TCONS_00052545 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052545
Unique NameTCONS_00052545
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length680

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052545 ID=TCONS_00052545|Name=TCONS_00052545|organism=Clytia hemisphaerica|type=transcript|length=680bp
ttcttataaaaaaagcgtaatCTCTGAAAATAATCTCTGGTGAAGAAGAA
TTCAGATTGAACATTGCATCCACAATCTAGACCAGCTTCGTTGACGGGAG
AACACTGTAATTGTTTATAAATCATCGAAATATTCACAGCAGAACTTACA
TACAATAAAAGGTGATTttccttttgtctttttttatcattaattACACT
GCCAgagtaatacacctttttgaccatagccgccaattgccacaCGGGCA
ttttttatcccactaaaatcgtcccagtcttttttcgcacttatagtaaa
tagaaaaaagtgtcaaaaaaggattggatcgagtttagggggataattaa
acaATTAAAGGACTCGTCAGTATAGTGCTGATACAGTCAACTTTCTCTAT
TTCGAACCTCtatcattcgaatctttctgcaaAAGATTTACCCCCTCAAC
ATGGGAAGTCGTATGAAATACTCTCCGCAATCCGAATCTCAGAAGAATTC
GAAGAGAATtattggtcccttgaagatcgaattagagagagtcaccTGTA
TACACAAATGATAAACGTTTTATGGATACAGGATTTAGTagttttagatt
ttcattttatgaaTGATTGTTTGTATGTGAACATAGTTAATTGTAACGTG
ATTAAAAAAGATTATGGAGctttaatgaaa
Run BLAST on NCBI

transcript from alignment at scaffold_217:178677..179356

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052545 ID=TCONS_00052545|Name=TCONS_00052545|organism=Clytia hemisphaerica|type=transcript|length=680bp|location=Sequence derived from alignment at scaffold_217:178677..179356 (Clytia hemisphaerica)
tttcattaaagCTCCATAATCTTTTTTAATCACGTTACAATTAACTATGT
TCACATACAAACAATCAttcataaaatgaaaatctaaaactACTAAATCC
TGTATCCATAAAACGTTTATCATTTGTGTATACAggtgactctctctaat
tcgatcttcaagggaccaataATTCTCTTCGAATTCTTCTGAGATTCGGA
TTGCGGAGAGTATTTCATACGACTTCCCATGTTGAGGGGGTAAATCTTtt
gcagaaagattcgaatgataGAGGTTCGAAATAGAGAAAGTTGACTGTAT
CAGCACTATACTGACGAGTCCTTTAATtgtttaattatccccctaaactc
gatccaatccttttttgacacttttttctatttactataagtgcgaaaaa
agactgggacgattttagtgggataaaaaaTGCCCGtgtggcaattggcg
gctatggtcaaaaaggtgtattactcTGGCAGTGTaattaatgataaaaa
aagacaaaaggaaAATCACCTTTTATTGTATGTAAGTTCTGCTGTGAATA
TTTCGATGATTTATAAACAATTACAGTGTTCTCCCGTCAACGAAGCTGGT
CTAGATTGTGGATGCAATGTTCAATCTGAATTCTTCTTCACCAGAGATTA
TTTTCAGAGattacgctttttttataagaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033229XLOC_033229Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052545-exon-scaffold_217-1491911889:178677..179356TCONS_00052545-exon-scaffold_217-1491911889:178677..179356Clytia hemisphaericaexon
TCONS_00052545-exon-scaffold_217-1510915933:178677..179356TCONS_00052545-exon-scaffold_217-1510915933:178677..179356Clytia hemisphaericaexon
TCONS_00052545-exon-scaffold_217-1575043694:178677..179356TCONS_00052545-exon-scaffold_217-1575043694:178677..179356Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_217supercontigscaffold_217:178677..179356 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0761414	0	0.085286	0.0864685	0.102855	0.170624	0.297796	0.185193	0.12901	0.0799503	0.156036	0.178446	0.254015	0.321159	0.0441584	0.0951693	0.116532	0.180926	2.00586	1.9596	0.343966	0.216318	0.259096	0.0785186	0	0.221738	0	0	0.340503	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052545 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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