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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052679 ID=TCONS_00052679|Name=TCONS_00052679|organism=Clytia hemisphaerica|type=transcript|length=2232bp
TGTCGGACACAAAATATTGGGCAATCCTTTAACGAACCAATTAACGTGTA
CATGAACAAATTTATTGATTAAGTATTACTTGTTCTTGCCGACGAACATG
TTTAGCCTTTCTCATGAGATTTGTACACAAACAAAAAGCATTGTTTCGTG
GCTAAGCAAGAGTATAAAAAGGTTAATGCTTTTACAGCCAAGCATGCAAT
TGATTCAAAACCAAGTCGCAAACTGATCAAGAATCATGAAGCACCTTTTA
TTGTCAGTTCTGTCCATCGCGTCATTAACAATTTTTGGATGTTCAGCCTT
CCAGGAATCATGGACATCAGTGAGGTATGCATGTATCAAGAAACATAACA
GTCATAAGTTTCAACAAATATCGAGTATCTATCATTGTATGTTGAAATGC
GAAGAAACGAATGGGTGCAAATCTGTGGATTataacaacaataacaacat
aTGCTTACTCTCAAACCAGAATTCCAAAACTGCACCTCATGCCTTTCATC
AACCTTGTTATGATCAGCCCAAGAATTTTCAATATTCCGAAATAATAGTA
TTGAAAAAAGACTGGGGACCAAAAAAGATGGCGTGCATGTCAGGACATCA
AAACATGCGCGTTTTGGAGAACCAATTCAAtttgaaggattgccaagtaa
AATGTGAAGCTGNTTTTGGAGAACCAATTCAATTTGAAGGATTGCCAAGC
AAAATGTGAAGCTGAATCAGAATGCAAATCTGTTGATTACCAAAGAGAAT
CATACGACTGCTATCTCTCAAAGGAGAGTTCAAAAACTGCACCAAAAGAT
TTCCATGAACCCTGTTTTACTGCCCCATCTGATTTTGAATATGCTGAGAT
CATTTCAACTTCCAATCCTGATGAGCCTAAATGTGGAGTCAGCTCGCATA
GTCAGAATCGTATCGTTGGTGGTGAAAATGCGAAGAAAGGGGAATGGCCT
TGGCAGGTCTATTTTGTTTATGTGGATTATACGGACAACAAAAGCTATAC
GTGTGGTGGAACCTTGATTCATAAAAAATGGGTATTGACCGCTGCCCATT
GTACCGACTCAACATATGCCCGCAGTATTGATCTAGTGCTTGGAGAGCAC
ACATTAAGTGAACGAAATGAATTTGGAGAGCAACGAATAAAAGTGAAGCG
AATAATCAACCATGAAAAATATAAGACAGGACCACCTAGTCACGATTTTG
CTCTTCTCGAACTGGAAACAGAAGCAGAAATAACAGACACAGTTCGCACC
ATTTGTCTACCAAAGAAATTTCAACAtgacaaaacaaattttgaaggaCA
TACGTGCCAAATTACTGGATGGGGAATGATCCATATAAATGAGCAAGGAA
GTGATattttaaaaGAAGCAGGAGTTCAAGTTTACAAACAGTCAGATTGC
AAACGATTTTATTACGACTATGAAAAAAAACGTGATAGAATCAATAATAG
TATGTTCTGCGCTGGCGTTCCACAAGGCGGTACCGACTCATGCCAAGGCG
ACAGCGGTGGACCATTACAGTGTCCAGTGCAACAGGGTCATACTAAAAAA
TGGTACCTTTGGGGTGTCACATCTTGGGGCTTTGGGTGCGCGGATGCTCA
ATACCCTGGAGTCTATGGTCGAGTCACTGAAGTTTTGGAATGGATAGAAG
AAAAAACTGGCATTTCTTATTAAGTGtcgttaatatttttttgtagatTT
ATTTCGATATTAAGATATTACACCTCTctttcacagccccggtggaactt
ctgCACTAAATGTGAacgaaaatttctatcaaaatcccaatgtGGATAGA
GTTTTTTTATCAGGTCAAAACAACcgatggggatggttttgaagtaaATT
TTTTCCATTGCATTTGAATGtggatgaaaacaaagtcaaCTTTCAGGTGG
AGCTTTAATTGCAGGGTCTTTTCCCACTGAGggcaaaatttggtcaaatt
ttccagtaggaTTTCTATATAGCACGCTTACCTTTTTCATTACATACACA
AATACTATTATTTTTGGTTTATTTAAAGTTTCTAGGAATATATGGAGATA
AACTGTATTCTCATTGTAGTGTCGGTCCCTTAATGATCGTTTCCCATCTA
CTTTAAGGGAGTTTAAGGCcactacccactcagcattttatggtcctAGG
AGTTCCCAGTGCCGGCGAGGTAGTCAGCATATGCAGCATTTTTAACTCCT
TGTCAAATCTTCTTGAAGGATCTCAAGCAGTG Run BLAST on NCBI protein sequence of TCONS_00052679-protein >TCONS_00052679-protein ID=TCONS_00052679-protein|Name=TCONS_00052679-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MKHLLLSVLSIASLTIFGCSAFQESWTSVRYACIKKHNSHKFQQISSIYH
CMLKCEETNGCKSVDYNNNNNICLLSNQNSKTAPHAFHQPCYDQPKNFQY
SEIIVLKKDWGPKKMACMSGHQNMRVLENQFNLKDCQVKCEAXFGEPIQF
EGLPSKM Run BLAST on NCBI transcript from alignment at scaffold_218:531942..538261- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052679 ID=TCONS_00052679|Name=TCONS_00052679|organism=Clytia hemisphaerica|type=transcript|length=6320bp|location=Sequence derived from alignment at scaffold_218:531942..538261- (Clytia hemisphaerica)
TGTCGGACACAAAATATTGGGCAATCCTTTAACGAACCAATTAACGTGTA
CATGAACAAATTTATTGATTAAGTATTACTTGTTCTTGCCGACGAACATG
TTTAGCCTTTCTCATGAGATTTGTACACAAACAAAAAGCATTGTTTCGTG
GCTAAGCAAGAGTATAAAAAGGTTAATGCTTTTACAGCCAAGCATGCAAT
TGATTCAAAACCAAGTCGCAAACTGATCAAGAATCATGAAGCACCTTTTA
TTGTCAGTTCTGTCCATCGCGTCATTAACAATTTTTGGATGTTCAGGTAT
AATAAGTTATAAGGATTTCAAAGAATAAGATCTTGTCTAATGTCATCATT
AGCACAATATTCAACGATCCTATCTTCTAAACAAAATCTGGTCACTTAAA
GAATTTTTTTAACAGGGTTATTTATTTACAAACATCTTAGCCATTGTACT
TGCTAGCAAATAATTTCCCAAGATTATATTTATAATTTTCATTCTAGCCT
TCCAGGAATCATGGACATCAGTGAGGTATGCATGTATCAAGAAACATAAC
AGTCATAAGTTTCAACAAATATCGAGTATCTATCATTGTATGTTGAAATG
CGAAGAAACGAATGGGTGCAAATCTGTGGATTATAACAACAATAACAACA
TATGCTTACTCTCAAACCAGAATTCCAAAACTGCACCTCATGCCTTTCAT
CAACCTTGTTATGATCAGCCCAAGAATTTTCAATATTCCGAAATAATAGG
TTAGTGTATTGTTTTTTTGTTTTTTTTTGTTATCCTAGCAAAAATGTTTT
CATAGAATTTGTCCTGTCTTGCCATAGTACTGTAGAACAGCTGGTAGGGA
ACCACAGACTTTTATCCAGCATCTCATTTCTCAACAAAAGTAATCTTTAC
TTCTGCTTTAAGTAATGTTAAAAAAGTCTGGCACAATGACATTTTTACGG
GGGTATGAAGTTTGAGAATGTCAGACATGTGACGATCTCCACAAAGTGAC
ACTTAGAAAAGTTGTTCACAGAATAACGAGACTCCTACTAAACCTACAAA
ATATTTCTAGTATTGAAAAAAGACTGGGGACCAAAAAAGATGGCGTGCAT
GTCAGGACATCAAAACATGCGCGTTTTGGAGAACCAATTCAATTTGAAGG
ATTGCCAAGTAAAATGTGAAGCTGNTTTTGGAGAACCAATTCAATTTGAA
GGATTGCCAAGCAAAATGTGAAGCTGAATCAGAATGCAAATCTGTTGATT
ACCAAAGAGAATCATACGACTGCTATCTCTCAAAGGAGAGTTCAAAAACT
GCACCAAAAGATTTCCATGAACCCTGTTTTACTGCCCCATCTGATTTTGA
ATATGCTGAGATCATTTCAACTTCCAATCCTGATGAGCCTAGTAAGCTTT
TGACATTGGTTGTTTTATTTAATCAGTTTTGGGGTCGAACGATCGAAATA
AAAGAGTTTATGCAGCTCGATACTTTGCTTCTGTAATGAGAAAGTTACGC
AAATTAGTCAACCTGAAAACCTTTATAGGTCTTTATTCTTCTTGCTTTCT
TCTTGTTCAAAAAACATTTAAAACTAAAATTTTTGAAAAATATAAATATC
TTAAAATCCGGACGCAATTTATTGTTTTAGAATGTGGAGTCAGCTCGCAT
AGTCAGAATCGTATCGTTGGTGGTGAAAATGCGAAGAAAGGGGAATGGCC
TTGGCAGGTAAGGATTTTGAACTGAACTTTATAGCATGTCCGGAAAAATG
TAATTCAGAATTTATATCAATAAATCGTCGCATCAAAATAAAAAAACTTT
AAGTCAATTTTTGCTGTTTTGAGAAAATCAACTTTAAATTATTTTTCCCT
TAAATCCTGAAAAACCATTAACATTTATATATTTATTTATATTAATATTT
ATCAACAAATATTTCTGTGTTAGAAAAGCCATTAGTCCAAAATTGTTTCC
ATTCTGGACTTCAGGCTTTTTTGCCCTAAACTGGTGTGAATTGAGGCTTT
TTTACCCTGAAAATAAAGTGAAAAGTAAAGTTATTATTTTTCTAAAAGCT
TCTTAAAAATTAGGCCACTTTTGGTCGGTTTTTGTTAAAATACACAAACA
GAATCAAATATTTTCATTTCTTTGCTTTTTTGAATAGGTCTATTTTGTTT
ATGTGGATTATACGGACAACAAAAGCTATACGTGTGGTGGAACCTTGATT
CATAAAAAATGGGTATTGACCGCTGCCCATTGTACCGACTCAACATATGC
CCGCAGTATTGATCTAGTGCTTGGTAAGGAGCAATGATTTTTTTTATTAC
CTCATAATTGTGTGAAGACAATGAACAATGGTTTAACTTACTGAAAATTT
GGTCTTGCCTCAGTAAACAAAATTTTATAATGAGTGCGAAAGCATAGTTT
AGCATAGCATCTCTTCTGGAGTCGGAGGACAACAAAGAATCATTGAAGCA
TGAAGACATAGAAAAGGCAAATATCCTACAAAAGCAATTTTGTGGTGTAT
TTACGAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTACTATAGATCGATCC
CAACATGGAATGCACTACCGCGATTTGTCATCGAGTCGACCTCAATCAAA
TTGTTTAAAGAAAGCCTAAACAAAGCGTGGGAAAAACACCCACTAAGATA
CTTGACATATTAATATTGTAAATAGAAATCGGTTCGTAGAGGTCCACCTC
GGGCCTGTGAGCTTGTATACATCATAATAATAATAATAATAATAGTGCGT
GTTTTCTATCAAAACGATCTCTGATTGGTTGAAAAATTCCACTAAGTAGC
AAGATCACTTTACGACCTGGAATATCCTGCTTGGAAAGTGTGCAAACATG
TTAGTTTTAATTTTGCAATGAAGTAGAATTTTCTTTAAGTAATAAAGTGT
ATCATTCCGTCTTGAGATTCGATAGACTTAATGTTTTGAAATTTACTAAA
ACGTGGCTCAGCATAAACTGTGTAACCCATCTTCGTCCATTCGGGTCATC
TTTAAACAACAAAAACTTTTGTTTCCGATATTAACAAACAATGAAATCAG
AGTGCTTAAAACAAGTCAATCATCAAAATCAATGCCCAGATGATAGGGGG
CGAAATATAGCGAAAATATCAGAACAGTTTCATTAACCCTGAGCTCTTTT
TTTCGACATATTATAGGAGAGCACACATTAAGTGAACGAAATGAATTTGG
AGAGCAACGAATAAAAGTGAAGCGAATAATCAACCATGAAAAATATAAGA
CAGGACCACCTAGTCACGATTTTGCTCTTCTCGAACTGGAAACAGAAGCA
GAAATAACAGACACAGTTCGCACCATTTGTCTACCAAAGAAATTTCAACA
TGACAAAACAAATTTTGAAGGACATACGTGCCAAATTACTGGATGGGGAA
TGATCCATATAAATGAGCAAGGAAGTGATGTATGTGTTTCTTTGTCTACT
GTTTTTTCGAATTTCAGAGCCCGAGATGACAGCTTATCTATCAGTTGACT
TGAGGTGGAGTAGATTGATATTGGGCAAAATATTTTACTTCTAGAGCTAA
ATTATTCTTGTCGTTTTTAGAATCTCAGGATTAGTCAAACCAATATTGAA
TTGCTCTCATCTTTAATTATGAAATTTTTTTTTTTTTCTTTAGATTTTAA
AAGAAGCAGGAGTTCAAGTTTACAAACAGTCAGATTGCAAACGATTTTAT
TACGACTATGAAAAAAAACGTGATAGAATCAATAATAGTATGTTCTGCGC
TGGCGTTCCACAAGGCGGTACCGACTCATGCCAAGGCGACAGCGGTGGAC
CATTACAGTGTCCAGTGCAACAGGGTCATACTAAAAAATGGTACCTTTGG
GGTGTCACATCTTGGGGCTTTGGGTGCGCGGATGCTCAATACCCTGGAGT
CTATGGTCGAGTCACTGAAGTTTTGGAATGGATAGAAGAAAAAACTGGCA
TTTCTTATTAAGTGTCGTTAATATTTTTTTGTAGATTTATTTCGATATTA
AGATATTACACCTCTCTTTCACAGCCCCGGTGGAACTTCTGCACTAAATG
TGAACGAAAATTTCTATCAAAATCCCAATGTGGATAGAGTTTTTTTATCA
GGTCAAAACAACCGATGGGGATGGTTTTGAAGTAAATTTTTTCCATTGCA
TTTGAATGTGGATGAAAACAAAGTCAACTTTCAGGTGGAGCTTTAATTGC
AGGGTCTTTTCCCACTGAGGGCAAAATTTGGTCAAATTTTCCAGTAGGAT
TTCTATATAGCACGCTTACCTTTTTCATTACATACACAAATACTATTATT
TTTGGTTTATTTAAAGTTTCTAGGAATATATGGAGATAAACTGTATTCTC
ATTGTAGTGTCGGTCCCTTAATGATCGTTTCCCATCTACTTTAAGGGAGT
TTAAGGCCACTACCCACTCAGCATTTTATGGTCCTAGGAGTTCCCAGTGC
CGGCGAGGTAGTCAGCATATGCAGCATTTTTAACTCCTTGTCAAATCTTC
TTGAAGGATCTCAAGCAGTG Coding sequence (CDS) from alignment at scaffold_218:531942..538261- >TCONS_00052679 ID=TCONS_00052679|Name=TCONS_00052679|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at scaffold_218:531942..538261- (Clytia hemisphaerica)
TATTGAAAAAAGACTGGGGACCAAAAAAGATGGCGTGCATGTCAGGACAT
CAAAACATGCGCGTTTTGGAGAACCAATTCAATTTGAAGGATTGCCAAGT
AAAATGTGAAGCTGNTTTTGGAGAACCAATTCAATTTGAAGGATTGCCAA
GCAAAATGTGACCTTCCAGGAATCATGGACATCAGTGAGGTATGCATGTA
TCAAGAAACATAACAGTCATAAGTTTCAACAAATATCGAGTATCTATCAT
TGTATGTTGAAATGCGAAGAAACGAATGGGTGCAAATCTGTGGATTATAA
CAACAATAACAACATATGCTTACTCTCAAACCAGAATTCCAAAACTGCAC
CTCATGCCTTTCATCAACCTTGTTATGATCAGCCCAAGAATTTTCAATAT
TCCGAAATAATAGATGAAGCACCTTTTATTGTCAGTTCTGTCCATCGCGT
CATTAACAATTTTTGGATGTTCAGTATTGAAAAAAGACTGGGGACCAAAA
AAGATGGCGTGCATGTCAGGACATCAAAACATGCGCGTTTTGGAGAACCA
ATTCAATTTGAAGGATTGCCAAGTAAAATGTGAAGCTGNTTTTGGAGAAC
CAATTCAATTTGAAGGATTGCCAAGCAAAATGTGACCTTCCAGGAATCAT
GGACATCAGTGAGGTATGCATGTATCAAGAAACATAACAGTCATAAGTTT
CAACAAATATCGAGTATCTATCATTGTATGTTGAAATGCGAAGAAACGAA
TGGGTGCAAATCTGTGGATTATAACAACAATAACAACATATGCTTACTCT
CAAACCAGAATTCCAAAACTGCACCTCATGCCTTTCATCAACCTTGTTAT
GATCAGCCCAAGAATTTTCAATATTCCGAAATAATAGATGAAGCACCTTT
TATTGTCAGTTCTGTCCATCGCGTCATTAACAATTTTTGGATGTTCAGTA
TTGAAAAAAGACTGGGGACCAAAAAAGATGGCGTGCATGTCAGGACATCA
AAACATGCGCGTTTTGGAGAACCAATTCAATTTGAAGGATTGCCAAGTAA
AATGTGAAGCTGNTTTTGGAGAACCAATTCAATTTGAAGGATTGCCAAGC
AAAATGTGACCTTCCAGGAATCATGGACATCAGTGAGGTATGCATGTATC
AAGAAACATAACAGTCATAAGTTTCAACAAATATCGAGTATCTATCATTG
TATGTTGAAATGCGAAGAAACGAATGGGTGCAAATCTGTGGATTATAACA
ACAATAACAACATATGCTTACTCTCAAACCAGAATTCCAAAACTGCACCT
CATGCCTTTCATCAACCTTGTTATGATCAGCCCAAGAATTTTCAATATTC
CGAAATAATAGATGAAGCACCTTTTATTGTCAGTTCTGTCCATCGCGTCA
TTAACAATTTTTGGATGTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052679-exon-scaffold_218-1575043694:537966..538261 | TCONS_00052679-exon-scaffold_218-1575043694:537966..538261 | Clytia hemisphaerica | exon |
| TCONS_00052679-exon-scaffold_218-1575043694:537513..537764 | TCONS_00052679-exon-scaffold_218-1575043694:537513..537764 | Clytia hemisphaerica | exon |
| TCONS_00052679-exon-scaffold_218-1575043694:536871..537201 | TCONS_00052679-exon-scaffold_218-1575043694:536871..537201 | Clytia hemisphaerica | exon |
| TCONS_00052679-exon-scaffold_218-1575043694:536555..536631 | TCONS_00052679-exon-scaffold_218-1575043694:536555..536631 | Clytia hemisphaerica | exon |
| TCONS_00052679-exon-scaffold_218-1575043694:535989..536124 | TCONS_00052679-exon-scaffold_218-1575043694:535989..536124 | Clytia hemisphaerica | exon |
| TCONS_00052679-exon-scaffold_218-1575043694:533033..533295 | TCONS_00052679-exon-scaffold_218-1575043694:533033..533295 | Clytia hemisphaerica | exon |
| TCONS_00052679-exon-scaffold_218-1575043694:531942..532818 | TCONS_00052679-exon-scaffold_218-1575043694:531942..532818 | Clytia hemisphaerica | exon |
| TCONS_00052679-exon-scaffold_218-1510915933:537966..538261 | TCONS_00052679-exon-scaffold_218-1510915933:537966..538261 | Clytia hemisphaerica | exon |
| TCONS_00052679-exon-scaffold_218-1510915933:537513..537764 | TCONS_00052679-exon-scaffold_218-1510915933:537513..537764 | Clytia hemisphaerica | exon |
| TCONS_00052679-exon-scaffold_218-1510915933:536871..537201 | TCONS_00052679-exon-scaffold_218-1510915933:536871..537201 | Clytia hemisphaerica | exon |
| TCONS_00052679-exon-scaffold_218-1510915933:536555..536631 | TCONS_00052679-exon-scaffold_218-1510915933:536555..536631 | Clytia hemisphaerica | exon |
| TCONS_00052679-exon-scaffold_218-1510915933:535989..536124 | TCONS_00052679-exon-scaffold_218-1510915933:535989..536124 | Clytia hemisphaerica | exon |
| TCONS_00052679-exon-scaffold_218-1510915933:533033..533295 | TCONS_00052679-exon-scaffold_218-1510915933:533033..533295 | Clytia hemisphaerica | exon |
| TCONS_00052679-exon-scaffold_218-1510915933:531942..532818 | TCONS_00052679-exon-scaffold_218-1510915933:531942..532818 | Clytia hemisphaerica | exon |
| TCONS_00052679-exon-scaffold_218-1491911889:537966..538261 | TCONS_00052679-exon-scaffold_218-1491911889:537966..538261 | Clytia hemisphaerica | exon |
| TCONS_00052679-exon-scaffold_218-1491911889:537513..537764 | TCONS_00052679-exon-scaffold_218-1491911889:537513..537764 | Clytia hemisphaerica | exon |
| TCONS_00052679-exon-scaffold_218-1491911889:536871..537201 | TCONS_00052679-exon-scaffold_218-1491911889:536871..537201 | Clytia hemisphaerica | exon |
| TCONS_00052679-exon-scaffold_218-1491911889:536555..536631 | TCONS_00052679-exon-scaffold_218-1491911889:536555..536631 | Clytia hemisphaerica | exon |
| TCONS_00052679-exon-scaffold_218-1491911889:535989..536124 | TCONS_00052679-exon-scaffold_218-1491911889:535989..536124 | Clytia hemisphaerica | exon |
| TCONS_00052679-exon-scaffold_218-1491911889:533033..533295 | TCONS_00052679-exon-scaffold_218-1491911889:533033..533295 | Clytia hemisphaerica | exon |
| TCONS_00052679-exon-scaffold_218-1491911889:531942..532818 | TCONS_00052679-exon-scaffold_218-1491911889:531942..532818 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_218 | supercontig | scaffold_218:531942..538261 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR003609 | Pan_app |
Blast
BLAST of TCONS_00052679 vs. Swiss-Prot (Human)
Match: TMPS9 (Transmembrane protease serine 9 OS=Homo sapiens GN=TMPRSS9 PE=1 SV=2) HSP 1 Score: 169.474 bits (428), Expect = 1.709e-43 Identity = 103/266 (38.72%), Postives = 139/266 (52.26%), Query Frame = 3
Query: 855 STSNPDEPKCGVSSHSQNRIVGGENAKKGEWPWQVYFVYVDYTDNKSYTCGGTLIHKKWVLTAAHCTDSTYA--RSIDLVLGEHTLSERNEFGEQRIKVKRIINHEKYKTGPPSHDFXXXXXXXXXXITDTVRTICLPKKFQHDKTNFEGHTCQITGWGMIHINEQGSDILKEAGVQVYKQSDCKRFYYDYEKKRDRINNSMFCAGVPQGGTDSCQGDSGGPLQCPVQQGHTKKWYLWGVTSWGFGCADAQYPGVYGRVTEVLEWI 1646
+T++ P CG++ + RIVGG A +GEWPWQV + + + CG L+ ++W+L+AAHC D Y + LG LS Q +V RI H Y +D ALLEL + VR ICLP+ +G C ITGWG + + L++A V++ + C+RFY +I++ M CAG PQGG DSC GD+GGPL C G +W L GVTSWG+GC +PGVY RV V WI
Sbjct: 808 ATTHTQLPDCGLAPAALTRIVGGSAAGRGEWPWQVSL----WLRRREHRCGAVLVAERWLLSAAHCFD-VYGDPKQWAAFLGTPFLSGAEG---QLERVARIYKHPFYNLYTLDYDVALLELAGPVRRSRLVRPICLPEPAPRPP---DGTRCVITGWGSVREGGSMARQLQKAAVRLLSEQTCRRFY------PVQISSRMLCAGFPQGGVDSCSGDAGGPLACREPSG---RWVLTGVTSWGYGCGRPHFPGVYTRVAAVRGWI 1053 HSP 2 Score: 143.28 bits (360), Expect = 4.339e-35 Identity = 90/265 (33.96%), Postives = 129/265 (48.68%), Query Frame = 3
Query: 867 PDEPKCGV--SSHSQNRIVGGENAKKGEWPWQVYFVYVDYTDNKSYTCGGTLIHKKWVLTAAHCTDSTYARSIDLVLGEHTLSERNEFGEQRIKVKRIINHEKYKTGPPSHDFXXXXXXXXXXITDTVRTICLPKKFQHDKTNFEGHTCQITGWGMIHI-NEQGSDILKEAGVQVYKQSDCKRFYYDYEKKRDRINNSMFCAGVPQGGTDSCQGDSGGPLQCPVQQGHTKKWYLWGVTSWGFGCADAQYPGVYGRVTEVLEWIEE 1652
P +CG + R+VGG A GE PWQV + + CG T++ +W+L+AAHC + T + LG +L +I ++R++ H Y G D A+LEL + ++ +CLP Q G C I+GWG N ++L++A V + Q C Y++ + + M CAG +G DSCQGDSGGPL C G +YL G+ SWG GCA + PGVY R+T + WI E
Sbjct: 487 PKLQECGARPAMEKPTRVVGGFGAASGEVPWQV-----SLKEGSRHFCGATVVGDRWLLSAAHCFNHTKVEQVRAHLGTASLLGLGG-SPVKIGLRRVVLHPLYNPGILDFDLAVLELASPLAFNKYIQPVCLPLAIQKFPV---GRKCMISGWGNTQEGNATKPELLQKASVGIIDQKTCS-VLYNFS-----LTDRMICAGFLEGKVDSCQGDSGGPLACEEAPG---VFYLAGIVSWGIGCAQVKKPGVYTRITRLKGWILE 733 HSP 3 Score: 136.732 bits (343), Expect = 5.451e-33 Identity = 89/266 (33.46%), Postives = 132/266 (49.62%), Query Frame = 3
Query: 879 KCGVSS--HSQNRIVGGENAKKGEWPWQVYFVYVDYTDNKSYTCGGTLIHKKWVLTAAHCTDSTYARSIDLVLGEHTLSERNEFGEQRIKVKRIINHEKYKTGPPSHDFXXXXXXXXXXITDTVRTICLPKK---FQHDKTNFEGHTCQITGWGMIHIN-EQGSDILKEAGVQVYKQSDCKRFYYDYEKKRDRINNSMFCAGVPQGGTDSCQGDSGGPLQCPVQQGHTKKWYLWGVTSWGFGCADAQYPGVYGRVTEVLEWIEEKT 1658
+CG+ RIVGG A GE+PWQ +NK + CG +I+ +W+++AAHC + + + T +E R +V +I+ H Y D A+LEL + ++ +CLP F K C I+GWG + + ++L++A V++ Q+ C Y + + M CAG G DSCQGDSGGPL C G +++L G+ SWG GCA+A+ PGVY RVT + +WI E T
Sbjct: 190 ECGLQPAWRMAGRIVGGMEASPGEFPWQA-----SLRENKEHFCGAAIINARWLVSAAHCFNEFQDPTKWVAYVGATYLSGSEASTVRAQVVQIVKHPLYNADTADFDVAVLELTSPLPFGRHIQPVCLPAATHIFPPSKK------CLISGWGYLKEDFLVKPEVLQKATVELLDQALCASLY------GHSLTDRMVCAGYLDGKVDSCQGDSGGPLVCEEPSG---RFFLAGIVSWGIGCAEARRPGVYARVTRLRDWILEAT 435
The following BLAST results are available for this feature:
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