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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052622 ID=TCONS_00052622|Name=TCONS_00052622|organism=Clytia hemisphaerica|type=transcript|length=243bp
CCAGAATAAAAATAAGGAATTAATGTAACTAATAAAAACAACATGGCGGA
GAACAAAGGAGGTTATGATGTTGAGTTTCTCCACGAACAATTTGATGATA
TGAAATGTTCAATTTGTCTTTTGATCTTACGAGAACCAATGCAAGCTGAT
GAATGTGGTCATAGGTTTTGCAAGTCTTGCGTTGTTAACATTGAAAAAAG
TGGTCAGAAGAAGTACATATGTCCTCAAGATCGGACCAAAATG Run BLAST on NCBI transcript from alignment at scaffold_218:700563..705049+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052622 ID=TCONS_00052622|Name=TCONS_00052622|organism=Clytia hemisphaerica|type=transcript|length=4487bp|location=Sequence derived from alignment at scaffold_218:700563..705049+ (Clytia hemisphaerica)
CCAGAATAAAAATAAGGAATTAATGTAACTAATAAAAACAACATGGCGGA
GAACAAAGGAGGTTATGATGTTGAGTTTCTCCACGAACAATTTGATGATA
TGAAATGTTCAATTTGTCTTTTGATCTTACGAGAACCAATGCAAGCTGAT
GAATGTGGTCATAGGTTTTGCAAGTCTTGCGTTGTTAACATTGAAAAAAG
GTGATTAATATATTTGCAatctcaatgttttgattttgattagTTTTAGT
AGATCTACAATTTCTCGGCTGACTTTTTTTTATGATAAGATTTTCAATGc
atttgattttcttcttctttttctagcTGCCTTTATaagatataacattt
ttaattTATCTTATATATCACAACTTTTAGTGGTCAGAAGAAGTACATAT
GTCCTCAAGATCGAACCAAAATGACTGTAAGTATTATTGATTGTATCTGC
ACAGTTTTACCCCGCTCTCTCCTGATTTCCTATGGTCCAAAAAGGTCTTC
TATTCTGAAGAAGGGGTAGTAAGGAAGAGAGGGTTGCGACGAAGAATTAT
TTGTCAGGAGTCTGTCctttttttgtatcttttatctaaaattttaccaa
tttacaCTTGATTTACACTTCATTATCCGAATaagaaaattgttaaaatc
TTGTAATTTATAACTTATCaaacgtatttttttttttttttttctttcaa
agttcTTCAANTaagaaaattgttaaaatcTATTTTCTGTTTTTCCTTAT
GCAGCTCTTCAGGGACAAAGGTCGTGAACGAGAGATTTTAAATCGTCCTG
TAAAATGTATTCACCACAAAGAAGGATGTTGTTGGGCTAAAGCATTGAGA
GAACTGGAGGTGAATGAAATATGATCGCTGATATATTGTACTTACTCTCG
GTCATCTTGGTCATAAATATTACCTGAAAACAACTTTAGTTTTTTTAGGT
TGACGAGGGCTTAATTTATGGTTATTTGCAGAAATTTCTGATCTTTAAGG
ATTGTTAGAGATGTTTATAACTTTCAAGAAATAAAGATTATTTTGGGTCT
TGAGATTGCTTGTGATTGGTTGTCAGCcctttcacaaaatttagtaCAAA
TTTGACAGAGGGCAAAGTTGACAGAAAGCGTGCgtttttttagcaaaata
atAAAAGGCTCGAATAGCGATCGTTAAATTTCCCTAATGTAaagtatttc
tttattttttataaatttaaagCTTGAGTTCAAAGCACGATATTCCAACC
AAAATCCTTATGTAGATGGAATTGTTTTAATTTCGATTATTCTTTAGTAC
CATACAAAAGAATGTGATTTCGAGGAAATGGTATGCCCTTTCAACGATTG
TGGATATAAATTTCAAAGGAGGTTCTTGGCCAAACACAACAAAGAAGATT
GTTTATACAGAACGATGCTGTGTCCATTTTGCGACGAAGAGTATTCTTTC
CACCTAGAACAGGTAATTTCGTTTTTGTCAATCGTAAATACAGATTCTTA
AGTACAAAAGTATATGTATCTTGTGGCTTTCGGCGGAGCCAGAAATGATG
TAGCCTGACCCTTTTTCTATTTGCTGACACCTACGCTTGCTGACACGATC
GAAAGCTGGAGCCTACATTTAGCTCTCAGTTACTCACCACTCAGACCAGA
TTACCAATAATCTATGTTACTCATTCGCAGAGTTGGCGGTGACTAAATAT
GAAACCCACCATCCTTGAGTTTGGGAATAGTACCCAGCCACTGATTCTTA
AGTAAGGCTGACACTAGGTTTAAAGGGATTTGTCAGGTAGGTTGTCTTCt
aagctttctttttttttttaattatttttacctgaattttttttcaggac
cacatTGAAGATTGTGATTATTTACCAATTTGTTGTGACTATTGCCAAGC
CCGAGACATTCCAAGATATAAGGTATCTGATTTTTATTCTATTAACTTGT
TCTTTGTAGGGGGTAAACTCTTAGGATTTTTCTAAATTCACAATTATGTC
ACATGAATTATAAAGTTTGGAAAATTATATTTCAGATGGAGACCCACTTA
ATCCAGAAATGTGCTAAAGCGCCAAGACAATGTGATTTTGCACATTTGGG
CTGCGAAGAACAGGTTTTTAAAGatatatgattatttttttatcttttta
acatACTGTTCCTTGCTTAATTCCAGTTTAAGGTACTTTGAGGCCTCCTC
AATTAGGATAAACATTTATTTCTCACATTATTGCATGGAAACTTAAAGGT
CTTAGAAGGTTCCCTTTTGGagtaaaaacagaaaaaattcagCTAACTTC
TTCCATAAGGTAAAAAGAACTATAGCTGAAACAGGCTGAAATCAAGAGGC
ATCAAGTTCAGCACTAAaggataaaaaattattttttctttcttcttttt
tcatcttcattttctaaaagatttttgatttatttttcttagaatTTATA
ATGCACTAAATTATCTTTTCAGCTGTATATAATATGTTATAATTAAAGCA
TTGGTTGAAAATGGCAAGTGACACAAGGATTAGTACAAGCTTAAAGCGAA
TTGACTTTTAGTATAGGCATACCGGCATaagtttagtttttacaagGGGT
ACAACTTTAAAACATGTTATTTTCTTTGATAATCTCGTTATagtttaccc
ctaatgttataCTCTACTCATTTTTATCTCATTATTATTTTGTTTAGATG
CTGATGTATGACATTGCTAAGCATAACACAAATTTTTCTGACCAACACAT
CAATCTAGCTCTTCAGAAAATTTCTGTCAAAGAAAACATTATTGAGACAA
TGCGTCAGGATAAAGAAGCTTTAAAAGAACAGAATAGTGACCAAGCAAAA
GAAATCCAAAGATGGAAAGGTGAACTCCAGAGGCAATATAAAGAACAATC
AAATATCACAAAATCAGATTCCTTGAAATGGGAAATATCGGCTTTCACAA
ATGAATTAGCGAAAGCGACACAGTGGAAAATGCATAATATCCAAAGTAAA
AGCttttatacttcattgggaTATCACATTAAAGTTGAGCTTTATCCaaa
ttttcgttttcaaaattctgTTGGTATATTTGTTCAAACTATCACTggta
aatttgataaagacttaAAATGGCCGATGGATAAAGCTCTGTTtcatttt
cacattttaaacaAAGATATTCGTTGGATTCACAGGCATACTCTAGAAAC
AACTGTATACGAAGCAGATATCAAAGGACCTCTTCAAAAACCTCCGCATA
CCTCTCATCCACTTGGTAGTCACAAGCTTTTGAGTCATGCTGAATTTCCG
ACATTTCTCAAAGATGATACACTGTCTTTGGTCATCAGTGTCGTAAAtgt
aaaataaacttttaaaagttGATGTTCCTCTAGAATTGAATACGATGTAT
TTTTCTTTCTGGTTTTATTTTCTTCTCAGTATATTCTTTTCTATTTCATG
TTTGGCTCCATATTTATACAACGCTTTTCCTTACCTAGGACACCCCTTCA
TCCAGTCTTCTTCTTGCTATTCCAAATCTCCACtcgaaattaaaaaagta
aataatttgCAGGATTCAGACAGCACCTACTAAAAGCTTAACGGCAACAC
TTAACCTATGAGCGTTTTttatcgttcgttcgttcgttccttTCTTCCTT
TCGTCCGTCTGTTTCACTTTTATCCAGCACTTTCTGTGAGCTGATTTTTA
AATTAGATGACCCCGTataattttggtcaattttttcaattatatGAATa
ttaggaagattttcaagttattttagatcttttatattatatatttataa
atttATGGCAGTTATTTTTTCCTTAGATATATTGTACAGTtcctatattt
gaaaaatagtTCCATTCGACATTGagctttcagaaaaacaatTCCTATTT
TcgttaatttctttttgatttgatcCTCTACAATATTAACGACACTCACA
GGAATACTATTTCAGCATAACTAATACAAAATATATACAATGAATGCAAT
GGGAGGCTATGACGTCGAGTTTCTCCACGAACAATTTGATGATATGAAAT
GTTCAATTTGTCTTTTGGTTTTACGAGAACCCATGCAAGCTGATGAATGT
GGTCATAGATTTTGCAAGTCTTGCGTTGTCAACATTAAAAAGAGGTATGT
TTTATAGGCCAAGCTGATGATCTTCAATTACTTTCAGTAGATTTcttagt
aatttttttaaataataagtTGTTAAATCATTTCAAATCTCTTGATTTTC
TTCTTGTGCCTGTTTTCNTTAAAAAGAGGTATGTTTTATAGGCCAAGCTG
ATGATCTTCAATTACTTTCAGTAGATTTcttagtaatttttttaaataat
aagttgttaaatcatttcaaatctcttgatttttttcttgtgcCTGTTTT
CTAGATATAACATTTATGATTATCCTATATATTATAACTTTTAGTGGTCA
GAAGAAGTACATATGTCCTCAAGATCGGACCAAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052622-exon-scaffold_218-1491911889:700563..700762 | TCONS_00052622-exon-scaffold_218-1491911889:700563..700762 | Clytia hemisphaerica | exon |
| TCONS_00052622-exon-scaffold_218-1510915933:700563..700762 | TCONS_00052622-exon-scaffold_218-1510915933:700563..700762 | Clytia hemisphaerica | exon |
| TCONS_00052622-exon-scaffold_218-1575043694:700563..700762 | TCONS_00052622-exon-scaffold_218-1575043694:700563..700762 | Clytia hemisphaerica | exon |
| TCONS_00052622-exon-scaffold_218-1491911889:705007..705049 | TCONS_00052622-exon-scaffold_218-1491911889:705007..705049 | Clytia hemisphaerica | exon |
| TCONS_00052622-exon-scaffold_218-1510915933:705007..705049 | TCONS_00052622-exon-scaffold_218-1510915933:705007..705049 | Clytia hemisphaerica | exon |
| TCONS_00052622-exon-scaffold_218-1575043694:705007..705049 | TCONS_00052622-exon-scaffold_218-1575043694:705007..705049 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_218 | supercontig | scaffold_218:700563..705049 + |
Blast
The following BLAST results are available for this feature:
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