TCONS_00052698 (transcript) - C. hemisphaerica

Overview
NameTCONS_00052698
Unique NameTCONS_00052698
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length817

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00052698 ID=TCONS_00052698|Name=TCONS_00052698|organism=Clytia hemisphaerica|type=transcript|length=817bp
CAGCGGTCTTCCATTTGGTGAAACATTTAGAGTTGATTTCACTTCAAGAT
GAAAGTGAATTGAAGGAAACTTTTGATTTGACTCATGGCTGTGAGAACGG
TCCAATGCTTAAGATTAAACCTAGGAATtaacattaaatttgaattttta
aaagtagatattgatttttcattctgttttttttgtaatacgACATTTGT
AAATCGTAGCAGGACCCAAAGAGTTAGTGACTAATTTTAAGGTCCTCCCA
TTCGTAAAGTGACAGTTTTAATGTATTTCTCTCAGATTTTGATTATAAGA
ATGCATTGATTCAGCTTGAAGAATCCATACTACCATGGTTATCGTAttcc
ttcgaataaacgccctggGCGTTTATTGAATAATCTTCAACCTAGGTCAC
TTTAATAAGGGAACCTTGCTTAGCCTTTTCGATATCTTTCAGCTCAAATT
ATTCATTTTACTGTTTGAGTACTGAAATAATTCAATTATTAAAGTTTTCT
TCGATATGATTTTCCCTAACGTTTATTTGAGGGTGCGTTTATTGAAAACT
TTTCCTTTAAGGAGGGGCGTTTAATATTCGAGAGACTTTGAAGGGTAATA
ATGTTTTCAAAGTCagaaaaaagcctttaaattttatgatattttattcC
AAAAATGATGCTTAAAAATTTTATACATGCATAATGTAATAAATTGTGAT
AATTATTTAATATATAACAAATACAATATTTGATTGCCCTTGATTGCCCT
TGATTGGAATTTTAATATTACTCTCAGTAAGTAGCTTTCAGAGTGTGCCC
AAGGTGGTtaacaaacc
Run BLAST on NCBI

transcript from alignment at scaffold_218:331651..332467

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00052698 ID=TCONS_00052698|Name=TCONS_00052698|organism=Clytia hemisphaerica|type=transcript|length=817bp|location=Sequence derived from alignment at scaffold_218:331651..332467 (Clytia hemisphaerica)
ggtttgttaACCACCTTGGGCACACTCTGAAAGCTACTTACTGAGAGTAA
TATTAAAATTCCAATCAAGGGCAATCAAGGGCAATCAAATATTGTATTTG
TTATATATTAAATAATTATCACAATTTATTACATTATGCATGTATAAAAT
TTTTAAGCATCATTTTTGgaataaaatatcataaaatttaaaggcttttt
tctGACTTTGAAAACATTATTACCCTTCAAAGTCTCTCGAATATTAAACG
CCCCTCCTTAAAGGAAAAGTTTTCAATAAACGCACCCTCAAATAAACGTT
AGGGAAAATCATATCGAAGAAAACTTTAATAATTGAATTATTTCAGTACT
CAAACAGTAAAATGAATAATTTGAGCTGAAAGATATCGAAAAGGCTAAGC
AAGGTTCCCTTATTAAAGTGACCTAGGTTGAAGATTATTCAATAAACGCc
cagggcgtttattcgaaggaaTACGATAACCATGGTAGTATGGATTCTTC
AAGCTGAATCAATGCATTCTTATAATCAAAATCTGAGAGAAATACATTAA
AACTGTCACTTTACGAATGGGAGGACCTTAAAATTAGTCACTAACTCTTT
GGGTCCTGCTACGATTTACAAATGTcgtattacaaaaaaaacagaatgaa
aaatcaatatctacttttaaaaattcaaatttaatgttaATTCCTAGGTT
TAATCTTAAGCATTGGACCGTTCTCACAGCCATGAGTCAAATCAAAAGTT
TCCTTCAATTCACTTTCATCTTGAAGTGAAATCAACTCTAAATGTTTCAC
CAAATGGAAGACCGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_033302XLOC_033302Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00052698-exon-scaffold_218-1491911889:331651..332467TCONS_00052698-exon-scaffold_218-1491911889:331651..332467Clytia hemisphaericaexon
TCONS_00052698-exon-scaffold_218-1510915933:331651..332467TCONS_00052698-exon-scaffold_218-1510915933:331651..332467Clytia hemisphaericaexon
TCONS_00052698-exon-scaffold_218-1575043694:331651..332467TCONS_00052698-exon-scaffold_218-1575043694:331651..332467Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_218supercontigscaffold_218:331651..332467 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.181185	0.0581831	0	0.199469	0.0957597	0	0.16882	0	0.335474	0.143502	0.844335	0.139005	0.178162	0.239909	0.194501	0.234376	0.193958	0.247747	0.27609	0.31011	0.462244	0.0923786	0.365559	0.41663	0	0.12693	0.172944	0	1.30503	0.565962
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00052698 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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