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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00052785 ID=TCONS_00052785|Name=TCONS_00052785|organism=Clytia hemisphaerica|type=transcript|length=1741bp
ATGCTATCAATTCTAGCCATTGGTAACTTCGTAAAACGTGTTATTAGTAG
TGCCTCCTTTACAGAAACTCCAAGCAGGATCTTTTTACTAGCCAATTATG
GTGCCAAAAGTGATTTCCTGATAACTTCAAAAGTCTTGCCTTCTTCCCAA
GATTTGACCAGCTATCTGTACATCTGATGCTCTACTTGTGATAAGGACTC
GATAAAAACATACACACCCTAGGCACAATATAGTAACTAACAAAAAGAAC
AtataatagaaaataaaatactatTTTATAaactatttagatattatacc
TAAATATATCGCAGACGATATGAAATACTTAATATGCATTTTAACTTGCC
TCTGGTTTGCAACATGAGGCGTCCATACAGCCTTGTTGACAGGCTATGTA
AAGCATCTAATCAATGCCGACTGTTTATTATGCCCGATCACGATCCTTCT
TTATGCTTCTACCTATCTAAAACTGGATCATTCTCAACTTGCCGCTCACT
GCAACTAGGATACATATCCTTCTCCAAATTAACCTTTGTCAGTCGACTGA
TAGAGAACTTCCGTATATAGTTGTGTAATACAATATCTAAATTAATATAA
ATAAATGCCGTAGAAACCGACTCTAATTTGACGTGCACTGTCTGTGTACA
ACCTTGCCTAGGTTGACACCAGCCTTCAAGCCAAGAAGATCACTCtgctg
tttttcaatttttcaatcaacCGGGTCGCAGATTTTTGGTAacgtaaaat
aaaataaaatattccgGTTTTGTGTTTGATTATTACATCGAGTTGAGGAT
Aagtttatgcttataaaaagttgaaaattttgtttgtaaactatctgaag
taaaaaagtaaaagaatttgTTCTCTTCTTTATCGTGTTTTATAAGCGTA
AGCGCTGTCCAAGAAAAGAATTCACAATTCACTGCAAATATTAAATCTTA
TAAAAGAGAGCAGCTGTGCCTTAGAAGAGTAACCTAGATTAAGTGANNNN
NNNNNNNNNNNNNNNNNNNNNNTATCGTGTTTTATAAGCGTAAGCGCTGT
CCAAGAAAAGAATTCACAATTCACTGCAAATATTAAATCTTATAAAAGAG
AGCAGCTGTGCCTTAGAAGAGTAACAGTAACCTAGATTAAGTGAATGGGC
CTTTTGTTTAAGctaagaaattttaaaagcaaaagagagaattttgaaat
aattgatGTTACGTTTCGTAGagaaaaatttgtgtttttatggtgttttt
actttttgttttgatttcatcttCAACGGccaaaatgataataaaaattt
tcctgtttttgcGAGCCCCTTGCGCAACACCGAAAACCTAATTCCAAAAG
AAAATATGTTAAACCAAATTCAATCCAATACgcaaacaatcaaaatcttg
TAGAGTTCATAACAATCATATTGCAAGTTTTTTGTCCTTCTTCTTCCACT
TCGCTGCAAGCAACCGAGCCTTATGATAGCCAAAGACACTACAATAAGCT
ATTACAGCCTCAATGACCCCAAATGTCCAGCGACAATCCCTAAACGACCA
GCGgcaatcaccttggccaaccTCCCCAAAACCAGCAacaatcaccttgg
ccaaccTCCCCAAAACCAGCgacaatcaccttggccaaccTCCCAAAACC
AGCgacaatcaccttggccaacatcccCAAAACCACCgacaatcaccttg
gccaacatctccAAAAAACCAGCCACAATCACCCAAGCCAN Run BLAST on NCBI transcript from alignment at scaffold_22:25745..27485 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00052785 ID=TCONS_00052785|Name=TCONS_00052785|organism=Clytia hemisphaerica|type=transcript|length=1741bp|location=Sequence derived from alignment at scaffold_22:25745..27485 (Clytia hemisphaerica)
NTGGCTTGGGTGATTGTGGCTGGTTTTTTggagatgttggccaaggtgat
tgtcGGTGGTTTTGgggatgttggccaaggtgattgtcGCTGGTTTTGGG
AggttggccaaggtgattgtcGCTGGTTTTGGGGAggttggccaaggtga
ttgtTGCTGGTTTTGGGGAggttggccaaggtgattgcCGCTGGTCGTTT
AGGGATTGTCGCTGGACATTTGGGGTCATTGAGGCTGTAATAGCTTATTG
TAGTGTCTTTGGCTATCATAAGGCTCGGTTGCTTGCAGCGAAGTGGAAGA
AGAAGGACAAAAAACTTGCAATATGATTGTTATGAACTCTAcaagatttt
gattgtttgcGTATTGGATTGAATTTGGTTTAACATATTTTCTTTTGGAA
TTAGGTTTTCGGTGTTGCGCAAGGGGCTCgcaaaaacaggaaaattttta
ttatcattttggCCGTTGaagatgaaatcaaaacaaaaagtaaaaacacc
ataaaaacacaaatttttctCTACGAAACGTAACatcaattatttcaaaa
ttctctcttttgcttttaaaatttcttagCTTAAACAAAAGGCCCATTCA
CTTAATCTAGGTTACTGTTACTCTTCTAAGGCACAGCTGCTCTCTTTTAT
AAGATTTAATATTTGCAGTGAATTGTGAATTCTTTTCTTGGACAGCGCTT
ACGCTTATAAAACACGATANNNNNNNNNNNNNNNNNNNNNNNNNNTCACT
TAATCTAGGTTACTCTTCTAAGGCACAGCTGCTCTCTTTTATAAGATTTA
ATATTTGCAGTGAATTGTGAATTCTTTTCTTGGACAGCGCTTACGCTTAT
AAAACACGATAAAGAAGAGAAcaaattcttttacttttttacttcagata
gtttacaaacaaaattttcaactttttataagcataaactTATCCTCAAC
TCGATGTAATAATCAAACACAAAACcggaatattttattttattttacgt
TACCAAAAATCTGCGACCCGgttgattgaaaaattgaaaaacagcaGAGT
GATCTTCTTGGCTTGAAGGCTGGTGTCAACCTAGGCAAGGTTGTACACAG
ACAGTGCACGTCAAATTAGAGTCGGTTTCTACGGCATTTATTTATATTAA
TTTAGATATTGTATTACACAACTATATACGGAAGTTCTCTATCAGTCGAC
TGACAAAGGTTAATTTGGAGAAGGATATGTATCCTAGTTGCAGTGAGCGG
CAAGTTGAGAATGATCCAGTTTTAGATAGGTAGAAGCATAAAGAAGGATC
GTGATCGGGCATAATAAACAGTCGGCATTGATTAGATGCTTTACATAGCC
TGTCAACAAGGCTGTATGGACGCCTCATGTTGCAAACCAGAGGCAAGTTA
AAATGCATATTAAGTATTTCATATCGTCTGCGATATATTTAggtataata
tctaaatagttTATAAAatagtattttattttctattataTGTTCTTTTT
GTTAGTTACTATATTGTGCCTAGGGTGTGTATGTTTTTATCGAGTCCTTA
TCACAAGTAGAGCATCAGATGTACAGATAGCTGGTCAAATCTTGGGAAGA
AGGCAAGACTTTTGAAGTTATCAGGAAATCACTTTTGGCACCATAATTGG
CTAGTAAAAAGATCCTGCTTGGAGTTTCTGTAAAGGAGGCACTACTAATA
ACACGTTTTACGAAGTTACCAATGGCTAGAATTGATAGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00052785-exon-scaffold_22-1491911889:25745..27485 | TCONS_00052785-exon-scaffold_22-1491911889:25745..27485 | Clytia hemisphaerica | exon |
| TCONS_00052785-exon-scaffold_22-1510915933:25745..27485 | TCONS_00052785-exon-scaffold_22-1510915933:25745..27485 | Clytia hemisphaerica | exon |
| TCONS_00052785-exon-scaffold_22-1575043694:25745..27485 | TCONS_00052785-exon-scaffold_22-1575043694:25745..27485 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_22 | supercontig | scaffold_22:25745..27485 . |
Blast
The following BLAST results are available for this feature:
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