TCONS_00052678 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052678
Unique NameTCONS_00052678
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length745

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052678 ID=TCONS_00052678|Name=TCONS_00052678|organism=Clytia hemisphaerica|type=transcript|length=745bp
GTTGATAACGCAACACAATATTGCGCAATGCTTACAAGACACCGGTAAAA
CGAAAGAAGCTCTCGAAATTTACCGACGAGTTGAACAGAAGCAGCTAAAA
ATATTGGGCACTGATCATCCAAGGGTGTTGATAACGCAACACAATATTGC
GCAATGCTTACAAGACACCGGTAAAACGAAAGAAGCTCTCGAAATTTACC
GCCGAGTTGAACAGAAGCAGCTAAAAATATTGGGCACTGATCATCCAAGG
GTGTTGATAACGCAACACAATATTGCGCAATGCTTACAAGACACCGGTAA
AACGAAAGAAGCTCTCGAAATTTACCGACGAGTTGAACAGAAGCAGCTAA
AAATATTGGGCACTGATCATCCAAGTGTGTTGATAACGCAAAAGAATATC
GCAGATTCTTTGGTagatattgaaaagaaagaggAAGCCGTTGTCATTTA
CAAACAGGTCGCGTCAAAACAATTGAACGTTCTTGGTGAACAACACCCAG
ACTTACTCATCACGAAATACAATTTAGCTGTTTGCTTGCACAAAATTGGA
CGAATTGAAGAAGCTTTGGATATATTTAGAGAAGTGGAGCAAGTGAGAAT
GACAACACTTGATGAAAACCATCCATCATTGGTGAGAACCAAGAAGTTCA
TCGAAATGTGCTTGGAAGATTTGAAATCAAGTAATAAAAGTGTCCTGAAG
AGACGATGTGTTATTGCATGAGCCTGAAAGAAGATGAGATACACG
Run BLAST on NCBI

protein sequence of TCONS_00052678-protein

>TCONS_00052678-protein ID=TCONS_00052678-protein|Name=TCONS_00052678-protein|organism=Clytia hemisphaerica|type=polypeptide|length=239bp
LITQHNIAQCLQDTGKTKEALEIYRRVEQKQLKILGTDHPRVLITQHNIA
QCLQDTGKTKEALEIYRRVEQKQLKILGTDHPRVLITQHNIAQCLQDTGK
TKEALEIYRRVEQKQLKILGTDHPSVLITQKNIADSLVDIEKKEEAVVIY
KQVASKQLNVLGEQHPDLLITKYNLAVCLHKIGRIEEALDIFREVEQVRM
TTLDENHPSLVRTKKFIEMCLEDLKSSNKSVLKRRCVIA
Run BLAST on NCBI

transcript from alignment at scaffold_218:518324..519383-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052678 ID=TCONS_00052678|Name=TCONS_00052678|organism=Clytia hemisphaerica|type=transcript|length=1060bp|location=Sequence derived from alignment at scaffold_218:518324..519383- (Clytia hemisphaerica)
GTTGATAACGCAACACAATATTGCGCAATGCTTACAAGACACCGGTAAAA
CGAAAGAAGCTCTCGAAATTTACCGACGAGTTGAACAGAAGCAGCTAAAA
ATATTGGGCACTGATCATCCAAGGGTGTTGATAACGCAACACAATATTGC
GCAATGCTTACAAGACACCGGTAAAACGAAAGAAGCTCTCGAAATTTACC
GCCGAGTTGAACAGAAGCAGCTAAAAATATTGGGCACTGATCATCCAAGG
GTGTTGATAACGCAACACAATATTGCGCAATGCTTACAAGACACCGGTAA
AACGAAAGAAGCTCTCGAAATTTACCGACGAGTTGAACAGAAGCAGCTAA
AAATATTGGGCACTGATCATCCAAGTGTGTTGATAACGCAAAAGAATATC
GCAGATTCTTTGGTAGATATTGAAAAGAAAGAGGAAGCCGTTGTCATTTA
CAAACAGGTCGCGTCAAAACAATTGAACGTTCTTGGTGAACAACACCCAG
ACTTACTCATCACGAAATACAATTTAGCTGTTTGCTTGCACAAAATTGGA
CGAATTGAAGAAGCTTTGGATATATTTAGAGAAGTGGAGCAAGTGAGAAT
GACAACACTTGATGAAAACCATCCATCATTGGTGAGAACCAAGAAGTTCA
TCGAAATGTGCTTGGAAGATTTGAAATCAAGTAATAAAAGGTTAGTTTAT
AATAAAACTGGAGGTCTTATTCAGATTTTGTGGTAATATCTTAAATACCG
AGACAAGGTTATGTAATGATGTCATTCATCAACTATAAATACTTCAAATT
ATGTGGAAAGGATTTTCAAGCATTTTACGCAGTTTTACGTTACTTTACTT
AGATTCAAGTTTTTGGTGCGACAGTGAAAGTATTCTCACGGAAGAAAAAG
TTCAAATGATGGACTGATTTTGTGAAAATTGACAATCAAATATTAAATGT
ATTACCTTTAAGTTATCTTCGTTTGTATTTATTGCGTTTAAATGCTTTTT
TTTAGTGTCCTGAAGAGACGATGTGTTATTGCATGAGCCTGAAAGAAGAT
GAGATACACG

Coding sequence (CDS) from alignment at scaffold_218:518324..519383-

>TCONS_00052678 ID=TCONS_00052678|Name=TCONS_00052678|organism=Clytia hemisphaerica|type=CDS|length=1440bp|location=Sequence derived from alignment at scaffold_218:518324..519383- (Clytia hemisphaerica)
TGTCCTGAAGAGACGATGTGTTATTGCATGATTGATAACGCAACACAATA
TTGCGCAATGCTTACAAGACACCGGTAAAACGAAAGAAGCTCTCGAAATT
TACCGACGAGTTGAACAGAAGCAGCTAAAAATATTGGGCACTGATCATCC
AAGGGTGTTGATAACGCAACACAATATTGCGCAATGCTTACAAGACACCG
GTAAAACGAAAGAAGCTCTCGAAATTTACCGCCGAGTTGAACAGAAGCAG
CTAAAAATATTGGGCACTGATCATCCAAGGGTGTTGATAACGCAACACAA
TATTGCGCAATGCTTACAAGACACCGGTAAAACGAAAGAAGCTCTCGAAA
TTTACCGACGAGTTGAACAGAAGCAGCTAAAAATATTGGGCACTGATCAT
CCAAGTGTGTTGATAACGCAAAAGAATATCGCAGATTCTTTGGTAGATAT
TGAAAAGAAAGAGGAAGCCGTTGTCATTTACAAACAGGTCGCGTCAAAAC
AATTGAACGTTCTTGGTGAACAACACCCAGACTTACTCATCACGAAATAC
AATTTAGCTGTTTGCTTGCACAAAATTGGACGAATTGAAGAAGCTTTGGA
TATATTTAGAGAAGTGGAGCAAGTGAGAATGACAACACTTGATGAAAACC
ATCCATCATTGGTGAGAACCAAGAAGTTCATCGAAATGTGCTTGGAAGAT
TTGAAATCAAGTAATAAAAGTGTCCTGAAGAGACGATGTGTTATTGCATG
ATTGATAACGCAACACAATATTGCGCAATGCTTACAAGACACCGGTAAAA
CGAAAGAAGCTCTCGAAATTTACCGACGAGTTGAACAGAAGCAGCTAAAA
ATATTGGGCACTGATCATCCAAGGGTGTTGATAACGCAACACAATATTGC
GCAATGCTTACAAGACACCGGTAAAACGAAAGAAGCTCTCGAAATTTACC
GCCGAGTTGAACAGAAGCAGCTAAAAATATTGGGCACTGATCATCCAAGG
GTGTTGATAACGCAACACAATATTGCGCAATGCTTACAAGACACCGGTAA
AACGAAAGAAGCTCTCGAAATTTACCGACGAGTTGAACAGAAGCAGCTAA
AAATATTGGGCACTGATCATCCAAGTGTGTTGATAACGCAAAAGAATATC
GCAGATTCTTTGGTAGATATTGAAAAGAAAGAGGAAGCCGTTGTCATTTA
CAAACAGGTCGCGTCAAAACAATTGAACGTTCTTGGTGAACAACACCCAG
ACTTACTCATCACGAAATACAATTTAGCTGTTTGCTTGCACAAAATTGGA
CGAATTGAAGAAGCTTTGGATATATTTAGAGAAGTGGAGCAAGTGAGAAT
GACAACACTTGATGAAAACCATCCATCATTGGTGAGAACCAAGAAGTTCA
TCGAAATGTGCTTGGAAGATTTGAAATCAAGTAATAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033283XLOC_033283Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052678-proteinTCONS_00052678-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052678-exon-scaffold_218-1575043694:518694..519383TCONS_00052678-exon-scaffold_218-1575043694:518694..519383Clytia hemisphaericaexon
TCONS_00052678-exon-scaffold_218-1575043694:518324..518378TCONS_00052678-exon-scaffold_218-1575043694:518324..518378Clytia hemisphaericaexon
TCONS_00052678-exon-scaffold_218-1510915933:518694..519383TCONS_00052678-exon-scaffold_218-1510915933:518694..519383Clytia hemisphaericaexon
TCONS_00052678-exon-scaffold_218-1510915933:518324..518378TCONS_00052678-exon-scaffold_218-1510915933:518324..518378Clytia hemisphaericaexon
TCONS_00052678-exon-scaffold_218-1491911889:518694..519383TCONS_00052678-exon-scaffold_218-1491911889:518694..519383Clytia hemisphaericaexon
TCONS_00052678-exon-scaffold_218-1491911889:518324..518378TCONS_00052678-exon-scaffold_218-1491911889:518324..518378Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:518324..519383 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.170195	0	0.508036	0.434765	0.938828	0.440821	2.18582	3.56132	1.41928	0.887353	0.0496884	0.101858	3.68657	4.08638	0	0.18729	0	0.137994	0.355325	0.126848	0	0	0.0734655	0.1497
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR011991WHTH_DNA-bd_dom
IPR011990TPR-like_helical_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00052678 vs. Swiss-Prot (Human)
Match: KLC1 (Kinesin light chain 1 OS=Homo sapiens GN=KLC1 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.606e-17
Identity = 64/213 (30.05%), Postives = 100/213 (46.95%), Query Frame = 2 
Query:    2 LITQHNIAQCLQDTGKTKEALEIYRRVEQKQLKILGTDHPRVLITQHNIAQCLQDTGKTKEALEIYRRVEQKQLKILGTDHPRVLITQHNIAQCLQDTGKTKEALEIYRRVEQKQLKILGTDHPSVLITQKNIADSLVDIEKKEEAVVIYKQVASKQLNVLGEQHPDLLITKYNLAVCLHKIGRIEEALDIFREV-----EQVRMTTLDENHP 625
            L T HN+       G+ + A+ + ++  +   K  G DHP V    + +A   +D  K K+A  +       + K LG DHP V  T +N+A      GK KEA  + +R  + + K+LG DHP V     N+A    +  K EE    Y++        LG   P++  TK NLA C  K G+ ++A  +++E+     E+   +  DEN P
Sbjct:  213 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKP 425
The following BLAST results are available for this feature:
BLAST of TCONS_00052678 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KLC11.606e-1730.05Kinesin light chain 1 OS=Homo sapiens GN=KLC1 PE=1... [more]
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