TCONS_00052638 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052638
Unique NameTCONS_00052638
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1213

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052638 ID=TCONS_00052638|Name=TCONS_00052638|organism=Clytia hemisphaerica|type=transcript|length=1213bp
aaaaaataaaaattcgaaaattaaaaacaaatagaaaataaaaatgccAA
AAGGTGGTTATGATGTTGAATTGGTGAATGGTGAACTGGAGAATGATATC
ACGTGTTCAATCTGTTTGTTCATTTTGAAAGATCCTATGCAAGCCATAGA
ATGTGGACATCGATTTTGTAAAACTTGTGTTGCTGGTCTTCAAAAGGGCA
TTAATGGCAATTATATCTGTCCACAAGATCGAATTGAAACGCCCcTTTAT
CCTGATAAAGGAAAAGGTCGAGAGATTTCGAACTTAATTGTTAAATGTTC
TAGAAACAAACTGGGTTGTGCTTGGATCAAAGAACTGCGTGAATTAGACA
ATCATTTGGCTCAATGTGAATTTGAACTAGTGCAATGTGTTATCGAAGCC
TGCTCCATGACTTTTCAACGACAGTTTGAAAATGAACACTATTCTAAAGA
GTGTTATTACAGGCTGAAAATGTGTTCGTTTTGTTCGGAAGAATATATAC
TGGCGTATGAAGAGGAACACATCGAAGATTGTGAACAATTTCCACTTTGC
TGTGATTTTTGTAACGCCGTAGAAATCGCCAAATCTGAGATGGAAACGCA
CTTATTACATGATTGTAAAAAACTACGTCATTCATGTCCATTCGCCAATC
TTGGTTGTGAGAAAAAGATGTTTTTAGAAGACCTAAAAGTACACGAGGCA
AACTCACATGACTACCATTTGCAACTAGCATCTAATAAGATTGCTCTACA
AGATCAAGTCATCAGCGAACAAACACAAAATGTAGAAATGCTATTGCGAA
AAATCGAAAAGCTCGAAAATAAACCCTCTGTGTTAAGTGATGTTCATGTT
TGGAGCATTCCATCTTTCACTAGAGAAATCGAAAAGGCTGAAGAAAATTT
GTATCTTTCCAAATTGATTTATACAGCCGATGGGTATAAGATGGAATTCC
TCCTATACCCTAACGGTGATCTCGATAGAGCTGTCAGCTGCTTTTGTAAA
AGCGTTGAGGGTTCTTTCGCTGATTTATTGAAATGGccgatgaaaaaagt
gattCGAGTTTCGATCCTTGATAAGAATGACAATTTGAAAAGTGTATGTA
AACTCAAAACTGAAAATCATAATTCGTTCAAGGAGCCAGTTCACAAACAC
AAACCTAGAGGCTGGAAAAGATTTATTCCACACGATCAATTACCCATACT
CCTTCATAACGAC
Run BLAST on NCBI

transcript from alignment at scaffold_218:729576..734244+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052638 ID=TCONS_00052638|Name=TCONS_00052638|organism=Clytia hemisphaerica|type=transcript|length=4669bp|location=Sequence derived from alignment at scaffold_218:729576..734244+ (Clytia hemisphaerica)
aaaaaataaaaattcgaaaattaaaaacaaatagaaaataaaaatgccAA
AAGGTGGTTATGATGTTGAATTGGTGAATGGTGAACTGGAGAATGATATC
ACGTGTTCAATCTGTTTGTTCATTTTGAAAGATCCTATGCAAGCCATAGA
ATGTGGACATCGATTTTGTAAAACTTGTGTTGCTGGTCTTCAAAAGGGGT
AATATTCACagtataaacttttaatttggtaccttattggtattaaattt
cgcgggttaCAAAGTTTCACGatttgcgaaattttttcgaggaAACGTGT
CTCgtgtgtattaaatttcgcgattcactaaattggGCATTTTCAAAAGG
TGGGAATAAAGTAAGAAAAtaactgattttgcttgaaacacaacatATTG
GGTAtaaacataccaaaaatagtaattaagtgtaacaaataagtattttc
gatttttggcgtattttgaaaatttttcgcgtgtatttaatttcgcgatt
ttgtatttttgaaaaatttaaattttaaaattaaaaatttaatttcgcgg
aatttgacctataaatcgcgaaattaagtacccgcgaaattttgtaaccc
gcgaaatttaataccaataaggtagtcGATATTTTACATACAATTTCTTT
AGCAGGTCCTGCAAAACTGATCTTAACATCGTTTTGATAAAAGGTTTATG
TGTTAAAAAGGTGAAAAAGAGGTTTCCGATGGCTAGGTTTGTATCATTAT
CTCGCTATTAAacactttcaatatttttcagagAATTTGATTGGTCTTAC
TTTTCAATTAACAGCATTAATGGCAATTATATCTGTCCACAAGATCGAAT
TGAAACGCCCGTAAGAAcgaatacatttttttttaagaaagactactttc
tttttaattgggATATTATTACCAAAGCTCTTATTTTCTAACTAGATTCT
ATCCCAAGCTAAATTCTATTCTATGCTTTTTCCCAAAGTGTGACATTTTT
CTATATGCTGtgctatttctttttttcatttttctcttttcagcTTTATC
CTGATAAAGGAAAAGGTCGAGAGATTTCGAACTTAATTGTTAAATGTTCT
AGAAACAAACTGGGTTGTGCTTGGATCAAAGAACTGCGTGAATTAGACGT
AAGTGTGCGTTTAAGCATTTCTAAATTCTCTCTATCAGACTTTAGTAGCT
TGGACtgtatactttaggcgtacaaacttttgcgagcagaaactttcgcg
aggtcgaaaaattgCGAAATTGACGACATTTAGTTACTTTCacgaatttg
agaaaaaaaaaactttcgcgagcataaactttcgcgtaTCGTtagataaa
aatgagaattttcgaatgaaaattgccttaaaagtgaaaaatattcctta
aatccgATAAAAACGGTTGCTCCtcgactttaaaaaggcattaaaggata
aaaatattccaaaaagaatttccaaagACATACGCCTAAACAGGCCTAAA
GtattattattttgtttatttcaaatttattttttcagaacCTTCTTATC
AAGTCATTTTTTCTCCACTAGAATCATTTGGCTCAATGTGAATTTGAACT
AGTGCAATGTGTTATCGAAGCCTGCTCCATGACTTTTCAACGACAGTTTG
AAAATGAACACTATTCTAAAGAGTGTTATTACAGGCTGAAAATGTGTTCG
TTTTGTTCGGAAGAATATATACTGGCGTATGAAGAGGTATCCAATTTCTA
TTAGTCAATCTAAAATTGATTTAATGATCCTATTTGCGATGATATGATAA
TATTAaatcaaggatttattatacactggatatacaagtaacagattttt
gccgatttctcgtgtactagctatgtccgcagtaatgatgtcattgttca
ctctccttccctcattaaatgattttcgaagcatttttattgcatttctt
atcgaaaatcactcatccaattctcaaaagagacttaaaactttcctgtg
agagtcagattcttccacctaattgctaattataagtcgttatgacgttt
caagctgtgagaaagatgcaaaagaggtgttgtgtataagaaatttaatg
ttgacaccggaaattttcagacttcaacctaaaaaaaaaccaccttgcca
ccacgtgcctccagaGGATTTTCATatcacagtggagccaagacactcaa
gtcttatgtatgttaatttcagctcttctggggacagtcttggaaagata
tttccaattgaaaatttcgtgtcactataagcattttgtcagaatttctt
gtctaataatgtttttctcacattagatttcacaaatgtatccagctcgg
aatgctagccttactttcaaacatttttttctgcaaatgtacaaaaagag
agagctagaaaactttttaaaaataagactgataaacatttttttaaatc
agacaacttcgagccgccatgacagttgtcctttgcggacaaagctagaa
cataaattgttttctgaaacaatgaaaatacaatgatcgctctccatcgt
tttatgagtcatttatccagtgtataataaatctttgattaaatatattt
taatttcattGATTGAGGACTACTATTCCAAGGTGCCTAATTATTATaac
attattttttattgaaccaggcatgttttttttaagaacattcaaaattt
ctgACCTTCCGgaagttcttaactttttgagttttaagcttaaaaatctt
cttaaaattttcttaatttcaccGTTTTGTTAGTGTTTTTGTGAATTTCC
TAAGAATTCTTTTATAGTCCTTAAACTCTTAAAAATCGAAGCCTAATTTT
CTTAATAGTTCGTTTCAAACCTTCTAGGAACACATCGAAGATTGTGAACA
ATTTCCACTTTGCTGTGATTTTTGTAACGCCGTAGAAATCGCCAAATCTG
AGGTAAGTTATTATTTAACCCTTTAAATGCCACGGTCctatttttctaag
ttttttaagaaaatcaccaatcacttttgtttattttttcatgaccatga
agcacaattcaattcctacgagttagaaaAATATACCGCAAAATATACTC
ggcattggcacttaaagggttagaGAAATTATGATGTATAGTTTCAATTG
AGAATGATTTAgtaaatttagaaaatgttcTTTCCAATCAATCATCAAAC
ATCCTCATGTGTTTCGTACAAGCCTCTGAAATGTAGATCTGGAACAAATG
ATTATTGATTATATGGATGATTTAAAGCTTAAAATTCCGAAGTTACAGTT
TTACGAATAACCAAAATATTCTATTACAGTATTTAGAgttttttattgct
tttaatGGTAAGTTAATTTTGTGCATACTTTGCTTGTCTACCTGggtttt
ctgtaaaaaaatgaCCACTAACAGATATCGAACAAACTGTATCGGACTGT
AGGTGCACTATACTCTTTAAGTTTTAGCACGTATGTGtagttaattttta
ttttttctactttttagtCTAGGCTACTAAAGCCTTGATATCAAATCGAT
CGAAAGTGTGcattaagggaacttattttggcggagacaaaattcgccaa
aattaagtATTTTACTTACTCGCCAAGATAAGCTCTCGCCGAAATTCTCT
TCTGCATTTTGCCAAAATAacccctaaaaatcataaaaattgctcaaatg
AGGCAAAATAGTACAGATTTAGCGTGCtactcgccaaaattagttctcgc
aaaaaaataagaaattttaccattcggcaaaacaagttctcgccaaaatt
aaagattttaaagattttcactGGTCGCCAAAGTTAGTTCTCATTTCCTT
GATGTACTTTAGAATCAATCTATCGATATTTTGTTTAGAATTCTTGTGAT
AATGGCATACAGTAAcacgtttttgtttattttttactaGATGGAAACGC
ACTTATTACATGATTGTAAAAAACTACGTCATTCATGTCCATTCGCCAAT
CTTGGTTGTGAGAAAAAGGTATAAAGTTCACTGACGTTAATTTTAAGTAC
CCAACTGGATTttcttaaaagatttttaaatataCCTGAAATTAGTGTAG
CAATTATCTGAATTCTTTTTCAGATGTTTTTAGAAGACCTAAAAGTACAC
GAGGCAAACTCACATGACTACCATTTGCAACTAGCATCTAATAAGATTGC
TCTACAAGATCAAGTCATCAGCGAACAAACACAAAATGTAGAAATGCTAT
TGCGAAAAATCGAAAAGCTCGAAAATAAACCCTCTGTGTTAAGTGATGTT
CATGTTTGGAGCATTCCATCTTTCACTAGAGAAATCGAAAAGGCTGAAGA
AAATTTGTATCTTTCCAAATTGATTTATACAGCCGATGGGTATAAGATGG
AATTCCTCCTATACCCTAACGGTGATCTCGATAGAGCTGTCAGCTGCTTT
TGTAAAAGCGTTGAGGGTTCTTTCGCTGATTTATTGAAATGGccgatgaa
aaaagtgattCGAGTTTCGATCCTTGATAAGAATGACAATTTGAAAAGTG
TATGTAAACTCAAAACTGAAAATCATAATTCGTTCAAGGAGCCAGTTCAC
AAACACAAACCTAGAGGCTGGAAAAGATTTATTCCACACGATCAATTACC
CATACTCCTTCATAACGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033263XLOC_033263Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052638-exon-scaffold_218-1491911889:729576..729773TCONS_00052638-exon-scaffold_218-1491911889:729576..729773Clytia hemisphaericaexon
TCONS_00052638-exon-scaffold_218-1510915933:729576..729773TCONS_00052638-exon-scaffold_218-1510915933:729576..729773Clytia hemisphaericaexon
TCONS_00052638-exon-scaffold_218-1575043694:729576..729773TCONS_00052638-exon-scaffold_218-1575043694:729576..729773Clytia hemisphaericaexon
TCONS_00052638-exon-scaffold_218-1491911889:730390..730435TCONS_00052638-exon-scaffold_218-1491911889:730390..730435Clytia hemisphaericaexon
TCONS_00052638-exon-scaffold_218-1510915933:730390..730435TCONS_00052638-exon-scaffold_218-1510915933:730390..730435Clytia hemisphaericaexon
TCONS_00052638-exon-scaffold_218-1575043694:730390..730435TCONS_00052638-exon-scaffold_218-1575043694:730390..730435Clytia hemisphaericaexon
TCONS_00052638-exon-scaffold_218-1491911889:730619..730723TCONS_00052638-exon-scaffold_218-1491911889:730619..730723Clytia hemisphaericaexon
TCONS_00052638-exon-scaffold_218-1510915933:730619..730723TCONS_00052638-exon-scaffold_218-1510915933:730619..730723Clytia hemisphaericaexon
TCONS_00052638-exon-scaffold_218-1575043694:730619..730723TCONS_00052638-exon-scaffold_218-1575043694:730619..730723Clytia hemisphaericaexon
TCONS_00052638-exon-scaffold_218-1491911889:731147..731311TCONS_00052638-exon-scaffold_218-1491911889:731147..731311Clytia hemisphaericaexon
TCONS_00052638-exon-scaffold_218-1510915933:731147..731311TCONS_00052638-exon-scaffold_218-1510915933:731147..731311Clytia hemisphaericaexon
TCONS_00052638-exon-scaffold_218-1575043694:731147..731311TCONS_00052638-exon-scaffold_218-1575043694:731147..731311Clytia hemisphaericaexon
TCONS_00052638-exon-scaffold_218-1491911889:732453..732527TCONS_00052638-exon-scaffold_218-1491911889:732453..732527Clytia hemisphaericaexon
TCONS_00052638-exon-scaffold_218-1510915933:732453..732527TCONS_00052638-exon-scaffold_218-1510915933:732453..732527Clytia hemisphaericaexon
TCONS_00052638-exon-scaffold_218-1575043694:732453..732527TCONS_00052638-exon-scaffold_218-1575043694:732453..732527Clytia hemisphaericaexon
TCONS_00052638-exon-scaffold_218-1491911889:733516..733593TCONS_00052638-exon-scaffold_218-1491911889:733516..733593Clytia hemisphaericaexon
TCONS_00052638-exon-scaffold_218-1510915933:733516..733593TCONS_00052638-exon-scaffold_218-1510915933:733516..733593Clytia hemisphaericaexon
TCONS_00052638-exon-scaffold_218-1575043694:733516..733593TCONS_00052638-exon-scaffold_218-1575043694:733516..733593Clytia hemisphaericaexon
TCONS_00052638-exon-scaffold_218-1491911889:733699..734244TCONS_00052638-exon-scaffold_218-1491911889:733699..734244Clytia hemisphaericaexon
TCONS_00052638-exon-scaffold_218-1510915933:733699..734244TCONS_00052638-exon-scaffold_218-1510915933:733699..734244Clytia hemisphaericaexon
TCONS_00052638-exon-scaffold_218-1575043694:733699..734244TCONS_00052638-exon-scaffold_218-1575043694:733699..734244Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:729576..734244 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.190612	0.0107616	0.134474	0.41981	0	0	0	0.527531	0	0.441911	0	3.47634e-09	0	0	0.37299	0	0	0.299963	2.69471e-06	0.000595211	0	0.447234	0.0459358	0	1.61819e-08	4.37002e-07
Blast
[Close]
BLAST of TCONS_00052638 vs. Swiss-Prot (Human)
Match: TRAF6 (TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.539e-38
Identity = 121/427 (28.34%), Postives = 190/427 (44.50%), Query Frame = 2 
Query:   56 GYDVELVNGELENDITCSICLFILKDPMQAIECGHRFCKTCVAGLQKGINGNYICPQDR---IETPLYPDKGKGREISNLIVKCSRNKLGCAWIKELRELDNHLAQCEFELVQCVIEACSMTFQRQFENEHYSKECYYRLKMCSFCSEEYILAYEEEHIEDCEQFPLCCDFCNAVEIAKSEMETHLLHDCKKLRHSCPFANLGCEKKMFLEDLKVHEANSHDYHLQLAS-----------------------------NKIALQDQVISEQTQNVEM-------LLRKIEKLENKPSVL-----SDVHVWSIPSFTREIEKAEEN---LYLSKLIYTAD-GYKMEFLLY---PNGDL-DRAVSCFCKSVEGSFADLLKWPMKKVIRVSILDKND-----NLKSVCKLKTENHNSFKEPVHKHKPRGW 1165
            GYDVE  +  LE+   C ICL  L++ +Q   CGHRFCK C+  ++   +  + CP D    +E  L+PD    REI +L+VKC     GC    ELR L++H A CEF L+ C    C   FQ+   N H  K+C  R   C  C+       +E H ++C    + C++CN + I + +M  H   DC      C F+  GC +KM    L  H   +   H+++ +                              ++  QD  I E T  +E        L R I  LE+K + +     + +++W I +F   ++  EE    +  S   YT   GYK+   L+   P        +S F  +++G +   L WP +  IR++ILD+++     N + +   K E   +F+ P     P+G+
Sbjct:   55 GYDVEF-DPPLESKYECPICLMALREAVQT-PCGHRFCKACI--IKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMVKCPNE--GCLHKMELRHLEDHQAHCEFALMDC--PQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVICEYCNTILI-REQMPNHYDLDCPTAPIPCTFSTFGCHEKMQRNHLARHLQENTQSHMRMLAQAVHSLSVIPDSGYISEVRNFQETIHQLEGRLVRQDHQIRELTAKMETQSMYVSELKRTIRTLEDKVAEIEAQQCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPE-LLAFQRPTIPRNPKGF 471
The following BLAST results are available for this feature:
BLAST of TCONS_00052638 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF64.539e-3828.34TNF receptor-associated factor 6 OS=Homo sapiens G... [more]
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