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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052741 ID=TCONS_00052741|Name=TCONS_00052741|organism=Clytia hemisphaerica|type=transcript|length=2076bp
TGAATAGTGCCTTAAGTCTTAAACAGGATCTATACTTTATGAGTTAGAGG
TTCGAAACTCTAAATAAAGCCGGAAATTATTTCACTAGACGAGAAGAGAA
ACAAGAGCAAGAAGATAAGCTAGCTACTGGGttattataattattataat
cAACACGAAAAGATCGTAGTTCTGTACCCGAGTGATAGTCTACGCATCTA
ACCTGGTTACTGTACAGTTTCATTTTGTTATAAAACTTCGAATCGTTTAC
TCTTCCAAAACTTTAGAAGATTTTCGTATCGAGGATACTAATTGTGTTGG
TTCATCGCTCCAGAAAAACTTAGCATAATCATTTAATATATTCCGTCACC
GTAACCTTCGGAGTTTAAAAGTCTTTTACCACAGTTTCGCAGTATGGTGC
GTCTTTTGGTTTGCGTTTTCCCTTTATTAAAGAAGAGGAGAGCTAGGAAG
GAGATACAAGTCCAACGAATGAACACTTATACCGAAATCCCTGCTGGTGA
GATTGGAGAtggaaaaatcataacaaatgAACGTCGTGATTCAGAGGAAG
ATTACGAAGATCTAAATACGAACCCTGGTATCGCAGTGACAGCTTATAGA
AACAGTGATAAAACACACGACACAAAAAATACTCCGTCAGAATATTATAC
AGAACTTTCAGACAAAAGTGCTCACCAGAGTAGCCAAGATAAAGGCGGAG
CCATTGCCACGGTTGGTGGAACGCATGGTCAGAAATATTACAGTCAGCTT
TCTGATGATATTGATAGTGATACTGAATATGAAGATATGACGAACCATGA
GTACATTGATCTTGGTGAACAATTTCAACCACCATTGGAATCAGCACTGC
AAAACGGTGATTATCGGACTCCTAACAATCCAAAAAGGAATGAAACGAAT
GGATATGGAACATCTGGAAAGGGAGGAAAAACTCTGGAGATAGATGAAGA
AGAGGATGAAACAGGGTATGTGATGCCGAGTCCAACCCGACGTCTGACAT
TCAGGAAACGGtttttgtccatattcaataAGAGCAATAGCcagagaaag
agaagaaaatcaaatttcaaagttgATGGTAGTACTAAAACTGATAGGAG
TGTTGGAGATAAAAATTCGTTTCCAAGAAAACGATCCAAAGCAGTTAAAG
ATGTAAATGTAAAAAAGTTGACAGAGCTGTACGAAAAGAATAAATAGTTC
CCGCTTCATTTACTGGGGATGTTAAGAGCCCGTTAAGAGATGGTTTATAA
TGAGATCAGGAAAATGATGTGTACTGGtttacaaacatttttttttaatt
ttggcgctCACACAACTTCTTATTTGAGATTTTTACCAAATAGGTGCGTG
CTATTGTATTCTCAGAAATCTATAAACAGAGATACGTATTCAGCTCTCAG
TAACTCATATTATATCAGGTCAATTGGTTATGAATCAAGAAGACTGTAAC
CTTTAGGAGCTCGAAGACATGGAAATTCCAATGAACGCGGTTGATAATAC
AGGCCCgacggaagcggggagactggggaaaCCTCAGCCTCCCCACTTAT
GAACAAATGAGATTTTCTCTAATTCCTAGCGAATTCCATCTCATTTGAGC
CTTCAGCTTCCcacacttttacggttgttccgccgggcctgtaaTATATG
GAATTTTTATAAAACCGCTCTCTGAACGAAAGCTTTGCATAGTCATCGAT
GACATGGACACAAACAACCTTACATACAAAAGAACAAAACCTTTTTAGAA
TATACCAAAGTTTCTAGAAAGTAACAGATAACAACTAAGCAGAAGATTTG
GAGATATGATTCATAAAATGACCTTATTGACTTGTCAAAGGTTTAATGGT
TCAATCATAGTAGAATAGAATTGATATTTATCATTTTGTAATTTGAGACA
GCAGAAATTGTAAATATTAGAAGGCTGTAAATGAATTACATATTATGATC
TATGATATATTTGTAGTTTCACTATTTTATGAAAGATATTATTATACCAC
TGTGAAAATATGCCATTCTCAGCGCTAAAAATTACATGGAAAAGAACCCA
GTTTTCAGTGGTGGTTCTGAAAGGGG Run BLAST on NCBI protein sequence of TCONS_00052741-protein >TCONS_00052741-protein ID=TCONS_00052741-protein|Name=TCONS_00052741-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
MVRLLVCVFPLLKKRRARKEIQVQRMNTYTEIPAGEIGDGKIITNERRDS
EEDYEDLNTNPGIAVTAYRNSDKTHDTKNTPSEYYTELSDKSAHQSSQDK
GGAIATVGGTHGQKYYSQLSDDIDSDTEYEDMTNHEYIDLGEQFQPPLES
ALQNGDYRTPNNPKRNETNGYGTSGKGGKTLEIDEEEDETGYVMPSPTRR
LTFRKRFLSIFNKSNSQRKRRKSNFKVDGSTKTDRSVGDKNSFPRKRSKA
VKDVNVKKLTELYEKNK Run BLAST on NCBI transcript from alignment at scaffold_219:91807..93882 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052741 ID=TCONS_00052741|Name=TCONS_00052741|organism=Clytia hemisphaerica|type=transcript|length=2076bp|location=Sequence derived from alignment at scaffold_219:91807..93882 (Clytia hemisphaerica)
CCCCTTTCAGAACCACCACTGAAAACTGGGTTCTTTTCCATGTAATTTTT
AGCGCTGAGAATGGCATATTTTCACAGTGGTATAATAATATCTTTCATAA
AATAGTGAAACTACAAATATATCATAGATCATAATATGTAATTCATTTAC
AGCCTTCTAATATTTACAATTTCTGCTGTCTCAAATTACAAAATGATAAA
TATCAATTCTATTCTACTATGATTGAACCATTAAACCTTTGACAAGTCAA
TAAGGTCATTTTATGAATCATATCTCCAAATCTTCTGCTTAGTTGTTATC
TGTTACTTTCTAGAAACTTTGGTATATTCTAAAAAGGTTTTGTTCTTTTG
TATGTAAGGTTGTTTGTGTCCATGTCATCGATGACTATGCAAAGCTTTCG
TTCAGAGAGCGGTTTTATAAAAATTCCATATAttacaggcccggcggaac
aaccgtaaaagtgtgGGAAGCTGAAGGCTCAAATGAGATGGAATTCGCTA
GGAATTAGAGAAAATCTCATTTGTTCATAAGTGGGGAGGCTGAGGtttcc
ccagtctccccgcttccgtcGGGCCTGTATTATCAACCGCGTTCATTGGA
ATTTCCATGTCTTCGAGCTCCTAAAGGTTACAGTCTTCTTGATTCATAAC
CAATTGACCTGATATAATATGAGTTACTGAGAGCTGAATACGTATCTCTG
TTTATAGATTTCTGAGAATACAATAGCACGCACCTATTTGGTAAAAATCT
CAAATAAGAAGTTGTGTGagcgccaaaattaaaaaaaaatgtttgtaaaC
CAGTACACATCATTTTCCTGATCTCATTATAAACCATCTCTTAACGGGCT
CTTAACATCCCCAGTAAATGAAGCGGGAACTATTTATTCTTTTCGTACAG
CTCTGTCAACTTTTTTACATTTACATCTTTAACTGCTTTGGATCGTTTTC
TTGGAAACGAATTTTTATCTCCAACACTCCTATCAGTTTTAGTACTACCA
TcaactttgaaatttgattttcttctctttctctgGCTATTGCTCTtatt
gaatatggacaaaaaCCGTTTCCTGAATGTCAGACGTCGGGTTGGACTCG
GCATCACATACCCTGTTTCATCCTCTTCTTCATCTATCTCCAGAGTTTTT
CCTCCCTTTCCAGATGTTCCATATCCATTCGTTTCATTCCTTTTTGGATT
GTTAGGAGTCCGATAATCACCGTTTTGCAGTGCTGATTCCAATGGTGGTT
GAAATTGTTCACCAAGATCAATGTACTCATGGTTCGTCATATCTTCATAT
TCAGTATCACTATCAATATCATCAGAAAGCTGACTGTAATATTTCTGACC
ATGCGTTCCACCAACCGTGGCAATGGCTCCGCCTTTATCTTGGCTACTCT
GGTGAGCACTTTTGTCTGAAAGTTCTGTATAATATTCTGACGGAGTATTT
TTTGTGTCGTGTGTTTTATCACTGTTTCTATAAGCTGTCACTGCGATACC
AGGGTTCGTATTTAGATCTTCGTAATCTTCCTCTGAATCACGACGTTcat
ttgttatgatttttccaTCTCCAATCTCACCAGCAGGGATTTCGGTATAA
GTGTTCATTCGTTGGACTTGTATCTCCTTCCTAGCTCTCCTCTTCTTTAA
TAAAGGGAAAACGCAAACCAAAAGACGCACCATACTGCGAAACTGTGGTA
AAAGACTTTTAAACTCCGAAGGTTACGGTGACGGAATATATTAAATGATT
ATGCTAAGTTTTTCTGGAGCGATGAACCAACACAATTAGTATCCTCGATA
CGAAAATCTTCTAAAGTTTTGGAAGAGTAAACGATTCGAAGTTTTATAAC
AAAATGAAACTGTACAGTAACCAGGTTAGATGCGTAGACTATCACTCGGG
TACAGAACTACGATCTTTTCGTGTTgattataataattataataaCCCAG
TAGCTAGCTTATCTTCTTGCTCTTGTTTCTCTTCTCGTCTAGTGAAATAA
TTTCCGGCTTTATTTAGAGTTTCGAACCTCTAACTCATAAAGTATAGATC
CTGTTTAAGACTTAAGGCACTATTCA Coding sequence (CDS) from alignment at scaffold_219:91807..93882 >TCONS_00052741 ID=TCONS_00052741|Name=TCONS_00052741|organism=Clytia hemisphaerica|type=CDS|length=804bp|location=Sequence derived from alignment at scaffold_219:91807..93882 (Clytia hemisphaerica)
CTATTTATTCTTTTCGTACAGCTCTGTCAACTTTTTTACATTTACATCTT
TAACTGCTTTGGATCGTTTTCTTGGAAACGAATTTTTATCTCCAACACTC
CTATCAGTTTTAGTACTACCATcaactttgaaatttgattttcttctctt
tctctgGCTATTGCTCTtattgaatatggacaaaaaCCGTTTCCTGAATG
TCAGACGTCGGGTTGGACTCGGCATCACATACCCTGTTTCATCCTCTTCT
TCATCTATCTCCAGAGTTTTTCCTCCCTTTCCAGATGTTCCATATCCATT
CGTTTCATTCCTTTTTGGATTGTTAGGAGTCCGATAATCACCGTTTTGCA
GTGCTGATTCCAATGGTGGTTGAAATTGTTCACCAAGATCAATGTACTCA
TGGTTCGTCATATCTTCATATTCAGTATCACTATCAATATCATCAGAAAG
CTGACTGTAATATTTCTGACCATGCGTTCCACCAACCGTGGCAATGGCTC
CGCCTTTATCTTGGCTACTCTGGTGAGCACTTTTGTCTGAAAGTTCTGTA
TAATATTCTGACGGAGTATTTTTTGTGTCGTGTGTTTTATCACTGTTTCT
ATAAGCTGTCACTGCGATACCAGGGTTCGTATTTAGATCTTCGTAATCTT
CCTCTGAATCACGACGTTcatttgttatgatttttccaTCTCCAATCTCA
CCAGCAGGGATTTCGGTATAAGTGTTCATTCGTTGGACTTGTATCTCCTT
CCTAGCTCTCCTCTTCTTTAATAAAGGGAAAACGCAAACCAAAAGACGCA
CCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052741-exon-scaffold_219-1491911889:91807..93882 | TCONS_00052741-exon-scaffold_219-1491911889:91807..93882 | Clytia hemisphaerica | exon |
| TCONS_00052741-exon-scaffold_219-1510915933:91807..93882 | TCONS_00052741-exon-scaffold_219-1510915933:91807..93882 | Clytia hemisphaerica | exon |
| TCONS_00052741-exon-scaffold_219-1575043694:91807..93882 | TCONS_00052741-exon-scaffold_219-1575043694:91807..93882 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_219 | supercontig | scaffold_219:91807..93882 . |
Blast
The following BLAST results are available for this feature:
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