TCONS_00052549 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052549
Unique NameTCONS_00052549
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length684

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052549 ID=TCONS_00052549|Name=TCONS_00052549|organism=Clytia hemisphaerica|type=transcript|length=684bp
CTTGCGATATCACTCAGTGTTTGGAGCTCAGCTTGCcatttttctatcaa
tttcttTACATATTCCTGTTGGCCACCCTCTTGACCAATGAAACCACCAA
GATATTTATGTCCATCAACCGTGATGTTGATTCCTGTGTCTTTGAATAGC
ACCTTTGCTTCTTCAAGCTTCTCCTCCTTCACTATCAAATACGACTTGGA
AGCTTTTGGGTTGTAACCTTGGAGAGGTCCTAAGTCATTGACGTCATCCC
ACCACTTCTTCAGGGCTTGAAGCTTCCCAGTACCAGCGAGGTCGTCAGCA
TATGCAGCATTTTTAACTCCTTGTGTCAGCAAATCTTCTTGGAGGATCTC
AAGCAGTGGCATTAATCCAATTGCATATGCTGGCATTGCTGTAGGGTCGC
CTTGTGTGGTACCTTCTTGCGATGCAATCTCCTTTCCTCCCATTAGGAAA
AGTCTTGATGGGTGGTGGTAGCAGTTGTGAATATATTGAGCCATAGCTGG
ACACAATATTTTGATGTTGCGGAGCAGTGATCTTCTGTTAATGCTGTTGA
AAGCATTTGCTGCATCCACTAGTATCACTCCGTCTGTCTCATCTTCTTGG
AATAGTTGGTTGATTGCGTGAACTGCCGCTTCACAGCCAGCCTGCTGTCC
AGCGCACACTTGAACACTACCAGTTGCTTTAAGG
Run BLAST on NCBI

protein sequence of TCONS_00052549-protein

>TCONS_00052549-protein ID=TCONS_00052549-protein|Name=TCONS_00052549-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
LKATGSVQVCAGQQAGCEAAVHAINQLFQEDETDGVILVDAANAFNSINR
RSLLRNIKILCPAMAQYIHNCYHHPSRLFLMGGKEIASQEGTTQGDPTAM
PAYAIGLMPLLEILQEDLLTQGVKNAAYADDLAGTGKLQALKKWWDDVND
LGPLQGYNPKASKSYLIVKEEKLEEAKVLFKDTGINITVDGHKYLGGFIG
QEGGQQEYVKKLIEKWQAELQTLSDIA
Run BLAST on NCBI

transcript from alignment at scaffold_217:260649..261332

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052549 ID=TCONS_00052549|Name=TCONS_00052549|organism=Clytia hemisphaerica|type=transcript|length=684bp|location=Sequence derived from alignment at scaffold_217:260649..261332 (Clytia hemisphaerica)
CCTTAAAGCAACTGGTAGTGTTCAAGTGTGCGCTGGACAGCAGGCTGGCT
GTGAAGCGGCAGTTCACGCAATCAACCAACTATTCCAAGAAGATGAGACA
GACGGAGTGATACTAGTGGATGCAGCAAATGCTTTCAACAGCATTAACAG
AAGATCACTGCTCCGCAACATCAAAATATTGTGTCCAGCTATGGCTCAAT
ATATTCACAACTGCTACCACCACCCATCAAGACTTTTCCTAATGGGAGGA
AAGGAGATTGCATCGCAAGAAGGTACCACACAAGGCGACCCTACAGCAAT
GCCAGCATATGCAATTGGATTAATGCCACTGCTTGAGATCCTCCAAGAAG
ATTTGCTGACACAAGGAGTTAAAAATGCTGCATATGCTGACGACCTCGCT
GGTACTGGGAAGCTTCAAGCCCTGAAGAAGTGGTGGGATGACGTCAATGA
CTTAGGACCTCTCCAAGGTTACAACCCAAAAGCTTCCAAGTCGTATTTGA
TAGTGAAGGAGGAGAAGCTTGAAGAAGCAAAGGTGCTATTCAAAGACACA
GGAATCAACATCACGGTTGATGGACATAAATATCTTGGTGGTTTCATTGG
TCAAGAGGGTGGCCAACAGGAATATGTAaagaaattgatagaaaaatgGC
AAGCTGAGCTCCAAACACTGAGTGATATCGCAAG

Coding sequence (CDS) from alignment at scaffold_217:260649..261332

>TCONS_00052549 ID=TCONS_00052549|Name=TCONS_00052549|organism=Clytia hemisphaerica|type=CDS|length=681bp|location=Sequence derived from alignment at scaffold_217:260649..261332 (Clytia hemisphaerica)
CTTAAAGCAACTGGTAGTGTTCAAGTGTGCGCTGGACAGCAGGCTGGCTG
TGAAGCGGCAGTTCACGCAATCAACCAACTATTCCAAGAAGATGAGACAG
ACGGAGTGATACTAGTGGATGCAGCAAATGCTTTCAACAGCATTAACAGA
AGATCACTGCTCCGCAACATCAAAATATTGTGTCCAGCTATGGCTCAATA
TATTCACAACTGCTACCACCACCCATCAAGACTTTTCCTAATGGGAGGAA
AGGAGATTGCATCGCAAGAAGGTACCACACAAGGCGACCCTACAGCAATG
CCAGCATATGCAATTGGATTAATGCCACTGCTTGAGATCCTCCAAGAAGA
TTTGCTGACACAAGGAGTTAAAAATGCTGCATATGCTGACGACCTCGCTG
GTACTGGGAAGCTTCAAGCCCTGAAGAAGTGGTGGGATGACGTCAATGAC
TTAGGACCTCTCCAAGGTTACAACCCAAAAGCTTCCAAGTCGTATTTGAT
AGTGAAGGAGGAGAAGCTTGAAGAAGCAAAGGTGCTATTCAAAGACACAG
GAATCAACATCACGGTTGATGGACATAAATATCTTGGTGGTTTCATTGGT
CAAGAGGGTGGCCAACAGGAATATGTAaagaaattgatagaaaaatgGCA
AGCTGAGCTCCAAACACTGAGTGATATCGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033233XLOC_033233Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052549-proteinTCONS_00052549-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052549-exon-scaffold_217-1491911889:260649..261332TCONS_00052549-exon-scaffold_217-1491911889:260649..261332Clytia hemisphaericaexon
TCONS_00052549-exon-scaffold_217-1510915933:260649..261332TCONS_00052549-exon-scaffold_217-1510915933:260649..261332Clytia hemisphaericaexon
TCONS_00052549-exon-scaffold_217-1575043694:260649..261332TCONS_00052549-exon-scaffold_217-1575043694:260649..261332Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_217supercontigscaffold_217:260649..261332 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.385665	0.788017	0.214389	0.692764	0.604342	0.219349	0.576155	0.269694	0.144496	0.178982	0.604875	0.508283	0.278419	0.801059	0.222968	0.127266	0.330766	0.287549	0.214344	0.190741	0.457083	0.261403	0.290436	0.23328	0.19652	0.913563	0.405392	0.1093	0.295963	0.20566
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052549 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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