TCONS_00052541 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052541
Unique NameTCONS_00052541
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1816

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052541 ID=TCONS_00052541|Name=TCONS_00052541|organism=Clytia hemisphaerica|type=transcript|length=1816bp
TATAAATCTATATAAATTTACCTGTAAAAACGATATATAAAAATAATACG
ACACTGAATCATGTAAGTTTTATTGATGACAAATCGAATTTATCCAGATC
AACGTTTATAACGGAACGAATCAATGATTGAAGTGCCTTTGAGTGTGGCT
CATCCATTTCTAAAGCAGTCATCTCCTTTAAAGATTTGTCAAATTCTTCT
CCACAGGAAGAACGTAAAAGTATCAGATTTTGTGTCAACAGTTCATTTAG
TATCTTGTCATTTTTCAATATACCAGAGAATTTGATATCTAGGTATAGTT
TGGTATGAGTTTTCAACAGTTGTTTATGATGTCTTTTCAAAGCAATCCAA
CAGTGTCTAATCACCTTTTGATATGCATTTAAGACTAAAAGTCTAGTTTG
TTCTCCTTCAATATCAACAAATTGTGCTACAAATTGTAAAGCTTTGAAAA
GCGACTCAAGATGTTTCATGCAATTAGCACccatttcatttaaaaacatt
GGAAGATACTTCAAAAATAAGCGCCTTGTTTTGATACGATTTGAGAATTC
TAAATTATGTATAATTTTCTCTAGAGTTGTATCCCATAATGTCCAGTTTG
GATGCACAATATTccctttttccaaaatttgtaaCACTTTATTCAAGCAT
GGTAAAACAATTTCATACAGTCTATCACTATTTGAAAACAACTGTTGAAA
CAATGCATCGTAAATCACTTTACCATAATTATATAGATTCAAATCACTAG
CGGTAACATTATGCATGACATAGAGTAAGGTGCTAAATCCACATATCTTA
TTGTCTTCAACAAGGTCATCGACCATGAGCAATAGGAAGGGTATGAAATG
CGGCAAATATTCTCCCAAACATGGAAATGAGACTTTGGTCGCACACCAAA
TCAGTGAATGCTTCCAAGGAAGATTTTTACGCCAATTATCTTTGGTAAAC
ACCAGTGATAGCTTTTCCAATGCAAAACCAAATATTCCACGAGGAAACAA
AACATTACTGTTTTCAACATCTCCGGCAAAAAGTGATTTGACTGTTTCAT
GTTTGGTCACTTTGCAGATAAATTGAAGGATTTCGTTACATTCTTTTGTC
AGCTCATTTGTACACCATGAAAAATTACCAAGTCTACTGCTGATAAGAAG
CACCAAGTAAGGTGCCACTTTCTTCAATAAACGTTTCTGATATTTCAATA
TTGACTCAGAATCAACCTTCCTCTCAAATAAAATTGTTTTACAACATAGT
AAACACTGATAACTCAATTTAGGATTTAATTTATGGTTGGTTTCAAATTC
TTCATTGTCTGTAGAATCATGCTGAAGCTTCAAAGGATAACATACATCGG
GCAGTAAACAAAGTGTTGTCAGAATCTCAATAGTTTCTGCATCTGAATAT
GCTTCAAAATCAGTTACTGAAGTGTTAAAATTCTGATGCAAAGATACATT
GACTAATTTCACCACACAAGGATAATGTGGCCTAAGTTTGCTATTCAAAT
GTAGTGTCTCTAGAATTTGCTTTAAACTATCCTTTTCAATAATTCTTTCA
TGGGTATCGTCATTTATACAGTCATATATGCATTTACCATTAAGGCAACT
TTCTTTGATGAGATTAATTTCCATTGTTAACTAAATTAAACATAATCTAA
AGCTTTTTAAAACATTCCATGAAAAAATGTATGGCTGTTTACAAAAAAGA
ATACATATTGTGCGCCAAAAAAAGTCTCTCTCTTTGAAGTAAATCTTTTC
TCAAGATCCATGAATTTTTAATAGATGAATTCAATGTAAAGAGGatagat
aaacttaaattttaat
Run BLAST on NCBI

protein sequence of TCONS_00052541-protein

>TCONS_00052541-protein ID=TCONS_00052541-protein|Name=TCONS_00052541-protein|organism=Clytia hemisphaerica|type=polypeptide|length=521bp
MEINLIKESCLNGKCIYDCINDDTHERIIEKDSLKQILETLHLNSKLRPH
YPCVVKLVNVSLHQNFNTSVTDFEAYSDAETIEILTTLCLLPDVCYPLKL
QHDSTDNEEFETNHKLNPKLSYQCLLCCKTILFERKVDSESILKYQKRLL
KKVAPYLVLLISSRLGNFSWCTNELTKECNEILQFICKVTKHETVKSLFA
GDVENSNVLFPRGIFGFALEKLSLVFTKDNWRKNLPWKHSLIWCATKVSF
PCLGEYLPHFIPFLLLMVDDLVEDNKICGFSTLLYVMHNVTASDLNLYNY
GKVIYDALFQQLFSNSDRLYEIVLPCLNKVLQILEKGNIVHPNWTLWDTT
LEKIIHNLEFSNRIKTRRLFLKYLPMFLNEMGANCMKHLESLFKALQFVA
QFVDIEGEQTRLLVLNAYQKVIRHCWIALKRHHKQLLKTHTKLYLDIKFS
GILKNDKILNELLTQNLILLRSSCGEEFDKSLKEMTALEMDEPHSKALQS
LIRSVINVDLDKFDLSSIKLT
Run BLAST on NCBI

transcript from alignment at scaffold_217:90381..92196

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052541 ID=TCONS_00052541|Name=TCONS_00052541|organism=Clytia hemisphaerica|type=transcript|length=1816bp|location=Sequence derived from alignment at scaffold_217:90381..92196 (Clytia hemisphaerica)
attaaaatttaagtttatctatCCTCTTTACATTGAATTCATCTATTAAA
AATTCATGGATCTTGAGAAAAGATTTACTTCAAAGAGAGAGACTTTTTTT
GGCGCACAATATGTATTCTTTTTTGTAAACAGCCATACATTTTTTCATGG
AATGTTTTAAAAAGCTTTAGATTATGTTTAATTTAGTTAACAATGGAAAT
TAATCTCATCAAAGAAAGTTGCCTTAATGGTAAATGCATATATGACTGTA
TAAATGACGATACCCATGAAAGAATTATTGAAAAGGATAGTTTAAAGCAA
ATTCTAGAGACACTACATTTGAATAGCAAACTTAGGCCACATTATCCTTG
TGTGGTGAAATTAGTCAATGTATCTTTGCATCAGAATTTTAACACTTCAG
TAACTGATTTTGAAGCATATTCAGATGCAGAAACTATTGAGATTCTGACA
ACACTTTGTTTACTGCCCGATGTATGTTATCCTTTGAAGCTTCAGCATGA
TTCTACAGACAATGAAGAATTTGAAACCAACCATAAATTAAATCCTAAAT
TGAGTTATCAGTGTTTACTATGTTGTAAAACAATTTTATTTGAGAGGAAG
GTTGATTCTGAGTCAATATTGAAATATCAGAAACGTTTATTGAAGAAAGT
GGCACCTTACTTGGTGCTTCTTATCAGCAGTAGACTTGGTAATTTTTCAT
GGTGTACAAATGAGCTGACAAAAGAATGTAACGAAATCCTTCAATTTATC
TGCAAAGTGACCAAACATGAAACAGTCAAATCACTTTTTGCCGGAGATGT
TGAAAACAGTAATGTTTTGTTTCCTCGTGGAATATTTGGTTTTGCATTGG
AAAAGCTATCACTGGTGTTTACCAAAGATAATTGGCGTAAAAATCTTCCT
TGGAAGCATTCACTGATTTGGTGTGCGACCAAAGTCTCATTTCCATGTTT
GGGAGAATATTTGCCGCATTTCATACCCTTCCTATTGCTCATGGTCGATG
ACCTTGTTGAAGACAATAAGATATGTGGATTTAGCACCTTACTCTATGTC
ATGCATAATGTTACCGCTAGTGATTTGAATCTATATAATTATGGTAAAGT
GATTTACGATGCATTGTTTCAACAGTTGTTTTCAAATAGTGATAGACTGT
ATGAAATTGTTTTACCATGCTTGAATAAAGTGttacaaattttggaaaaa
gggAATATTGTGCATCCAAACTGGACATTATGGGATACAACTCTAGAGAA
AATTATACATAATTTAGAATTCTCAAATCGTATCAAAACAAGGCGCTTAT
TTTTGAAGTATCTTCCaatgtttttaaatgaaatggGTGCTAATTGCATG
AAACATCTTGAGTCGCTTTTCAAAGCTTTACAATTTGTAGCACAATTTGT
TGATATTGAAGGAGAACAAACTAGACTTTTAGTCTTAAATGCATATCAAA
AGGTGATTAGACACTGTTGGATTGCTTTGAAAAGACATCATAAACAACTG
TTGAAAACTCATACCAAACTATACCTAGATATCAAATTCTCTGGTATATT
GAAAAATGACAAGATACTAAATGAACTGTTGACACAAAATCTGATACTTT
TACGTTCTTCCTGTGGAGAAGAATTTGACAAATCTTTAAAGGAGATGACT
GCTTTAGAAATGGATGAGCCACACTCAAAGGCACTTCAATCATTGATTCG
TTCCGTTATAAACGTTGATCTGGATAAATTCGATTTGTCATCAATAAAAC
TTACATGATTCAGTGTCGTATTATTTTTATATATCGTTTTTACAGGTAAA
TTTATATAGATTTATA

Coding sequence (CDS) from alignment at scaffold_217:90381..92196

>TCONS_00052541 ID=TCONS_00052541|Name=TCONS_00052541|organism=Clytia hemisphaerica|type=CDS|length=1566bp|location=Sequence derived from alignment at scaffold_217:90381..92196 (Clytia hemisphaerica)
ATGGAAATTAATCTCATCAAAGAAAGTTGCCTTAATGGTAAATGCATATA
TGACTGTATAAATGACGATACCCATGAAAGAATTATTGAAAAGGATAGTT
TAAAGCAAATTCTAGAGACACTACATTTGAATAGCAAACTTAGGCCACAT
TATCCTTGTGTGGTGAAATTAGTCAATGTATCTTTGCATCAGAATTTTAA
CACTTCAGTAACTGATTTTGAAGCATATTCAGATGCAGAAACTATTGAGA
TTCTGACAACACTTTGTTTACTGCCCGATGTATGTTATCCTTTGAAGCTT
CAGCATGATTCTACAGACAATGAAGAATTTGAAACCAACCATAAATTAAA
TCCTAAATTGAGTTATCAGTGTTTACTATGTTGTAAAACAATTTTATTTG
AGAGGAAGGTTGATTCTGAGTCAATATTGAAATATCAGAAACGTTTATTG
AAGAAAGTGGCACCTTACTTGGTGCTTCTTATCAGCAGTAGACTTGGTAA
TTTTTCATGGTGTACAAATGAGCTGACAAAAGAATGTAACGAAATCCTTC
AATTTATCTGCAAAGTGACCAAACATGAAACAGTCAAATCACTTTTTGCC
GGAGATGTTGAAAACAGTAATGTTTTGTTTCCTCGTGGAATATTTGGTTT
TGCATTGGAAAAGCTATCACTGGTGTTTACCAAAGATAATTGGCGTAAAA
ATCTTCCTTGGAAGCATTCACTGATTTGGTGTGCGACCAAAGTCTCATTT
CCATGTTTGGGAGAATATTTGCCGCATTTCATACCCTTCCTATTGCTCAT
GGTCGATGACCTTGTTGAAGACAATAAGATATGTGGATTTAGCACCTTAC
TCTATGTCATGCATAATGTTACCGCTAGTGATTTGAATCTATATAATTAT
GGTAAAGTGATTTACGATGCATTGTTTCAACAGTTGTTTTCAAATAGTGA
TAGACTGTATGAAATTGTTTTACCATGCTTGAATAAAGTGttacaaattt
tggaaaaagggAATATTGTGCATCCAAACTGGACATTATGGGATACAACT
CTAGAGAAAATTATACATAATTTAGAATTCTCAAATCGTATCAAAACAAG
GCGCTTATTTTTGAAGTATCTTCCaatgtttttaaatgaaatggGTGCTA
ATTGCATGAAACATCTTGAGTCGCTTTTCAAAGCTTTACAATTTGTAGCA
CAATTTGTTGATATTGAAGGAGAACAAACTAGACTTTTAGTCTTAAATGC
ATATCAAAAGGTGATTAGACACTGTTGGATTGCTTTGAAAAGACATCATA
AACAACTGTTGAAAACTCATACCAAACTATACCTAGATATCAAATTCTCT
GGTATATTGAAAAATGACAAGATACTAAATGAACTGTTGACACAAAATCT
GATACTTTTACGTTCTTCCTGTGGAGAAGAATTTGACAAATCTTTAAAGG
AGATGACTGCTTTAGAAATGGATGAGCCACACTCAAAGGCACTTCAATCA
TTGATTCGTTCCGTTATAAACGTTGATCTGGATAAATTCGATTTGTCATC
AATAAAACTTACATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033225XLOC_033225Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052541-proteinTCONS_00052541-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052541-exon-scaffold_217-1491911889:90381..92196TCONS_00052541-exon-scaffold_217-1491911889:90381..92196Clytia hemisphaericaexon
TCONS_00052541-exon-scaffold_217-1510915933:90381..92196TCONS_00052541-exon-scaffold_217-1510915933:90381..92196Clytia hemisphaericaexon
TCONS_00052541-exon-scaffold_217-1575043694:90381..92196TCONS_00052541-exon-scaffold_217-1575043694:90381..92196Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_217supercontigscaffold_217:90381..92196 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.49311	8.58989	1.87475	1.00267	4.19786	2.65847	2.95188	2.71037	1.37669	1.49785	1.54332	1.04392	1.02779	1.12836	1.62969	2.12559	3.0826	1.85157	1.03261	0.933201	3.05238	2.15518	25.8446	21.8396	0.924421	2.22122	2.30067	2.42303	9.94852	12.4328
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR018870Tti2
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
Blast
[Close]
BLAST of TCONS_00052541 vs. Swiss-Prot (Human)
Match: TTI2 (TELO2-interacting protein 2 OS=Homo sapiens GN=TTI2 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.812e-28
Identity = 81/287 (28.22%), Postives = 137/287 (47.74%), Query Frame = -1 
Query:  347 YQKRLLKKVAPYLVLLISSRLGNFSWCTNELTKECNEILQFICKVTKHETVKSLFAGDVENSNVLFPRGIFGFALEKLSLVFTKDNWRKNLPWKHSLIWCATKVSFPCLGEYLPHFIPFLLLMVDDLVEDNKICGFSTLLYVMHNVTASDLNLYNYGKVIYDALFQQLFSNSDRLYEIVLPCLNKVLQILE-----KGNIVHPNWTLWDTTLEKIIHNLEFSNRIKTRRLFLKYLPMFLNEMGANCMKHLESLFKALQFVAQFVDIEGEQTRLLVLNAYQKVIRHCW 1192
            +Q  L     P  +  I+  L    W T    +   E+L  + +VT+  +V     G+ E+      +G     L  L     K++W+ N   KH   W   +V+ P L ++L   +P  L++ DD   +NKI G   L +++ NV A+DL  YN  +V+Y A+   L++    L + VL CL  +  ILE     KG+   P  T  D  L  I+ ++E  +R+  RR + + LP F+N +G   ++HL+ L + +    +  D   E+ RL +L   + +++H W
Sbjct:  139 WQTGLHHLAGPVYIFAITHSLEQ-PWTTPRSREVAREVLTSLLQVTECGSVAGFLHGENEDE-----KGRLSVILGLLKPDLYKESWKNNPAIKHVFSWTLQQVTRPWLSQHLERVLPASLVISDDYQTENKILGVHCLHHIVLNVPAADLLQYNRAQVLYHAISNHLYTPEHHLIQAVLLCLLDLFPILEKTLHWKGDGARPT-THCDEVLRLILTHMEPEHRLLLRRTYARNLPAFVNRLGILTVRHLKRLERVIIGYLEVYDGPEEEARLKILETLKLLMQHTW 418
The following BLAST results are available for this feature:
BLAST of TCONS_00052541 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TTI23.812e-2828.22TELO2-interacting protein 2 OS=Homo sapiens GN=TTI... [more]
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