TCONS_00052612 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052612
Unique NameTCONS_00052612
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1511

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052612 ID=TCONS_00052612|Name=TCONS_00052612|organism=Clytia hemisphaerica|type=transcript|length=1511bp
GGCGGATAAGGTCATTTTGACTTAATTTGaaacattatttttttgaattt
tttgatctTCATTCCATTTCTCTTCTGAACATTAAACCTACAGCATCATA
cgtaaaataattgaaataacaAAAGATGACTGCAACATCTGGAGGATATG
ACGTTGAGTTTGTTAATGTTCATATCGAATTAAACAATGTCACTTGTGCT
ATTTGTTTGTACACATTAAAGGAACCAATGCAATCTGAAGAATGTGGACA
TCGGTTTTGTAAAACTTGTGCTGCAAACTTGGCAAAGAGtcTCAATGGAA
AGAAATACATTTGCCCACAAGATAGAATGGAGGTGCATCTTTTCCAAGAT
AGGGGAAAAGAAAGAGAGATATTGGGTCGGCTAATCAAATGCACCAATAA
CAAATCTGGCTGTGCGACAAACATAGAGTTGCGATATCTGGATGTCCATT
TAAAGACATGCGAGTTCCAAATTGTAAAATGCTTGTTTAGCGATTGTGAG
GAAAAAGTTCAGAGAAAACTTCTGGAAAAACATAGTTTGGAAGATTGTGA
ATACAGGCTTAAGTCTTGTATATTTTGCTTTGAAGATTACTCATTCAATA
TGGAAAAGGAGCACATGTGTGATTGCAGCTCTTTTCCATTATGTTGTGAC
TATTGTACTGAGATTGACATCCCAAGAAATCAGATGCAATGCCATGTCAC
TGAGAAATGTGTTAAGGTACCTACACCATGTGAGTTTGCACCATTAGGTT
GCCAAAAACAGACTACCATTGCTAGCAAAGAAAGTCACAGGATTGAAGCA
ACTCAGCATCATTTGGCACTTGCTCTAAACAAACTCATTGAACAGCAGGA
TGAACTCAAACAAAAATCAGACCAACTTTTTTCACTGAGATCAGATCATG
AGAGATTGAAATCAAAGCTTGATGCCCAGCCATCCATTTCCCAGTTCAAA
GATGAACATATTTTTCACTTAGataattttgcaaaattgtTTGAAGAAGC
TGAAACTGGTGAAGCATTTACACTTCATATGTATACATCACAGCTACACA
AGATCAcaatttctatatatttcaaAGGTTACACTCAAGATTGCAAAGAC
AATGTTTCTGTGTTTTTTCAATGCACTCAAGGTAGTTTTGACGATGTTGC
TAAATGGCCAATGGGAGGAAATATTGACTTATGCGTTATCTATGTTGATG
AAGAGTATTGGAATCTTAAATTGTCAGGTGAATCCCTTTTGAGCAATGCC
TTCAAAAATCCTAAATTGAATACAGCAGGGCAGAGAAGGGGATGGCTCAA
AGTGATATCACAAAATCGACTTGTATCCTATGTTGATAATGATTGTTTGT
GTTTGAAAATTAAAGTGaactataaataaaaataatgttttttgtATCAC
AATTTCGAAACCATACTCATACtttttattggtcagcctaagctgagcat
tcaaataggtaaaattttcttccatcatcagcatcataagacggcaaaaa
aaaaatccgat
Run BLAST on NCBI

transcript from alignment at scaffold_218:678801..682992+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052612 ID=TCONS_00052612|Name=TCONS_00052612|organism=Clytia hemisphaerica|type=transcript|length=4192bp|location=Sequence derived from alignment at scaffold_218:678801..682992+ (Clytia hemisphaerica)
GGCGGATAAGGTCATTTTGACTTAATTTGaaacattatttttttgaattt
tttgatctTCATTCCATTTCTCTTCTGAACATTAAACCTACAGCATCATA
cgtaaaataattgaaataacaAAAGATGACTGCAACATCTGGAGGATATG
ACGTTGAGTTTGTTAATGTTCATATCGAATTAAACAATGTCACTTGTGCT
ATTTGTTTGTACACATTAAAGGAACCAATGCAATCTGAAGAATGTGGACA
TCGGTTTTGTAAAACTTGTGCTGCAAACTTGGCAAAGAGGTATATATATT
TATGTTCacaatcaatgtttttgttagGAAGTCATGAATTCAAAAATAAG
TTGAGCTCCATGTTCTAGACTATCCAATGTAATTGTTTTTCTATGCACTA
TAATTATATATCTATAGGATAGAAAGTAGCAACACTTGTCATGTTAATTG
TTCTCAAATGTATTTTtgttatttcaatattttcatatttttagtcTCAA
TGGAAAGAAATACATTTGCCCACAAGATAGAATGGAGGTGCATGTAAGTT
CAGGTTTGATTTCGAACATGATCAGCTTAAGTGAAAAATcccacaaaaat
tcaaattcaattttcaaaaccatTACATTGGAACTCTTCAATGTTTTCCG
CCAAAAGACAGCTTGGTTCTTAAGTAAATCAGCTGAACAGGCTGATTGCC
AACACTCCACCAACACTCACCCCTTTAGAGAGCATGATACTGCAAGATCT
GTTTTGAGATTTATAGAAAGATCATGAAATGTATAATAGCTGTGTTTTGT
TAAATTTTAAGATTTAGCTTTTGTCTTGTGATTTTAATCTTAGCTTTTCC
AAGATAGGGGAAAAGAAAGAGAGATATTGGGTCGGCTAATCAAATGCACC
AATAACAAATCTGGCTGTGCGACAAACATAGAGTTGCGATATCTGGATGT
GAGTAATCTTCATTTAAATACAGAtcccaaattttttgaaataatgctTC
ACTAATCAAACTATTAAGGCCTTTCATTTGAATACTTCCAATTTTAGGAT
ATTTGTAGTTGTCCTTTTATACttttgggtacctaataagaGCCCCCCCC
TGCTGattaatttagcaaaaattttccacccagaaatttttattccaccc
cccccccctgcttattaagttttgagaataTTTCCACCcgccccgcttat
tccaaaccccccgttTTATTAGGTATCCGAGTAATGATGTATCTATCTCT
TCAAGGTCCATTTAAAGACATGCGAGTTCCAAATTGTAAAATGCTTGTTT
AGCGATTGTGAGGAAAAAGTTCAGAGAAAACTTCTGGAAAAACATAGTTT
GGAAGATTGTGAATACAGGCTTAAGTCTTGTATATTTTGCTTTGAAGATT
ACTCATTCAATATGGAAAAGGTATGTGCACTAGAAAAAAAGATGTTTGAT
TCAATAAATAAAGAATTCCAATGTAATATTATTTTTTCCATTGCCGAGTT
GCAAAAAATGAAGATGCAAACcttaaaattaatatttttcaaagataaCT
TGCGAGAAGTTGTTCAGTTTACTTTCATCAGGCCATCACGCAAGTTGTTG
AAATTTACTCATTACGTCATTTCTCCATCAAAATAGCTCATATATCATAC
ATCACGTCCCATATTTTGCTATAATTACGAATATCATGCTGAGATTCTTG
TCACGTCGCCAtaccaaaatgttgtttttgaaaatcatgtCATTGCCTAA
TAGCTGAGGTTCGTTAAATGGTTTGATAATATCTAGATGTAATAATGATT
TCTCtctttatgtttcttttctctttctttccAGGAGCACATGTGTGATT
GCAGCTCTTTTCCATTATGTTGTGACTATTGTACTGAGATTGACATCCCA
AGAAATCAGGTTaacaaagacatttttcaagtttcaaaTTCATACTGCGA
TGACTTCTTAGCTCAATAAATCGAATTTGAATCAATACTCACAGGAAAAA
CAATGGACAATTGATTCTTTCCACTAATGAGGCCCCCTCCCagtggacct
tcaattcacgcaatcacacaaaatgttttcccaaattcatgcattcacgc
aatgttttttcgcaattcgCGCAATGTTTTTTCGCATTCCcgcaatttct
ttttatttctttttatttcacgcaagtgaaaaagcccattaacgcattca
cgcaaactgctggggggggggcactaaTTAATCATGAGGTTTAAAATCTA
CTCGAAATTTATTGAATAGATATCCTTTGGACCTTCAActattattgttg
ttgtttctattattattatcatcatTTTTATTGATGATTGCAATTAGCTC
TTTTTTGTCATAGATGCAATGCCATGTCACTGAGAAATGTGTTAAGGTAC
CTACACCATGTGAGTTTGCACCATTAGGTTGCCAAAAACAGGTATTTATA
TTCCATGCTTCTGTATTCCTTGTATCCAAATTATGTCATCTTTTAACCGA
CAATTCTCCCCATTAATCGCTCGGAAGAATTCCTGAGTTCAAGCAGAATT
CAGAGATTTTAAACTTGATTCTTAAATCCCTGAATCTTCAATACTTTGAA
TCACGACTTATATAAAATGTTAACAGATAAAGATgtgttggacctacctc
ggaggtcctttaatttaacctttgtccgtccgtccgtccgtccgtctgtt
accagcttttctcaagattggctcattagttttttttgatttttggcaca
aagttacaaaatgacaatgcccaaaatgagacggagcccgattttcgaga
aaaaaaaatccggaaatatgccggaaaatttttgctcaaagatgcgtatt
aacaatgcccaaaacatggtcgagtctgatttttgagaaaaaattttttc
cggccgaaaatgccggaaatatgccggaaattgccgtttttcgggatttt
cattggactttttccttacaaatGGTtgctttttcattcaaaaatattat
taatagcaatgcccatcatcaagcatgtttcaattttcaataaaattttg
aagccggaactatttaaaaatcgccggaacaacctattttcgccggaaag
acagtatttcttgaatttcttgagctgtactttatatttttttatgaaat
tttgcaccaCAGGGATTTAATTTCTCGAAacaacaaaattaatttttttt
gcgacCATCTaatcttaaattttgaaattttttgtcatttaAGTAATTTC
TTTTCTGTTCTTCTAGaataaatgttttcttttataagcaagtgtctgcc
cctatatcaggctcgcattatgcttagcattctattgttcttaaacaata
aAGCCATTGTTTAGATCATATGTGATTTTTTTGCTGAATATTATACTATT
TTACTATTGTTATTATGTGGTTTGGACACTGCTTTATTTCAGACTACCAT
TGCTAGCAAAGAAAGTCACAGGATTGAAGCAACTCAGCATCATTTGGCAC
TTGCTCTAAACAAACTCATTGAACAGCAGGATGAACTCAAACAAAAATCA
GACCAACTTTTTTCACTGAGATCAGATCATGAGAGATTGAAATCAAAGCT
TGATGCCCAGCCATCCATTTCCCAGTTCAAAGATGAACATATTTTTCACT
TAGataattttgcaaaattgtTTGAAGAAGCTGAAACTGGTGAAGCATTT
ACACTTCATATGTATACATCACAGCTACACAAGATCAcaatttctatata
tttcaaAGGTTACACTCAAGATTGCAAAGACAATGTTTCTGTGTTTTTTC
AATGCACTCAAGGTAGTTTTGACGATGTTGCTAAATGGCCAATGGGAGGA
AATATTGACTTATGCGTTATCTATGTTGATGAAGAGTATTGGAATCTTAA
ATTGTCAGGTGAATCCCTTTTGAGCAATGCCTTCAAAAATCCTAAATTGA
ATACAGCAGGGCAGAGAAGGGGATGGCTCAAAGTGATATCACAAAATCGA
CTTGTATCCTATGTTGATAATGATTGTTTGTGTTTGAAAATTAAAGTGaa
ctataaataaaaataatgttttttgtATCACAATTTCGAAACCATACTCA
TACtttttattggtcagcctaagctgagcattcaaataggtaaaattttc
ttccatcatcagcatcataagacggcaaaaaaaaaatccgat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033258XLOC_033258Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052612-exon-scaffold_218-1491911889:678801..679089TCONS_00052612-exon-scaffold_218-1491911889:678801..679089Clytia hemisphaericaexon
TCONS_00052612-exon-scaffold_218-1510915933:678801..679089TCONS_00052612-exon-scaffold_218-1510915933:678801..679089Clytia hemisphaericaexon
TCONS_00052612-exon-scaffold_218-1575043694:678801..679089TCONS_00052612-exon-scaffold_218-1575043694:678801..679089Clytia hemisphaericaexon
TCONS_00052612-exon-scaffold_218-1491911889:679295..679343TCONS_00052612-exon-scaffold_218-1491911889:679295..679343Clytia hemisphaericaexon
TCONS_00052612-exon-scaffold_218-1510915933:679295..679343TCONS_00052612-exon-scaffold_218-1510915933:679295..679343Clytia hemisphaericaexon
TCONS_00052612-exon-scaffold_218-1575043694:679295..679343TCONS_00052612-exon-scaffold_218-1575043694:679295..679343Clytia hemisphaericaexon
TCONS_00052612-exon-scaffold_218-1491911889:679644..679748TCONS_00052612-exon-scaffold_218-1491911889:679644..679748Clytia hemisphaericaexon
TCONS_00052612-exon-scaffold_218-1510915933:679644..679748TCONS_00052612-exon-scaffold_218-1510915933:679644..679748Clytia hemisphaericaexon
TCONS_00052612-exon-scaffold_218-1575043694:679644..679748TCONS_00052612-exon-scaffold_218-1575043694:679644..679748Clytia hemisphaericaexon
TCONS_00052612-exon-scaffold_218-1491911889:680056..680220TCONS_00052612-exon-scaffold_218-1491911889:680056..680220Clytia hemisphaericaexon
TCONS_00052612-exon-scaffold_218-1510915933:680056..680220TCONS_00052612-exon-scaffold_218-1510915933:680056..680220Clytia hemisphaericaexon
TCONS_00052612-exon-scaffold_218-1575043694:680056..680220TCONS_00052612-exon-scaffold_218-1575043694:680056..680220Clytia hemisphaericaexon
TCONS_00052612-exon-scaffold_218-1491911889:680635..680709TCONS_00052612-exon-scaffold_218-1491911889:680635..680709Clytia hemisphaericaexon
TCONS_00052612-exon-scaffold_218-1510915933:680635..680709TCONS_00052612-exon-scaffold_218-1510915933:680635..680709Clytia hemisphaericaexon
TCONS_00052612-exon-scaffold_218-1575043694:680635..680709TCONS_00052612-exon-scaffold_218-1575043694:680635..680709Clytia hemisphaericaexon
TCONS_00052612-exon-scaffold_218-1491911889:681164..681241TCONS_00052612-exon-scaffold_218-1491911889:681164..681241Clytia hemisphaericaexon
TCONS_00052612-exon-scaffold_218-1510915933:681164..681241TCONS_00052612-exon-scaffold_218-1510915933:681164..681241Clytia hemisphaericaexon
TCONS_00052612-exon-scaffold_218-1575043694:681164..681241TCONS_00052612-exon-scaffold_218-1575043694:681164..681241Clytia hemisphaericaexon
TCONS_00052612-exon-scaffold_218-1491911889:682243..682992TCONS_00052612-exon-scaffold_218-1491911889:682243..682992Clytia hemisphaericaexon
TCONS_00052612-exon-scaffold_218-1510915933:682243..682992TCONS_00052612-exon-scaffold_218-1510915933:682243..682992Clytia hemisphaericaexon
TCONS_00052612-exon-scaffold_218-1575043694:682243..682992TCONS_00052612-exon-scaffold_218-1575043694:682243..682992Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:678801..682992 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
39.5157	38.4113	34.7928	29.8681	0.339317	0	0.970473	2.42279	4.36079	3.28396	2.5492	2.51361	2.34278	2.05664	5.73536	6.89972	7.36658	7.72425	1.06989	1.95924	3.64914	4.27181	19.9063	17.3607	2.43133	6.99192	3.62938	3.86024	11.3088	13.5436
Blast
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BLAST of TCONS_00052612 vs. Swiss-Prot (Human)
Match: TRAF6 (TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.369e-38
Identity = 129/461 (27.98%), Postives = 213/461 (46.20%), Query Frame = 3 
Query:  144 GYDVEFVNVHIELNNVTCAICLYTLKEPMQSEECGHRFCKTCAANLAKSLNGKKYICPQDR---MEVHLFQDRGKEREILGRLIKCTNNKSGCATNIELRYLDVHLKTCEFQIVKCLFSDCEEKVQRKLLEKHSLEDCEYRLKSCIFCFEDYSFNMEKEHMCDCSSFPLCCDYCTEIDIPRNQMQCHVTEKCVKVPTPCEFAPLGCQKQTTIASKESHRIEATQHH---LALALNKL--------IEQQDELKQKSDQLFS--LRSDHE--RLKSKLDAQP--------SISQFKDE------------HIFHLDNFAKLFEEAETGEAFTLH---MYTSQL-HKITISIYFKGYT-QDCKDNVSVFFQCTQGSFDDVAKWPMGGNIDLCVIYVDEEYWNLKLSGESLLSN-----AFKNPKLNTAGQRRGWLKVISQN--RLVSYVDNDCLCLKIKVNYK 1376
            GYDVEF +  +E +   C ICL  L+E +Q+  CGHRFCK C   + KS+    + CP D    +E  LF D   +REIL  ++KC N   GC   +ELR+L+ H   CEF ++ C    C+   Q+  +  H L+DC  R  SC  C    +F  ++ H  +C    + C+YC  I I R QM  H    C   P PC F+  GC ++        H  E TQ H   LA A++ L        I +    ++   QL    +R DH+   L +K++ Q         +I   +D+            +I+ + NF    +  E  +   +H    YT +  +K+ + ++ +  T Q C + +S+F    QG +D    WP  G I L ++  D+    ++ + E ++       AF+ P +    +  G++  +     R  +++ +D L ++ +V+ +
Sbjct:   55 GYDVEF-DPPLE-SKYECPICLMALREAVQTP-CGHRFCKAC---IIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNE--GCLHKMELRHLEDHQAHCEFALMDC--PQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVICEYCNTILI-REQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMRMLAQAVHSLSVIPDSGYISEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQSMYVSELKRTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTIL--DQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALRQRTFIKDDTLLVRCEVSTR 502
The following BLAST results are available for this feature:
BLAST of TCONS_00052612 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF61.369e-3827.98TNF receptor-associated factor 6 OS=Homo sapiens G... [more]
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