAGTATTTTGATTACGTCATC
GTAGCAAGTGGTTTATACACTACAGCGTTCTTTCCTGCATACCCTGGGAT
CGAGACATTTCCTGGTCGAGTTATTCATTCTAAAGATTTCCGAAGAAATG
AAGAATTGATTCAGGTTCAGAAACTTTTGATCGTTGGAACGAGTTTCAGT
GCAATGGATATTGCTCAGTTTCATCAAAAGTTGAACAGTACTGCACACAC
TTATCTATCCTACCACAAAGATGCGCCTTCAATCGTATATCCTGAATCGC
CAAAAGTGCATAACATACCATGCTTGCTCAAAGTCTCGGGAAAAACTTGC
TATTTCAAAGATGGAAACAGCTTCGAATTCGATATGATAATTTTTGCAAC
GGGTTATCAAATCAATTTCCCCTTCCTGGAGCCTGATTTGAAATTAACTG
CCAAAAAACAATCTTTGATTTACAACGATCTTTACAAAGGTGTTTTCTTG
CAATCAGAACCCGATTTGTTATTTATAGGAATACTAATTCCGTCTTTTTC
TTTCGGGTTATATGATGCACAAGCATGGTTGATAAAAGAATTCCTTCTCG
GTAGATTCGATATACCAAATAGAGCTCAGCGACAACAGGAGATTGATTTC
TTGTGGGATAAATATCAGACTCTTGCAAAGGTAATGAAAGGTGACCGAAG
ATTTGCATACGTGTTTCTAAAGTTCTACTACGAAGAACTGTTAAAGGAGA
CTCCGGGTCATCCTCAGTTTATCAACGAACTGATGGTCGACATGCAAGCA
AACAACAATGAACGAAGAGCTACGAATGCAATCACTTTCCGTGAAGATCA
ATACGTTTCGACGTTCACAAATACTAAAGCAGCTTCTAGCACTTCTGGAT
AGCCAACTAAATTTGGTTTTATTGTCTACGTTGTTTGTCAAATTTCTAAC
TTCCCTAGGATTTGTACATTTGACCATTGTAGTAGCACGAAACTCTGAGA
AGTGTACTTTTTACTTACTGTTGCGatgaaa Run BLAST on NCBI transcript from alignment at scaffold_217:201186..205561- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052537 ID=TCONS_00052537|Name=TCONS_00052537|organism=Clytia hemisphaerica|type=transcript|length=4376bp|location=Sequence derived from alignment at scaffold_217:201186..205561- (Clytia hemisphaerica)
GTTGCATGTTGATGTACGTGATGTATACATGAGAAGACTAAATGAAATGT
ATGTTTTGAATTTAAACTGTCTTTTCATCTCTGGTGAAATGGTACACGTT
TTTTTTATTAGAACACCTTAATTTCAGCCTCATATGCGCTCTTATATTGA
CATTCTTATTTGAAACCAAATATTTTAAGAAAAAAATTACGTTGAGGATA
GACGTGAGGATGATGAACTCATCGAAAGGGAGCTGAAAGCTCTATTCGAA
AATGGGTGATTTAAGGGTGAAATTAGGTATTCACTTATTGGAAAATATAA
AGTCGGATTCTCAGATGGAGACGAGGACTCGAAGGACTCTCTCTTTTCCC
AGGCTGGACATGTTCTTAAGATGTTCTAATTTTTTTGCCGAATTTTAGCC
TCAATGTTCTTATAAACTGGATTCTAATAAAAAAATCGTGTACTACCATT
TCTAGGAGTGTGAAATTGTCTTAAAAATGATTTCAAAATTACGAGTAAAT
GCTTTCCCCAAGAAGCTGATCTATCTATTCTTTACTGTCGTTTTTTATAA
GTTTCCCATTTCACACTAAGATTCCTTTATTCCTTTGTCACTTTTCTAGA
CCTGGACCTCGGGTAGTTGAAAAACNTTTTTTATAAGTTTCCCATTTCAC
ACTAAGATTCCTTTATTCCTTTGTCACTTTTCTAGACCCGGACCTCGGGT
AGTTGAAAAATAAGCTTCAGAAAGTTAGACAGTTTTGTATGGGTAAGCAC
AAGATTTTCCGTACCCTTAGAAACAAATCTTTTCCAATCTCACGTCGGTT
AGCTCGGGAAATATACCGCAGAAATACTTCGAAAAAGTAACAAGCATCTT
ATAGTGTGGAAATGGGAAACTTATAAAAAACGACGGTATGATCAATTTTC
AACGTCTTTCTTGAAGAAAAATTTGCATTTGCGCATTTTCCCCTTTAAAT
TAAATATCAGATGCACAAATAACAAATGCACAAATCCTATGAAATAGGCT
AATACGTTCATTTTAAAGTTTGTTTTGATAGATATCTTATATTTCAATCA
ACAGAAAAATGGTACCCCAACCCCATAAGATTACACGAAAGCGTATTGCT
ATCATAGGCTGTGGACCAAGTGGAATGTCTATGTTGATAACTTTAGTGAA
AGCAAAACAAAATGGTGATCAGATTCCTGATATTGTATGTTTTGAGAAGC
AATCTATAATGGGTGGACAATGGGTGTATGAATGGCAGACGGGCGTTGAT
GAATTTGGAACGCCCGTTTATAATTGTATGTACGAAGCTTTGAGATTGAA
TAATGCAAAAGAAGCCCAAGAATACCAGGTATTCCGTTCAACATCCTATC
CAGTCCCTTAGTCCATAAGAAAAGCATGGCAGTTAGAAATAGTTTTCAAT
TGATCTGTAAAAACAACCAATGTCAATTGAATACGATTTCGGCTGCAAAT
TCCGGTAACTGTCATTTTTAAATAGCGAACCATTATGTTAACATCTTTAT
CGTGGTCGGTCTTTCTTAATAAATCTAACATAAAAATTAAAAGAGTATAT
CCTAGTAAGTGCGAGCGCAAACGCAAACCAATTCAGGAAATCAAACCGGA
AAGATCGGGAAATCTAGCCCGACTATCGCGATTGATCGGATTTACGCACA
ATTACAAATGAAAAACACTGATTTTAAGAAACTTCTTAACCGGAGTTTAA
TAATCCCTAATTTATTATTTTCTCTTTTATTTTACATATTCAGGCTTACA
AATGTTATATTTCTTATGTTATATTTCTGCAGGATTACACTTTTGACGAG
CACTTCAAAAAACCGATATCATCCTACCCTCCAAGACATTTGATTCACGA
CTACATCCTTGGTCGAGCTAGAAAATACGATATCAAACGATTCGTGAAAT
TTTCAACATTTGTAAAGCAAGTGGTCAAAAATGAAAATGGTGTCGGATTT
TCGATCACTTATGAACATTTACCTACTCGAACATCAAGTCAAGAGTATTT
TGATTACGTCATCGTAGCAAGTGGTTTATACACTACAGCGTTCTTTCCTG
CATACCCTGGGATCGAGACATTTCCTGGTCGAGTTATTCATTCTAAAGAT
TTCCGAAGAAATGAAGAATTGATTCAGGTTCAGAAACTTTTGATCGTTGG
AACGAGTTTCAGTGCAATGGATATTGCTCAGTTTCATCAAAAGTTGAACA
GTACTGCACACACTTATCTATCCTACCACAAAGATGCGCCTTCAATCGTA
TATCCTGAATCGCCAAAAGTGCATAACATACCATGCTTGCTCAAAGTCTC
GGGAAAAACTTGCTATTTCAAAGATGGAAACAGCTTCGAATTCGATATGA
TAATTTTTGCAACGGGTTATCAAATCAATTTCCCCTTCCTGGAGCCTGAT
TTGAAATTAACTGCCAAAAAACAATCTTTGATTTACAACGATCTTTACAA
AGGTGTTTTCTTGCAATCAGAACCCGATTTGTTATTTATAGGAATACTAA
TTCCGTCTTTTTCTTTCGGGTTATATGATGCACAAGCATGGTTGATAAAA
GAATTCCTTCTCGGTAGATTCGATATACCAAATAGAGCTCAGCGACAACA
GGAGATTGATTTCTTGTGGGATAAATATCAGACTCTTGCAAAGGTAATGA
AAGGTGACCGAAGATTTGCATACGTGTTTCTAAAGTTCTACTACGAAGAA
CTGTTAAAGGTAAACTGTTGTCTCTTGATCTATTTTTCAGATTTCTGTAG
GAATCTGTCAAAAATACCTCAATATGAAAATCACAGAAAGATTTGCAATA
CCCCTTTTCATAGACCCACTGGGACTCTTTCCCACTGGAGATATTGGCCA
ATGTCTTCAGCGGAAAACTAAACACCAACTTTTGTCCCCGCTGAAAATAA
TCAAATAAACAAATCCTTACGGCTGCAAAATATTGTGTTATTTTTTCCAC
CCCCGCTGAATTTCCTGACTTGAAAACAATAGAGCTCGAATACCCAGCCA
TAAAGAAAATGGAGAATGTCACTCCCCATCTAGTTTTAGTCCATTATTTT
TTACCCTAACTAGCTGAAAGAAGCCTACCGGGTTTGTGAGAAGGGGTGCT
TTGCAACAAACTTTCAGTACACATACTTTAATAGTATAATGCAAACCCTT
TGCACTGATTACATCAGGTGGAGTCACCAAAAAACAAAACAAAACACAGT
CAAATTGCTCCCGATGAGAAAACACCCTCAAATTTTAACACATCAGGGAA
ACACACCCAGCTACCATTTCCACTGGGAGAGTTTTACTGGATTTTTGAGT
TGTAAGCGATAAAGGGATAAAGTTAGAAATTCCGGGATGTTAAAAAGTAA
ACATTTTATCCCCTTTGAAATTTAACATCATAAAAGAAAAACAGGGTATT
GGTATTATAAAGTCTATTCTAAAGACTCTTTGATCCGAGAAATTTCACCA
AAATATTTATTCAATATAAAGTTATGATACAAAGTTAATAAGTGATTGAC
CCCAAAAAACAGCAGAAAACAGCCTTTTTAGACGTCAATCAGCTTATAAC
TTTGTTTGATATTTTTTGACTGGATGATTATTTTTGAGAATTTTTTTCAC
AGTGATGACGTTCGATGAGCAAGGATTCATTTCAGTGAAAATAATAGTTA
TAGCACTTTTCTACAAGATCTTCATTTTTTTCTTCTTCATTTTCATCTTT
ATTTTTGGATTTTTTTTAAAGATTTTTTTTATTTCAAATTGCTCCACTCA
CTAATATCTTTTCAATGATACCAAATTTATAAAGATTGAAGAATTCCTTC
GAAAGTTATAGGTAAAAGAAAAAAAGAGTGCACACTGATCGTGAACAGAC
TTTAGAGATATAATGACATATTCGGCTCTAAAAGGCCCTAAAACCTTTTT
GAGAATAATTCACGAATTTCGAAATCGTACGAAAATGACAAAAAAATACC
TTTTATTTTAATTTTGGTGCAATTTGGCGAGAATTAATTTTGGCGAATGG
CCTACAAATAAAATTGTTGGTGAATATTTGGCCGAATTAGCCGAAATTTT
TTTCCGCCAAAATATTTTCTTTAATTTATATCTTATTTTAGGAGACTCCG
GGTCATCCTCAGTTTATCAACGAACTGATGGTCGACATGCAAGCAAACAA
CAATGAACGAAGAGCTACGAATGCAATCACTTTCCGTGAAGATCAATACG
TTTCGACGTTCACAAATACTAAAGCAGCTTCTAGCACTTCTGGATAGCCA
ACTAAATTTGGTTTTATTGTCTACGTTGTTTGTCAAATTTCTAACTTCCC
TAGGATTTGTACATTTGACCATTGTAGTAGCACGAAACTCTGAGAAGTGT
ACTTTTTACTTACTGTTGCGATGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052537-exon-scaffold_217-1575043694:205514..205561 | TCONS_00052537-exon-scaffold_217-1575043694:205514..205561 | Clytia hemisphaerica | exon |
| TCONS_00052537-exon-scaffold_217-1575043694:204234..204454 | TCONS_00052537-exon-scaffold_217-1575043694:204234..204454 | Clytia hemisphaerica | exon |
| TCONS_00052537-exon-scaffold_217-1575043694:202853..203779 | TCONS_00052537-exon-scaffold_217-1575043694:202853..203779 | Clytia hemisphaerica | exon |
| TCONS_00052537-exon-scaffold_217-1575043694:201186..201470 | TCONS_00052537-exon-scaffold_217-1575043694:201186..201470 | Clytia hemisphaerica | exon |
| TCONS_00052537-exon-scaffold_217-1510915933:205514..205561 | TCONS_00052537-exon-scaffold_217-1510915933:205514..205561 | Clytia hemisphaerica | exon |
| TCONS_00052537-exon-scaffold_217-1510915933:204234..204454 | TCONS_00052537-exon-scaffold_217-1510915933:204234..204454 | Clytia hemisphaerica | exon |
| TCONS_00052537-exon-scaffold_217-1510915933:202853..203779 | TCONS_00052537-exon-scaffold_217-1510915933:202853..203779 | Clytia hemisphaerica | exon |
| TCONS_00052537-exon-scaffold_217-1510915933:201186..201470 | TCONS_00052537-exon-scaffold_217-1510915933:201186..201470 | Clytia hemisphaerica | exon |
| TCONS_00052537-exon-scaffold_217-1491911889:205514..205561 | TCONS_00052537-exon-scaffold_217-1491911889:205514..205561 | Clytia hemisphaerica | exon |
| TCONS_00052537-exon-scaffold_217-1491911889:204234..204454 | TCONS_00052537-exon-scaffold_217-1491911889:204234..204454 | Clytia hemisphaerica | exon |
| TCONS_00052537-exon-scaffold_217-1491911889:202853..203779 | TCONS_00052537-exon-scaffold_217-1491911889:202853..203779 | Clytia hemisphaerica | exon |
| TCONS_00052537-exon-scaffold_217-1491911889:201186..201470 | TCONS_00052537-exon-scaffold_217-1491911889:201186..201470 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_217 | supercontig | scaffold_217:201186..205561 - |
Blast
The following BLAST results are available for this feature:
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