TCONS_00052546 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052546
Unique NameTCONS_00052546
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length790

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052546 ID=TCONS_00052546|Name=TCONS_00052546|organism=Clytia hemisphaerica|type=transcript|length=790bp
GACCTCTTTCGCCCTAGCAAATCGGGATCATATTATTACCGAGCTCAACT
TCTCTAAAAATTCACGTGTAATGACCTTGAGTGACTGCTTATATATCTGG
CCGCCTTTCATTTAGAGATAATATGAAGCCGAGAGACATAGCTAGAAATG
GCTAAAACGACCtagcaaaatttctgaaaaaatcgggGTAATAGCTATGA
GGCTACGTACAGCTTCTCTGTCgagtttattaaaaaacaatacTCAATTC
ACATTTCCTAGCTTATCTCTTTCACAGTTTTTATTGAGAGAAGCTCAGTT
TCCAGAGCTGAAATTTGCTGAATCGACCCagttaacttttgaatttgatc
tgaaattttgtgaaagtcCAAGTAACTTTCACGTCTTAACTCTGATTTTA
TAGCTTTAATTCTTATGGATCGATTGCTAAGAATTGATCGTCAGGGTATT
AAGCATCAGCACCAGTTGTCACTGCTTTAAGTTGAACTAATAATGtttat
tttttaacaaaaatgaagcatttttcaaagtcttttaaaactttgttttt
taccTGCTTTTTGGTTGTTGTTGTGAGCGGAGATGAATATATTAGAATGA
TTTGACACCATTTAATTACCTcctattcaattcaaaacataaaaaataat
tttagggaTATAAAGGCCTATAAACTCAActccccggggggtactaggat
tgatgggtgtcgggtatgtgcgtgccagacctctggacccttacccttag
agagactgaattttggtgaaaaggtgacccttagagagNA
Run BLAST on NCBI

transcript from alignment at scaffold_217:231225..232014

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052546 ID=TCONS_00052546|Name=TCONS_00052546|organism=Clytia hemisphaerica|type=transcript|length=790bp|location=Sequence derived from alignment at scaffold_217:231225..232014 (Clytia hemisphaerica)
TNctctctaagggtcaccttttcaccaaaattcagtctctctaagggtaa
gggtccagaggtctggcacgcacatacccgacacccatcaatcctagtac
cccccggggagTTGAGTTTATAGGCCTTTATAtccctaaaattatttttt
atgttttgaattgaataggAGGTAATTAAATGGTGTCAAATCATTCTAAT
ATATTCATCTCCGCTCACAACAACAACCAAAAAGCAggtaaaaaacaaag
ttttaaaagactttgaaaaatgcttcatttttgttaaaaaataaaCATTA
TTAGTTCAACTTAAAGCAGTGACAACTGGTGCTGATGCTTAATACCCTGA
CGATCAATTCTTAGCAATCGATCCATAAGAATTAAAGCTATAAAATCAGA
GTTAAGACGTGAAAGTTACTTGgactttcacaaaatttcagatcaaattc
aaaagttaactGGGTCGATTCAGCAAATTTCAGCTCTGGAAACTGAGCTT
CTCTCAATAAAAACTGTGAAAGAGATAAGCTAGGAAATGTGAATTGAgta
ttgttttttaataaactcGACAGAGAAGCTGTACGTAGCCTCATAGCTAT
TACcccgattttttcagaaattttgctaGGTCGTTTTAGCCATTTCTAGC
TATGTCTCTCGGCTTCATATTATCTCTAAATGAAAGGCGGCCAGATATAT
AAGCAGTCACTCAAGGTCATTACACGTGAATTTTTAGAGAAGTTGAGCTC
GGTAATAATATGATCCCGATTTGCTAGGGCGAAAGAGGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033230XLOC_033230Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052546-exon-scaffold_217-1491911889:231225..232014TCONS_00052546-exon-scaffold_217-1491911889:231225..232014Clytia hemisphaericaexon
TCONS_00052546-exon-scaffold_217-1510915933:231225..232014TCONS_00052546-exon-scaffold_217-1510915933:231225..232014Clytia hemisphaericaexon
TCONS_00052546-exon-scaffold_217-1575043694:231225..232014TCONS_00052546-exon-scaffold_217-1575043694:231225..232014Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_217supercontigscaffold_217:231225..232014 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.440091	0.917643	1.33918	1.96308	3.71403	1.93878	4.17391	3.38439	1.53396	2.14905	2.42422	1.83539	1.95437	1.41914	1.30385	1.28163	1.8804	1.06932	1.54	2.48006	1.43299	1.44963	1.43771	1.40461	1.2057	0.630078	2.59321	1.83795	3.85829	3.41005
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052546 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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